ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl41h05 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 65.5 bits (158), Expect = 3e-11 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Frame = +3 Query: 159 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 335 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 336 VRYVLPSEDHTIQK 377 +R+VLP +DHTI+K Sbjct: 63 IRFVLPLQDHTIKK 76
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 65.5 bits (158), Expect = 3e-11 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Frame = +3 Query: 159 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 335 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 336 VRYVLPSEDHTIQK 377 +R+VLP +DHTI+K Sbjct: 63 IRFVLPLQDHTIKK 76
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 65.5 bits (158), Expect = 3e-11 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Frame = +3 Query: 159 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 335 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 336 VRYVLPSEDHTIQK 377 +R+VLP +DHTI+K Sbjct: 63 IRFVLPLQDHTIKK 76
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/69 (40%), Positives = 43/69 (62%) Frame = +3 Query: 171 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 350 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 351 PSEDHTIQK 377 P ++HTI+K Sbjct: 66 PVQNHTIKK 74
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/68 (32%), Positives = 41/68 (60%) Frame = +3 Query: 174 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 353 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 354 SEDHTIQK 377 S + ++K Sbjct: 63 SRNKELKK 70
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/50 (34%), Positives = 33/50 (66%) Frame = +3 Query: 228 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQK 377 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++K Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKK 78
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 0.64 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +3 Query: 132 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 311 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 312 LPTLFITVVRYVLPSED 362 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = -2 Query: 161 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGGG 51 G GSA R A G + GS AE GA RGGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGGG 159
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 227 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 54 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>CLA4_YEAST (P48562) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)| Length = 842 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +3 Query: 18 LASRLFAPVNHSPPSSGSQISIHLRRRSNHRYPTRRRPPARVHGR 152 L S P+N P+S S I HL+ N +YP R + +G+ Sbjct: 312 LGSGSLPPINTKLPTSQSNIPRHLQNVPNQQYPKMRNGHSPTNGQ 356
>ISPG_WOLSU (Q7M8Z2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 359 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 119 CGVSVVGSAAEVDRDLGAGRGGGVVDRSEEARCQL 15 C V+ +G A D + GRG G++ + E C+L Sbjct: 298 CAVNALGEAKHADIAIAFGRGDGLIIKKGEILCKL 332
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +3 Query: 39 PVNHSPPSSGSQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKG 203 P N + P S S H RR + P ++RP R H R ++ C + D G Sbjct: 113 PENATAPRSPSHSPEH-RRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSG 166
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 234 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 365 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 234 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 365 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSNPDSP 322
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 262 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 125 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 93 RRSNHRYPTRRRPPARVHGRSGA 161 RR ++R P RRRP R H RS A Sbjct: 409 RRDSYRDPYRRRPGDRSHSRSPA 431
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +3 Query: 54 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHGRSGAMD 167 PPS G +SIH R R +HR P R R HG + D Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----VRFHGGAALGD 597
>HCY2E_RAPTH (P83040) Hemocyanin type 2 unit e (RtH2-e)| Length = 413 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%) Frame = -3 Query: 355 EGRT*RTTVMKSVGRVSPLRRSMTARFMASTLAATSLPSRSALISFAMAAEPL------- 197 +G T R V KSV +SP R + S +S +L SF A PL Sbjct: 3 QGHTHRNLVRKSVRNLSPAERRSLVHALKSLQEDSSADGFQSLASF-HAQPPLCPYPEAN 61 Query: 196 SKWTSSVHGLSMAPD 152 ++ VHG++ P+ Sbjct: 62 KRFACCVHGMATFPE 76
>PANK4_HUMAN (Q9NVE7) Pantothenate kinase 4 (EC 2.7.1.33) (Pantothenic acid| kinase 4) (hPanK4) Length = 773 Score = 27.3 bits (59), Expect = 9.2 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 13/76 (17%) Frame = +3 Query: 171 PCTLLVHFDKGSAAMANEIKADL---EGS--------DVAAKVEAMKRAVM--LLLNGET 311 PC L DKG AA+ E ADL EG A + E++K AV+ L Sbjct: 698 PCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERL 757 Query: 312 LPTLFITVVRYVLPSE 359 LF + +Y +P+E Sbjct: 758 GGRLFSVIFKYEVPAE 773
>WHRN_RAT (Q810W9) Whirlin (CASK-interacting protein CIP98)| Length = 920 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Frame = +3 Query: 21 ASRLFAPVNHSPPSSGSQISIHLRRRSNHRY---------PTRRRPPARVHGRSGAMDKP 173 +S ++A ++H+ PSS + HL + H P + PPA G + P Sbjct: 660 SSPIYASISHANPSSRKPLDTHLALVNQHPIGPFPRVQSPPHLKSPPAEAPGAGACLPPP 719
>YPNA_THIRO (Q83WU4) UPF0085 protein in pntA-hypC2 intergenic region (Orf2)| Length = 271 Score = 27.3 bits (59), Expect = 9.2 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +3 Query: 129 PPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLL--- 299 PP+R GRS A+ KP + + AMAN D + + RA ++L+ Sbjct: 104 PPSRKSGRSHAITKPSYYTKRIEAINFAMAN---------DDGIRPDNFHRADVVLIGVS 154 Query: 300 -NGETLPTLFITVVRYVLPSEDHTI 371 +G+T PT + Y L S ++ + Sbjct: 155 RSGKT-PTCLYLAMHYGLRSANYPV 178
>MYCLB_XENLA (P35805) L-myc B protein (L-myc 2 protein)| Length = 344 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 51 SPPSSGSQISIHLRRRSNHRYPTRRR 128 SP +SGS S L +R NH Y R+R Sbjct: 248 SPLASGSSDSEDLAKRKNHNYLERKR 273
>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (Protein| glide-2) Length = 613 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 277 FMASTLAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLP 146 + A+ AAT+ PS+S + +A + L+ + S G S A +P Sbjct: 359 YHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVP 402
>DRD2_PANTR (P60026) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSTPDSP 322
>DRD2_HUMAN (P14416) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSTPDSP 322
>DRD2_CERAE (P52702) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSTPDSP 322
>DRD2_BOVIN (P20288) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 337 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 173 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 172 GLSMAPDLP 146 GL PD P Sbjct: 314 GLHSTPDSP 322
>WHRN_MOUSE (Q80VW5) Whirlin| Length = 906 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Frame = +3 Query: 21 ASRLFAPVNHSPPSSGSQISIHLRRRSNHRY---------PTRRRPPARVHGRSGAMDKP 173 +S ++A ++H+ PSS + HL + H P + PPA G + P Sbjct: 647 SSPIYASISHANPSSRKPLDTHLALVNQHPIGPFPRVQSPPHLKSPPAETPGAGACLPPP 706
>ZN576_HUMAN (Q9H609) Zinc finger protein 576| Length = 170 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Frame = -3 Query: 301 LRRSMTARFMASTL---------AATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDL 149 ++R A F+A L A S PS ALI+ + P +K T V + P Sbjct: 53 MKREHPADFVAQKLQGVLFICFTCARSFPSSKALITHQRSHGPAAKPTLPVATTTAQPTF 112 Query: 148 PCTRAG 131 PC G Sbjct: 113 PCPDCG 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,582,640 Number of Sequences: 219361 Number of extensions: 649175 Number of successful extensions: 2794 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2450 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2794 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
