ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysi... 39 0.008
2PLB1_CANAL (Q9UWF6) Lysophospholipase 1 precursor (EC 3.1.1.5) (... 31 1.3
3SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (... 31 1.8
4SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysi... 31 1.8
5SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SAL... 31 1.8
6MSH5_MOUSE (Q9QUM7) MutS protein homolog 5 29 5.1
7NPRV_VIBPR (Q00971) Neutral protease precursor (EC 3.4.24.25) (V... 29 5.1
8TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger prote... 28 8.7
9TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger pro... 28 8.7

>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1)
           (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog
           protein 1) (Su(var)3-9 homolog protein 1) (Protein SET
           DOMAIN GR
          Length = 670

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +2

Query: 320 DYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGG 460
           D   VLD KPLRTL P+FP        +   +   VC  PFGP+  G
Sbjct: 10  DKTRVLDIKPLRTLRPVFP--------SGNQAPPFVCAPPFGPFPPG 48



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>PLB1_CANAL (Q9UWF6) Lysophospholipase 1 precursor (EC 3.1.1.5) (Phospholipase|
           B 1) (CaPLB1)
          Length = 605

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 195 AILRRKLGWEGEERTEPCRRCYPGRCF 115
           AI+RR+   +G E+TE C+RC+   C+
Sbjct: 534 AIIRREQERQGIEQTEQCKRCFENYCW 560



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>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 225 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 115
           +CL+V +CP+A LR   G  G ER   C+ C  GR F
Sbjct: 633 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 666



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>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog
           protein 3) (Su(var)3-9 homolog protein 3) (Protein SET
           DOMAIN GR
          Length = 669

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 320 DYAAVLDAKPLRTLTPMFPAP------LGMHTFTPKSSSSVVCVTPFG 445
           D + VLD KPLR+L P+FP        +G   F P SSS      PFG
Sbjct: 17  DKSIVLDIKPLRSLKPVFPNGNQGPPFVGCPPFGP-SSSEYSSFFPFG 63



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>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)|
          Length = 1007

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 225 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 115
           +CL+V +CP+A LR   G  G ER   C+ C  GR F
Sbjct: 635 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 668



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>MSH5_MOUSE (Q9QUM7) MutS protein homolog 5|
          Length = 833

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 459 PPAYGPNGVTQTTEDELLGVKVCIPSGAGNMGVS 358
           PP  GP G+ +  E+E   + +C+   +G +G++
Sbjct: 30  PPMAGPGGIEEEDEEEPAEIHLCVLWSSGYLGIA 63



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>NPRV_VIBPR (Q00971) Neutral protease precursor (EC 3.4.24.25) (Vibriolysin)|
           (Aeromonolysin)
          Length = 609

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = +2

Query: 197 CGQV*TCRQRDKEIADISPYLRKISCQLTMAGNQQPASVVLDYAAVLDAKPLRTLTPMFP 376
           CG V         +AD+      +    +      P+  VL+       KPL  L+    
Sbjct: 473 CGVVKAASDMGYSVADVEDAFNTVGVNASCGATPPPSGDVLEIG-----KPLANLSGN-R 526

Query: 377 APLGMHTFTPKSSSSVV 427
             +  +TFTP SSSSVV
Sbjct: 527 NDMTYYTFTPSSSSSVV 543



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>TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger protein 22)|
           (Brain-expressed RING finger protein)
          Length = 744

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 228 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 73
           S+CL  Y CP+ +              PC   +  RC +  +PP S  ++ P
Sbjct: 23  SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60



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>TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger protein 22) (RING|
           finger protein HAC1)
          Length = 744

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 228 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 73
           S+CL  Y CP+ +              PC   +  RC +  +PP S  ++ P
Sbjct: 23  SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,516,955
Number of Sequences: 219361
Number of extensions: 1085541
Number of successful extensions: 2807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2804
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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