ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41h01 |
|---|---|
| Clone Library Name | barley_pub |
>SLSG4_BRAOL (P17841) S-locus-specific glycoprotein S14 precursor (SLSG-14)| (Fragment) Length = 434 Score = 56.2 bits (134), Expect = 2e-08 Identities = 31/69 (44%), Positives = 40/69 (57%) Frame = +2 Query: 110 LRGNDTLVSSGAGSFVLGFFTPPGSNNTYVGVWYAKVSVRTVVWVANRADPVPGPVERNA 289 + N TLVS G F LGFF S+ Y+G+WY KVS RT VWVANR +P+ + Sbjct: 40 ISSNRTLVSPG-NVFELGFFRTNSSSRWYLGIWYKKVSDRTYVWVANRDNPLSSSI---- 94 Query: 290 RATLSVSAD 316 TL +S + Sbjct: 95 -GTLKISGN 102
>SLSG6_BRAOL (P07761) S-locus-specific glycoprotein S6 precursor (SLSG-6)| Length = 436 Score = 55.8 bits (133), Expect = 3e-08 Identities = 31/69 (44%), Positives = 41/69 (59%) Frame = +2 Query: 110 LRGNDTLVSSGAGSFVLGFFTPPGSNNTYVGVWYAKVSVRTVVWVANRADPVPGPVERNA 289 + N TLVS G +F LGFF S+ Y+G+WY K+ RT VWVANR +P+ NA Sbjct: 43 ISSNRTLVSPG-NNFELGFFRTNSSSRWYLGIWYKKLLDRTYVWVANRDNPL-----SNA 96 Query: 290 RATLSVSAD 316 TL +S + Sbjct: 97 IGTLKISGN 105
>SLSG2_BRAOA (P22553) S-locus-specific glycoprotein BS29-2 precursor| Length = 435 Score = 54.3 bits (129), Expect = 7e-08 Identities = 27/64 (42%), Positives = 37/64 (57%) Frame = +2 Query: 74 SHARDIISPGQPLRGNDTLVSSGAGSFVLGFFTPPGSNNTYVGVWYAKVSVRTVVWVANR 253 S++R ++SPG L LGFF P S+ Y+G+WY K+S RT VWVANR Sbjct: 43 SNSRTLVSPGNVLE--------------LGFFRTPSSSRWYLGMWYKKLSERTYVWVANR 88 Query: 254 ADPV 265 +P+ Sbjct: 89 DNPL 92
>SLSG3_BRAOL (P17840) S-locus-specific glycoprotein S13 precursor (SLSG-13)| (Fragment) Length = 434 Score = 53.5 bits (127), Expect = 1e-07 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = +2 Query: 110 LRGNDTLVSSGAGSFVLGFFTPPGSNNTYVGVWYAKVSVRTVVWVANRADPVPGPVERNA 289 + N TLVS G F LGFF S+ Y+G+WY K RT VWVANR +P+ + Sbjct: 42 ISSNRTLVSPG-NVFELGFFKTTSSSRWYLGIWYKKFPYRTYVWVANRDNPLSNDI---- 96 Query: 290 RATLSVSAD 316 TL +S + Sbjct: 97 -GTLKISGN 104
>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor| precursor (EC 2.7.11.1) (S-receptor kinase) (SRK) Length = 849 Score = 51.6 bits (122), Expect = 5e-07 Identities = 31/69 (44%), Positives = 42/69 (60%) Frame = +2 Query: 110 LRGNDTLVSSGAGSFVLGFFTPPGSNNTYVGVWYAKVSVRTVVWVANRADPVPGPVERNA 289 + N TLVS G+ F +GFF ++ Y+G+WY KVS RT VWVANR +P+ NA Sbjct: 44 ISSNKTLVSPGS-IFEVGFFRT--NSRWYLGMWYKKVSDRTYVWVANRDNPL-----SNA 95 Query: 290 RATLSVSAD 316 TL +S + Sbjct: 96 IGTLKISGN 104
>SLSG1_BRAOA (P22552) S-locus-specific glycoprotein BS29-1 precursor| Length = 444 Score = 46.2 bits (108), Expect = 2e-05 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 9/82 (10%) Frame = +2 Query: 92 ISPGQPLR--GNDTLVSSGAGSFVLGFF------TPPGSNNTYVGVWYAKVS-VRTVVWV 244 +SP + L N TLVS G F LGFF +P G++ Y+G+WY S RT VWV Sbjct: 32 LSPNEALTISSNKTLVSPG-DVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWV 90 Query: 245 ANRADPVPGPVERNARATLSVS 310 ANR + + N+ TL +S Sbjct: 91 ANRDNAL-----HNSMGTLKIS 107
>SLSG0_BRAOA (P22551) S-locus-specific glycoprotein precursor| Length = 444 Score = 46.2 bits (108), Expect = 2e-05 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 9/82 (10%) Frame = +2 Query: 92 ISPGQPLR--GNDTLVSSGAGSFVLGFF------TPPGSNNTYVGVWYAKVS-VRTVVWV 244 +SP + L N TLVS G F LGFF +P G++ Y+G+WY S RT VWV Sbjct: 32 LSPNEALTISSNKTLVSPG-DVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWV 90 Query: 245 ANRADPVPGPVERNARATLSVS 310 ANR + + N+ TL +S Sbjct: 91 ANRDNAL-----HNSMGTLKIS 107
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 31.2 bits (69), Expect = 0.68 Identities = 19/50 (38%), Positives = 22/50 (44%) Frame = -3 Query: 264 TGSARLATQTTVRTETLAYHTPT*VLLEPGGVKKPSTKLPAPDETSVSLP 115 T + TQT TET PT L P V+ +P PDET LP Sbjct: 372 TTTPETITQTVTPTETTTSEEPT---LAPPPVQPTRQPVPTPDETPTRLP 418
>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196| Length = 892 Score = 30.8 bits (68), Expect = 0.89 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +1 Query: 25 PATPLGVAADAPALVGFPCPGHHLAGPAAQGQR 123 PA P+ V+ +APA V P PG GP Q QR Sbjct: 474 PAAPITVSKEAPAPVAHPAPG----GPEEQWQR 502
>CRLF2_RAT (Q8R4S8) Cytokine receptor-like factor 2 precursor (Thymic stromal| lymphopoietin protein receptor) (TSLPR) Length = 360 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 86 DIISPGQPLRGNDTLVSSGAGSFVLG 163 D+I+PG P G L+S G SF++G Sbjct: 328 DVIAPGSPCLGGGALMSVGGASFLMG 353
>SYFB_LEIXX (Q6AGD6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 847 Score = 29.6 bits (65), Expect = 2.0 Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 16/85 (18%) Frame = -3 Query: 303 DRVARALRSTGPGTGSARLATQTTVRTETLAYHTPT*VLL---------------EPGGV 169 DR+ L PG G +R T +TLA + T VL EPGGV Sbjct: 497 DRIPSVLPVAPPGRGLSRAQTLRRAVAQTLADNGATEVLAFPFVGAAQNDLFGSPEPGGV 556 Query: 168 KKPSTKLPAP-DETSVSLPLSGWPG 97 P+ KL P D T+ L S PG Sbjct: 557 --PAVKLANPLDATAAYLRTSLLPG 579
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/32 (50%), Positives = 16/32 (50%) Frame = +1 Query: 22 PPATPLGVAADAPALVGFPCPGHHLAGPAAQG 117 PPA P G A AP G P PG PAA G Sbjct: 307 PPAAPGGPGAPAPGAPGAPAPG----APAAPG 334
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 19 QPPATPLGVAADAPALVGFPCPGHHLAGP 105 +P +TP A ++ AL P PGHHL P Sbjct: 258 KPHSTPAAAAQNSVALQAPPPPGHHLQTP 286
>YIA3_MYCTU (P19773) Insertion element IS986 hypothetical 13 kDa protein (ORFC)| Length = 127 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = +1 Query: 7 RGDGQPPATPLGVAADAPALVGFPCPGHHL 96 RG P P V VG PCPG H+ Sbjct: 32 RGSDPPAQDPASVGVGDKGHVGEPCPGRHI 61
>RUVX_CHRVO (Q7NR74) Putative Holliday junction resolvase (EC 3.1.-.-)| Length = 137 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 189 LLEPGGVKKPSTKLPAPDETSVSLPLSGW 103 LLE GVKK + PA D+ + L+GW Sbjct: 101 LLEEAGVKKGRKQKPALDQVAAQAILAGW 129
>PLS3_MOUSE (Q9JIZ9) Phospholipid scramblase 3 (PL scramblase 3)| (Ca(2+)-dependent phospholipid scramblase 3) Length = 296 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/34 (47%), Positives = 16/34 (47%) Frame = +1 Query: 10 GDGQPPATPLGVAADAPALVGFPCPGHHLAGPAA 111 G GQ P P V A AP FP PG GP A Sbjct: 33 GPGQAPV-PTQVPAPAPGFALFPSPGPVAPGPPA 65
>EGLN1_MOUSE (Q91YE3) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 2) (HIF-prolyl hydroxylase 2) (HIF-PH2) (HPH-2) (SM-20) Length = 400 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 183 EPGGVKKPSTKLPAPDETSVSLPLSGWPGEMMS 85 EPG P ++ P P+ S+ P G PGE +S Sbjct: 120 EPGSEDPPLSRSPGPERASL-CPAGGGPGEALS 151
>OXAL2_PONPY (Q5R7D0) Probable inner membrane protein OXA1L2, mitochondrial| precursor Length = 334 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 129 WSRPAPAVSCWASSRRRAPTTPTSG 203 W RP PA+ WA AP PTSG Sbjct: 9 WLRPLPALQLWARDPPLAP-VPTSG 32
>OXAL2_HUMAN (Q8N8Q8) Probable inner membrane protein OXA1L2, mitochondrial| precursor Length = 333 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 129 WSRPAPAVSCWASSRRRAPTTPTSG 203 W RP PA+ WA AP PTSG Sbjct: 9 WLRPLPALQLWARDLPLAP-VPTSG 32
>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2| Length = 1427 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Frame = -3 Query: 279 STGPGTGSARLATQTTVRTETLAYHTPT*VLLEPGGVKKPSTKLPAPDETSVSL-----P 115 ++GP S L T+V PT +++ G +P + P PD+T+ S P Sbjct: 1100 NSGPAASSGLLGLATSV--------LPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDP 1151 Query: 114 LSGWPGE 94 + G P E Sbjct: 1152 VPGPPTE 1158
>AKR1_CRYNE (Q5KP49) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 776 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/57 (31%), Positives = 22/57 (38%) Frame = +1 Query: 10 GDGQPPATPLGVAADAPALVGFPCPGHHLAGPAAQGQRHTGLVRRRQFRAGLLHAAG 180 G G+ A P G A P PG H+ GP + H R G+LH G Sbjct: 628 GAGEEAAGPPGAEAGPEGNALLPPPGGHVHGPQCRHGDHA-----RGHSHGVLHICG 679 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,675,094 Number of Sequences: 219361 Number of extensions: 793020 Number of successful extensions: 3019 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3016 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
