ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41g12 |
|---|---|
| Clone Library Name | barley_pub |
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 34.7 bits (78), Expect = 0.062 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = -2 Query: 281 LPLPPWRPKCWCISPRNTHERWWLRCRSSLSPKWRRLQSWSLSPILRRPT--IRTLLQGP 108 L +PP +P+ C+ P + S+L P+ R +L+P P + LL G Sbjct: 801 LQIPPEQPEAPCLPPESP--------ASALEPEPARPPLSALAPPHGSPDPPVPELLTGR 852 Query: 107 GGSPKRGDRPAGVRRGRNCPRRPAKRR 27 G S KRG R G RG N RPA+ R Sbjct: 853 G-SGKRGRRGGGGLRGINGEARPARGR 878
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 31.2 bits (69), Expect = 0.68 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 126 DPAARARGQPQTGGSARRSTPGEE 55 DP A + QPQ+GG A PG+E Sbjct: 623 DPRASGKAQPQSGGKAETKLPGQE 646
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Frame = -1 Query: 210 EMQEQSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGG---------SARRSTPGE 58 E QE + Q AE + P AE + A + G+PQ GG AR G Sbjct: 365 EPQEGGDLQEAEESQEGGDPQEAEEPQEGGAPQEGGEPQEGGDPQEAREPQEAREPQEGA 424 Query: 57 ELPQAARQTA 28 ELP+A T+ Sbjct: 425 ELPEATGTTS 434
>SC6A8_RABIT (P31661) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 113 GPGGSPKRGDRPAGVRRGRNCPRRPAKRRW 24 GP G+P +GD PAG+ C P + W Sbjct: 26 GPDGAPAKGDGPAGLGAPGGCLAVPPRETW 55
>OXAA_BRAJA (Q89BQ0) Inner membrane protein oxaA| Length = 616 Score = 30.8 bits (68), Expect = 0.89 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = -1 Query: 216 VAEMQEQSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPG---EELPQ 46 V M++Q Q A+A + + P + A PQ+GG+A+ STP + P Sbjct: 28 VPAMEKQRAQQQAQAELQKTTPQPTAS------ATPGATPQSGGAAQPSTPAAGQQAQPV 81 Query: 45 AARQTAVA 22 AR A+A Sbjct: 82 VARDAAIA 89
>IF2_BORBR (Q7WHG2) Translation initiation factor IF-2| Length = 997 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 192 EPQMAEAAILVSVPHTAEAHHKDPA-ARARGQPQTGGSARRSTPGEELPQAARQTAVAE 19 EP +AEA AE + PA A A+ +P A E P+AA AVAE Sbjct: 145 EPPVAEAPAEPVAAPAAEPQSEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAE 203
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -1 Query: 213 AEMQEQSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQ 94 A M E S P+ AE A +V A+A + ARAR +PQ Sbjct: 95 AAMPETSAPERAEEADKPAVAKPAKAPETEAHARARKEPQ 134
>RS3_DEHE1 (Q3Z975) 30S ribosomal protein S3| Length = 278 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = -1 Query: 219 VVAEMQEQSEPQMAE-AAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEELPQA 43 ++ E +EQSEP++ E AA++ P A A K A+ + T A EE P+ Sbjct: 207 ILPEAKEQSEPEVTEMAAVMADAPAAAVAEAKVADTVAKPKRVT-KKAEAEASAEEKPKR 265 Query: 42 ARQTA 28 A + A Sbjct: 266 AAKKA 270
>COAT_SLCV (P27444) Coat protein (CP)| Length = 251 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -2 Query: 203 RSSLSPKWRRLQSWSLSPILRRPTIRTLLQGPGGSPKRGDRPAGVR 66 R + PK+ + +W P+ R+P I ++GP PK + P V+ Sbjct: 26 REGMGPKFNKAAAWVNRPMYRKPRIYRTMRGP-DIPKGCEGPCKVQ 70
>IF2_BORPE (Q7VYR2) Translation initiation factor IF-2| Length = 997 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 192 EPQMAEAAILVSVPHTAEAHHKDPA-ARARGQPQTGGSARRSTPGEELPQAARQTAVAE 19 EP +AEA AE + PA A A+ +P A E P+AA AVAE Sbjct: 145 EPPVAEAPAEPVAAPAAEPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAE 203
>IF2_BORPA (Q7W9A5) Translation initiation factor IF-2| Length = 969 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 192 EPQMAEAAILVSVPHTAEAHHKDPA-ARARGQPQTGGSARRSTPGEELPQAARQTAVAE 19 EP +AEA AE + PA A A+ +P A E P+AA AVAE Sbjct: 117 EPPVAEAPAEPVAAPAAEPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAE 175
>RPOB_EHRRI (Q93MK8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1363 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = -1 Query: 198 QSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEELPQAARQTAVAE 19 + + +A+ ++V A H P + G+ G R P E++P A T V Sbjct: 1044 RGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDI 1103 Query: 18 LLN 10 +LN Sbjct: 1104 ILN 1106
>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)| Length = 513 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = -1 Query: 237 QEH--P*TVVAEMQEQSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARR 73 Q+H P VA+ Q+Q + A V H A+ H PAA +P +A++ Sbjct: 345 QQHAKPAQHVAQQQQQQHAKPAAHTAAKPVQHNAQQQHAKPAAHTAAKPVQHNAAQQ 401
>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 28.5 bits (62), Expect = 4.4 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 7/94 (7%) Frame = -1 Query: 285 APALATLEAQMLVH*PQEHP*TVVAEMQEQSEPQMAEAAILV--SVPHTAEAHHKDPAAR 112 A A A A P P T + E++ P +L P A + A Sbjct: 679 AAAAAAAAAAATAKRPPRRPETEGVPVPERASPGPPTQLVLKLKERPSPGPAAGRAARAA 738 Query: 111 ARGQPQTGGSARRST-----PGEELPQAARQTAV 25 A G GG ARR++ PG P ARQ+ + Sbjct: 739 AGGTASPGGGARRASASGPVPGRSPPAPARQSVI 772
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 180 AEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEELPQ 46 A AA +VP A +A R P +GG + S+P E P+ Sbjct: 694 AAAAAAAAVPSAGPAGPAPTSAAGRTFPASGGGYKASSPAESSPE 738
>VAS1_BOVIN (P40682) Vacuolar ATP synthase subunit S1 precursor (EC 3.6.3.14)| (V-ATPase S1 subunit) (V-ATPase S1 accessory protein) (V-ATPase Ac45 subunit) Length = 468 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -1 Query: 216 VAEMQEQSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEELPQAAR 37 +A +QE A +L+ +P+TA + P G + G + E++P A Sbjct: 158 LATLQELKLNASIPALLLIRLPYTASSGLMAPKEVLMGNDEVIGQVLSTLKSEDIPYTAA 217 Query: 36 QTAV 25 TAV Sbjct: 218 LTAV 221
>RL15E_METJA (P54060) 50S ribosomal protein L15e| Length = 194 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = -2 Query: 182 WRRLQSWSLSPI---LRRPTIRTLLQGPGGSPKRGDRPAGVRRGRNCPRRP 39 W RLQ W P + RPT + G PK+G VR R R+P Sbjct: 24 WERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKP 74
>IF2_TROWT (Q83GT8) Translation initiation factor IF-2| Length = 803 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 152 PILRRPTIRTLLQG-PGGSPKRGDRPAGVRRG 60 P L RP IR ++G P G+P+ G+ P R+G Sbjct: 88 PPLPRPIIRHAVRGVPSGAPRPGNNPYAPRQG 119
>IF2_TROW8 (Q83HG7) Translation initiation factor IF-2| Length = 803 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 152 PILRRPTIRTLLQG-PGGSPKRGDRPAGVRRG 60 P L RP IR ++G P G+P+ G+ P R+G Sbjct: 88 PPLPRPIIRHAVRGVPSGAPRPGNNPYAPRQG 119
>SC6A8_RAT (P28570) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (CHOT1) (Solute carrier family 6 member 8) Length = 635 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -2 Query: 122 LLQGPGGSPKRGDRPAGVRRGRNCPRRPAKRRW 24 ++ GP G+P +GD PAG+ + P + W Sbjct: 23 IVSGPDGAPSKGDGPAGLGAPSSRLAVPPRETW 55
>TIM14_YARLI (Q6CEU0) Mitochondrial import inner membrane translocase subunit| TIM14 (Presequence translocated-associated motor subunit PAM18) Length = 148 Score = 28.5 bits (62), Expect = 4.4 Identities = 20/46 (43%), Positives = 23/46 (50%) Frame = -1 Query: 189 PQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEEL 52 P A AA LV + + A K PAA ARGQ GG + P E L Sbjct: 50 PVQATAATLVGL-YALGAVFKRPAAGARGQFFKGGFENKMGPSEAL 94
>GYRA_MYCXE (P72065) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mxe gyrA| intein] (Fragment) Length = 327 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -1 Query: 198 QSEPQMAEAAILVSVPHTA---EAHHKDPAARARGQPQTGG 85 + +P+ A V VP EAHH+DP A+A T G Sbjct: 184 RGKPEFAPTTYTVGVPGLVRFLEAHHRDPDAQAIADELTDG 224
>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat| protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182 autoantigen) (GW1 protein) (EMSY interactor protein) Length = 1962 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Frame = -2 Query: 251 WCISPRNTHERWWLRCRSSLS-PKWRRLQ----SWSLSPILRRPTIRTLLQGPGGSPKRG 87 W P++ W +S P W + Q SW + P +P L GP +P + Sbjct: 922 WGDPPKSNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGWLGGPIPAPAKE 981 Query: 86 DRPAG 72 + P G Sbjct: 982 EEPTG 986
>PRT_ANTGR (P17502) Protamine| Length = 132 Score = 28.1 bits (61), Expect = 5.8 Identities = 25/98 (25%), Positives = 36/98 (36%) Frame = -2 Query: 308 RHSHSSWSRLPLPPWRPKCWCISPRNTHERWWLRCRSSLSPKWRRLQSWSLSPILRRPTI 129 R H W + + KCWC ++++ + S L + RR RR + Sbjct: 60 RKKHCGWPQCRIAIEGAKCWCKMSGRDRKKYYNQACSMLKKRGRR---------RRRRSC 110 Query: 128 RTLLQGPGGSPKRGDRPAGVRRGRNCPRRPAKRRWRSC 15 R RR R+C RR +RR RSC Sbjct: 111 R-------------------RRRRSCRRR--RRRRRSC 127
>MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) (Atrophin-1-interacting protein 3) (AIP3) (WW domain-containi Length = 1491 Score = 28.1 bits (61), Expect = 5.8 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Frame = -2 Query: 236 RNTHERWWLRCRSSLSPKWRRLQSWSL----SPILRRPTIRTLLQGP-------GGSPKR 90 R HE+ R +SP+ RR +S + SP RR ++ LL+ GGSP+R Sbjct: 1369 REKHEK-----RRDVSPERRRERSPTRRRDGSPSRRRRSLERLLEQRRSPERRRGGSPER 1423 Query: 89 GDRPAGVRRGRNCPRRPAKRRWRS 18 + RR R+ P +RR RS Sbjct: 1424 RAKSTDRRRARS----PERRRERS 1443
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -2 Query: 200 SSLSPKWRRLQSWSLSPILRRPTIRTLLQGPGGSPKRGDRPAGVRRGRNCPRRPAKR 30 SSL P+ + S + R+ T +GP PK+ P G+ P P+KR Sbjct: 2318 SSLLPQMTKSPSSMTLTVSRQNPPDTSNKGPSPDPKKSLVPVGIPTSTVSPASPSKR 2374
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 27.7 bits (60), Expect = 7.5 Identities = 28/76 (36%), Positives = 33/76 (43%) Frame = -2 Query: 245 ISPRNTHERWWLRCRSSLSPKWRRLQSWSLSPILRRPTIRTLLQGPGGSPKRGDRPAGVR 66 ISP ER R + S SP RR L R P R GGSP+R + R Sbjct: 1358 ISPERKRERSPTRRKDS-SPSRRRRSLERLLDQRRSPERRR-----GGSPERRAKSTDRR 1411 Query: 65 RGRNCPRRPAKRRWRS 18 R R+ P +RR RS Sbjct: 1412 RARS----PERRRERS 1423
>GCF_HUMAN (P16383) GC-rich sequence DNA-binding factor (GCF) (Transcription| factor 9) (TCF-9) Length = 784 Score = 27.7 bits (60), Expect = 7.5 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -2 Query: 221 RWWLRCRSSLSPKWRRLQSWSLSPILRRPTIRTLLQGPGGSPKRGDRPAGVRRGRNCPRR 42 R WL R L R + + +++P R+ L G +RG+ + V R ++ P Sbjct: 40 RPWLTGRKGLFGSARLIPATAMAP-------RSRLLSLG---RRGNFRSRVLRRKSRPLE 89 Query: 41 PAKRRWRSC 15 A RRWR C Sbjct: 90 EAARRWRDC 98
>FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 activity) (MoKA)| Length = 1194 Score = 27.7 bits (60), Expect = 7.5 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%) Frame = -2 Query: 260 PKCWCISPRNTHERWWLRCRSSLSPKWRRLQSWSLSPILRRP-TIRTLLQGPGGSPKRGD 84 P+C C+ P+ + R RC P R + + R + RTL QG P + Sbjct: 780 PRCCCLRPQESQRRTG-RCSDEERPSTSRACVVNGADGTRSAFSFRTLPQGGSSGPAHDE 838 Query: 83 RPAGVRRGRNCPRRPAKRRWRSC*IRS 3 R G G R + SC ++S Sbjct: 839 RTNGSGCGATGEDRRGSSQPESCDVQS 865
>METE_STRAW (Q82LG4) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 772 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = -1 Query: 129 KDPAARARGQPQTGGSARRSTPGEELPQAARQTAVAELLNT 7 +DPA R+R T ARRS P E A R LL T Sbjct: 403 RDPAVRSRTAATTDADARRSGPYPERAAAQRARLGLPLLPT 443
>DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B)| (Dynamin-like protein 3) Length = 920 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 132 HKDPAARARGQPQTGGSARRSTPGEELPQAARQT 31 + DPA +GGS+RR+TP LP A Q+ Sbjct: 882 YSDPAQNGEDSSGSGGSSRRTTP-NRLPPAPPQS 914
>RPOB_EHRSE (Q93MK9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/63 (25%), Positives = 26/63 (41%) Frame = -1 Query: 198 QSEPQMAEAAILVSVPHTAEAHHKDPAARARGQPQTGGSARRSTPGEELPQAARQTAVAE 19 + + +A+ ++V A H P + G+ G R P E+ P A T V Sbjct: 1039 RGDDDLAQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRIVPAEDTPYLADGTPVDI 1098 Query: 18 LLN 10 +LN Sbjct: 1099 ILN 1101
>STRL_STRGR (P29781) dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)| (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase) Length = 304 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 113 GPGGSPKRGDRPAGVRRGRNCPRRPAKR 30 G GG P R D P G R C +R +R Sbjct: 113 GSGGRPYREDHPTGPRTVYGCTKRAGER 140
>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)| Length = 520 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = -2 Query: 116 QGPGGSPKRGDRPAGVRRGRNC--PRRPAKRRWRS 18 Q P +P +G G R+ ++C P++P K R RS Sbjct: 431 QAPRSAPYKGSEIRGSRKSKDCKYPQKPHKSRSRS 465
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 10/42 (23%) Frame = -1 Query: 120 AARARG---QPQTGGSARRS-------TPGEELPQAARQTAV 25 AARA G P GG ARR+ TPG P ARQ+ + Sbjct: 740 AARAAGGAASPGPGGGARRAAPGTGGPTPGRSPPAPARQSVI 781
>SC6A8_MOUSE (Q8VBW1) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 640 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -2 Query: 122 LLQGPGGSPKRGDRPAGVRRGRNCPRRPAKRRW 24 ++ GP G+P +GD PAG+ P + W Sbjct: 23 IVSGPDGAPAKGDGPAGLGAPGGRLAVPPRETW 55
>RSBP_BACSU (O07014) Phosphoserine phosphatase rsbP (EC 3.1.3.3)| Length = 403 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 237 QEHP*TVVAEMQEQSEPQMAEAAILVSVPHTAEAHHK 127 ++HP + +A+++E+ IL S+ H EAHHK Sbjct: 364 KDHPDSPIADLKEK---------ILTSLQHQKEAHHK 391
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 27.3 bits (59), Expect = 9.9 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = -2 Query: 272 PPWRPKCWCISPRNTHERWWLRCR--SSLSPKWRRLQSWSLSPILRRPTIRTLLQGPGGS 99 PP P+ W R +R W + R P L P+LR T PG S Sbjct: 696 PPHHPRRWVSQQR---QRLWRQFRVGGGFPPPPPTRPPPVLLPLLRL----TCAGDPGAS 748 Query: 98 PKRGDRPAGVRRGRNCPRRPA 36 RPA RG P+RP+ Sbjct: 749 RPGSRRPARRPRGELTPQRPS 769
>MUTS_THEAQ (Q56215) DNA mismatch repair protein mutS| Length = 811 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -2 Query: 191 SPKWRRLQSWSLSPILRRPTIRTLLQGPGGSPKRGDRPAGVRR 63 +P R LQSW P+L R + L G + G GVRR Sbjct: 282 APGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRR 324
>PILS_PSEAE (P33639) Sensor protein pilS (EC 2.7.13.3)| Length = 530 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -2 Query: 173 LQSWSLSPILRRPTIRTLLQGPGGSP 96 ++ W L+P LR PT++ + GP P Sbjct: 250 MKQWRLNPSLRPPTLKVVPDGPTVQP 275
>METE_STRCO (Q93J59) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 772 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 129 KDPAARARGQPQTGGSARRSTPGEELPQAAR 37 ++PA RAR + T ARRS P E A R Sbjct: 403 RNPAVRARAEAVTDDDARRSQPYAERTAAQR 433
>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein| Length = 1556 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = -1 Query: 210 EMQEQSEPQMAEAAILVSVPHTAEAHHKDPAAR-ARGQPQTGGSARRSTPGEELPQAARQ 34 + Q+Q + Q + L H + HH+ P + Q G+ S+PG L A Q Sbjct: 839 QQQQQQQQQQQQHQQLQQHGHQQQPHHQHPLQMLSNSQTSIAGNQYMSSPG-GLQHAQSQ 897 Query: 33 TAVA 22 T++A Sbjct: 898 TSMA 901
>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25| Length = 520 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 102 QPQTGGSARRSTPGEELPQAARQTAVAEL 16 +P GGSAR EE Q ARQ + E+ Sbjct: 411 RPSNGGSARNREEDEERKQQARQLKLQEM 439 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,665,171 Number of Sequences: 219361 Number of extensions: 699588 Number of successful extensions: 2728 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 2612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2726 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
