Clone Name | bastl41h03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 34808 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 34749 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 34748 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 34689 Query: 397 tttcaccccta---aaagctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||| ||| ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 34688 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 34629 Query: 454 tgg 456 ||| Sbjct: 34628 tgg 34626
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 146326 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 146267 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 146266 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 146207 Query: 397 tttcaccccta---aaagctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||| ||| ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 146206 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 146147 Query: 454 tgg 456 ||| Sbjct: 146146 tgg 146144
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 22306490 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 22306549 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 22306550 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 22306609 Query: 397 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||||| | ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 22306610 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 22306669 Query: 454 tgg 456 ||| Sbjct: 22306670 tgg 22306672 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 8113952 gtggcggcgcggcggcgcga 8113933
>gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds Length = 2982 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 69 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 128 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 129 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 188 Query: 397 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||||| | ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 189 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 248 Query: 454 tgg 456 ||| Sbjct: 249 tgg 251
>dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A08, full insert sequence Length = 3270 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 386 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 445 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 446 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 505 Query: 397 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||||| | ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 506 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 565 Query: 454 tgg 456 ||| Sbjct: 566 tgg 568
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 150/183 (81%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 277 gcttacaatggctggaaatcagcagccggcttcagttgtgttggattatgcagcagtcct 336 |||||| |||||||||| || |||| | |||||||| | ||||| |||||||||| | Sbjct: 22616401 gcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgt 22616460 Query: 337 cgacgccaaacccttgcgcacactgacccccatgttccctgcaccgctagggatgcacac 396 || || ||||||||||||||| |||| |||||||||||||| | || || ||||||| Sbjct: 22616461 tgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacac 22616520 Query: 397 tttcacccctaaa---agctcatcttcagttgtctgtgtcaccccgtttggaccatatgc 453 |||||| ||||| | ||||||||| |||||||| | |||||||||||||||||||| Sbjct: 22616521 tttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgc 22616580 Query: 454 tgg 456 ||| Sbjct: 22616581 tgg 22616583 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 8183662 gtggcggcgcggcggcgcga 8183643
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 89 ttgctgctcggcggcagcggcc 110 |||||||||||||||||||||| Sbjct: 2920631 ttgctgctcggcggcagcggcc 2920652
>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence Length = 189253 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 tggcttgtggacaagtgtagacctg 216 ||||| ||||||||||||||||||| Sbjct: 186911 tggctagtggacaagtgtagacctg 186935
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 ccgtggcggcgcggcggcgcg 82 ||||||||||||||||||||| Sbjct: 1943402 ccgtggcggcgcggcggcgcg 1943422
>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence Length = 219799 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 tggcttgtggacaagtgtagacctg 216 ||||| ||||||||||||||||||| Sbjct: 174542 tggctagtggacaagtgtagacctg 174518
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtggcggcgcggcggcgcg 82 |||||||||||||||||||| Sbjct: 64617 cgtggcggcgcggcggcgcg 64636
>gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0117L20 map S2137, complete sequence Length = 125303 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 16254 gtggcggcgcggcggcgcga 16235
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 194451 gtggcggcgcggcggcgcga 194432
>gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosome 8, complete sequence Length = 179978 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgctgctcggcggcagcggc 109 |||||||||||||||||||| Sbjct: 71370 tgctgctcggcggcagcggc 71389
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tgctgctcggcggcagcggc 109 |||||||||||||||||||| Sbjct: 1581587 tgctgctcggcggcagcggc 1581568
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtggcggcgcggcggcgcg 82 |||||||||||||||||||| Sbjct: 113849 cgtggcggcgcggcggcgcg 113868
>ref|XM_531633.2| PREDICTED: Canis familiaris similar to CG9410-PA, isoform A (LOC474402), mRNA Length = 1500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ctctcctctccctcccaacc 174 |||||||||||||||||||| Sbjct: 885 ctctcctctccctcccaacc 904
>gb|AE014311.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 8 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 gtagacaaagagacaaagaaattg 239 ||||| |||||||||||||||||| Sbjct: 189466 gtagaaaaagagacaaagaaattg 189489
>emb|AL591847.8| Human DNA sequence from clone RP11-510L10 on chromosome 13, complete sequence Length = 171596 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 gtagacaaagagacaaagaaattg 239 ||||| |||||||||||||||||| Sbjct: 70131 gtagaaaaagagacaaagaaattg 70154
>emb|AL590808.6| Human DNA sequence from clone RP13-483F6 on chromosome X Contains a serine or cysteine proteinase inhibitor clade A (alpha-1 antiproteinase, antitrypsin) member 7 (SERPINA7) pseudogene and the 5' end of gene FLJ10178, complete sequence Length = 102184 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ggatgcacactttcacccct 406 |||||||||||||||||||| Sbjct: 99653 ggatgcacactttcacccct 99634
>emb|AL132909.1|ATT14K23 Arabidopsis thaliana DNA chromosome 3, BAC clone T14K23 Length = 101786 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 accaagctttctccgaagta 191 |||||||||||||||||||| Sbjct: 30430 accaagctttctccgaagta 30411
>gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete sequence Length = 134023 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 agggatgcacactttcacccctaa 408 |||||||| ||||||||||||||| Sbjct: 13601 agggatgcccactttcacccctaa 13578
>emb|AL732293.14| Mouse DNA sequence from clone RP23-360J13 on chromosome 11, complete sequence Length = 117779 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agaaagatcagttgtcagct 279 |||||||||||||||||||| Sbjct: 97668 agaaagatcagttgtcagct 97649
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gccgtggcggcgcggcggcg 80 |||||||||||||||||||| Sbjct: 18425112 gccgtggcggcgcggcggcg 18425131
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 21219539 gtggcggcgcggcggcgcga 21219520
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtggcggcgcggcggcgcg 82 |||||||||||||||||||| Sbjct: 17120482 cgtggcggcgcggcggcgcg 17120501
>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence Length = 156100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgctgctcggcggcagcggc 109 |||||||||||||||||||| Sbjct: 149642 tgctgctcggcggcagcggc 149661
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtggcggcgcggcggcgcga 83 |||||||||||||||||||| Sbjct: 90296 gtggcggcgcggcggcgcga 90277
>dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-160H12, complete sequence Length = 174697 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 acaagtgtagacctgtagac 221 |||||||||||||||||||| Sbjct: 81303 acaagtgtagacctgtagac 81322
>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete sequence Length = 197847 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 acaagtgtagacctgtagac 221 |||||||||||||||||||| Sbjct: 2381 acaagtgtagacctgtagac 2400
>emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in linkage group 3, complete sequence Length = 69225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttcagttgtgttggattatg 326 |||||||||||||||||||| Sbjct: 52551 ttcagttgtgttggattatg 52570
>gb|L32833.1|HUMZFHPA Homo sapiens zinc finger homeodomain protein (ATBF1-B) mRNA, 5' end Length = 1219 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgctgctcggcggcagcggc 109 |||||||||||||||||||| Sbjct: 853 tgctgctcggcggcagcggc 872
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gccgtggcggcgcggcggcg 80 |||||||||||||||||||| Sbjct: 18351338 gccgtggcggcgcggcggcg 18351357
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gccgtggcggcgcggcggcg 80 |||||||||||||||||||| Sbjct: 77011 gccgtggcggcgcggcggcg 77030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,024,370 Number of Sequences: 3902068 Number of extensions: 4024370 Number of successful extensions: 108349 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107154 Number of HSP's gapped (non-prelim): 1189 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)