Clone Name | bastl41h03 |
---|---|
Clone Library Name | barley_pub |
>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1) (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog protein 1) (Su(var)3-9 homolog protein 1) (Protein SET DOMAIN GR Length = 670 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +2 Query: 320 DYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGG 460 D VLD KPLRTL P+FP + + VC PFGP+ G Sbjct: 10 DKTRVLDIKPLRTLRPVFP--------SGNQAPPFVCAPPFGPFPPG 48
>PLB1_CANAL (Q9UWF6) Lysophospholipase 1 precursor (EC 3.1.1.5) (Phospholipase| B 1) (CaPLB1) Length = 605 Score = 31.2 bits (69), Expect = 1.3 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 195 AILRRKLGWEGEERTEPCRRCYPGRCF 115 AI+RR+ +G E+TE C+RC+ C+ Sbjct: 534 AIIRREQERQGIEQTEQCKRCFENYCW 560
>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)| Length = 1004 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 225 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 115 +CL+V +CP+A LR G G ER C+ C GR F Sbjct: 633 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 666
>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3) (Protein SET DOMAIN GR Length = 669 Score = 30.8 bits (68), Expect = 1.8 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = +2 Query: 320 DYAAVLDAKPLRTLTPMFPAP------LGMHTFTPKSSSSVVCVTPFG 445 D + VLD KPLR+L P+FP +G F P SSS PFG Sbjct: 17 DKSIVLDIKPLRSLKPVFPNGNQGPPFVGCPPFGP-SSSEYSSFFPFG 63
>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)| Length = 1007 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 225 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 115 +CL+V +CP+A LR G G ER C+ C GR F Sbjct: 635 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 668
>MSH5_MOUSE (Q9QUM7) MutS protein homolog 5| Length = 833 Score = 29.3 bits (64), Expect = 5.1 Identities = 10/34 (29%), Positives = 20/34 (58%) Frame = -3 Query: 459 PPAYGPNGVTQTTEDELLGVKVCIPSGAGNMGVS 358 PP GP G+ + E+E + +C+ +G +G++ Sbjct: 30 PPMAGPGGIEEEDEEEPAEIHLCVLWSSGYLGIA 63
>NPRV_VIBPR (Q00971) Neutral protease precursor (EC 3.4.24.25) (Vibriolysin)| (Aeromonolysin) Length = 609 Score = 29.3 bits (64), Expect = 5.1 Identities = 22/77 (28%), Positives = 31/77 (40%) Frame = +2 Query: 197 CGQV*TCRQRDKEIADISPYLRKISCQLTMAGNQQPASVVLDYAAVLDAKPLRTLTPMFP 376 CG V +AD+ + + P+ VL+ KPL L+ Sbjct: 473 CGVVKAASDMGYSVADVEDAFNTVGVNASCGATPPPSGDVLEIG-----KPLANLSGN-R 526 Query: 377 APLGMHTFTPKSSSSVV 427 + +TFTP SSSSVV Sbjct: 527 NDMTYYTFTPSSSSSVV 543
>TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) Length = 744 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -3 Query: 228 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 73 S+CL Y CP+ + PC + RC + +PP S ++ P Sbjct: 23 SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60
>TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger protein 22) (RING| finger protein HAC1) Length = 744 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -3 Query: 228 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 73 S+CL Y CP+ + PC + RC + +PP S ++ P Sbjct: 23 SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,516,955 Number of Sequences: 219361 Number of extensions: 1085541 Number of successful extensions: 2807 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2804 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)