Clone Name | bastl41g12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 171 cagcctccgccatttggggctcagactgctcctgcatctcagccaccaccgttcatggg 229 ||||||||||| |||||||||||| |||| || | || |||||||| ||||||||||| Sbjct: 13873293 cagcctccgccttttggggctcaggctgcgccgtcgtcccagccacctccgttcatggg 13873235
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 171 cagcctccgccatttggggctcagactgctcctgcatctcagccaccaccgttcatggg 229 ||||||||||| |||||||||||| |||| || | || |||||||| ||||||||||| Sbjct: 13827573 cagcctccgccttttggggctcaggctgcgccgtcgtcccagccacctccgttcatggg 13827515
>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 50021 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 171 cagcctccgccatttggggctcagactgctcctgcatctcagccaccaccgttcatggg 229 ||||||||||| |||||||||||| |||| || | || |||||||| ||||||||||| Sbjct: 42096 cagcctccgccttttggggctcaggctgcgccgtcgtcccagccacctccgttcatggg 42038
>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144552 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 171 cagcctccgccatttggggctcagactgctcctgcatctcagccaccaccgttcatggg 229 ||||||||||| |||||||||||| |||| || | || |||||||| ||||||||||| Sbjct: 9921 cagcctccgccttttggggctcaggctgcgccgtcgtcccagccacctccgttcatggg 9863
>gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence Length = 154295 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 ccgcagtatgggggacagagaccag 165 ||||||| ||||||||||||||||| Sbjct: 19450 ccgcagtttgggggacagagaccag 19474
>emb|AL139187.19| Human DNA sequence from clone RP11-81F11 on chromosome 13 Contains a gene for a novel protein similar to RhoGAP, complete sequence Length = 166329 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gacagagaccaggattgcagc 174 ||||||||||||||||||||| Sbjct: 82324 gacagagaccaggattgcagc 82344
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 caccaccgttcatgggtgttc 234 ||||||||||||||||||||| Sbjct: 11868846 caccaccgttcatgggtgttc 11868866
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 ccgccaccgccgtttggcgggccgc 45 ||||||| ||||||||||||||||| Sbjct: 735451 ccgccactgccgtttggcgggccgc 735427
>dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0734C01 Length = 163208 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 caccaccgttcatgggtgttc 234 ||||||||||||||||||||| Sbjct: 28201 caccaccgttcatgggtgttc 28221
>dbj|AP005805.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0006M19 Length = 144073 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 caccaccgttcatgggtgttc 234 ||||||||||||||||||||| Sbjct: 136741 caccaccgttcatgggtgttc 136761
>emb|Z73358.1|HS65O19 Human DNA sequence from clone RP1-65O19 on chromosome 13. Contains the 5' end of the gene for a novel RhoGAP domain protein, ESTs, STSs and GSSs, complete sequence Length = 95274 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gacagagaccaggattgcagc 174 ||||||||||||||||||||| Sbjct: 22672 gacagagaccaggattgcagc 22652
>gb|AC123673.7| Mus musculus chromosome 1, clone RP23-258D13, complete sequence Length = 191401 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gctaatgcaccagcatttgg 259 |||||||||||||||||||| Sbjct: 11438 gctaatgcaccagcatttgg 11457
>gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, complete sequence Length = 53089 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 48604 tgctcctgcatctcagccac 48585
>ref|XM_470495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 1338 cagcagctccgccaccgccg 1319
>gb|AC131336.9| Mus musculus chromosome 1, clone RP23-96A20, complete sequence Length = 121355 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gctaatgcaccagcatttgg 259 |||||||||||||||||||| Sbjct: 9923 gctaatgcaccagcatttgg 9904
>gb|AC147379.3| Pan troglodytes BAC clone RP43-175C18 from 7, complete sequence Length = 219482 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagagaccaggattgcagcc 175 |||||||||||||||||||| Sbjct: 197043 cagagaccaggattgcagcc 197062
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 35935533 cagcagctccgccaccgccg 35935552
>gb|AC006333.3| Homo sapiens BAC clone RP11-390E23 from 7, complete sequence Length = 187532 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagagaccaggattgcagcc 175 |||||||||||||||||||| Sbjct: 27867 cagagaccaggattgcagcc 27886
>gb|AC146226.2| Pan troglodytes BAC clone RP43-32H9 from 7, complete sequence Length = 164327 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagagaccaggattgcagcc 175 |||||||||||||||||||| Sbjct: 67844 cagagaccaggattgcagcc 67863
>emb|AL357992.14| Human DNA sequence from clone RP11-162J8 on chromosome 6 Contains the 3' end of the UST gene for uronyl-2-sulfotransferase and two novel genes, complete sequence Length = 155030 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 acagagaccaggattgcagcctcc 178 ||||||||||||||| |||||||| Sbjct: 140843 acagagaccaggatttcagcctcc 140866
>emb|AL031027.1|DMC80H7 Drosophila melanogaster cosmid clone 80H7 Length = 45861 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 27060 tgctcctgcatctcagccac 27079
>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181360 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 169638 tgctcctgcatctcagccac 169657
>gb|AF381249.1| Drosophila melanogaster NMDA receptor 2 (nmdar2) mRNA, complete cds Length = 3017 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 290 tgctcctgcatctcagccac 271
>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence Length = 177578 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cagagaccaggattgcagcc 175 |||||||||||||||||||| Sbjct: 127411 cagagaccaggattgcagcc 127430
>ref|NM_001014716.1| Drosophila melanogaster NMDA receptor 2 CG33513-RA, transcript variant A (Nmdar2), mRNA Length = 3131 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 397 tgctcctgcatctcagccac 378
>ref|NM_001014715.1| Drosophila melanogaster NMDA receptor 2 CG33513-RB, transcript variant B (Nmdar2), mRNA Length = 3474 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 740 tgctcctgcatctcagccac 721
>ref|NM_001014714.1| Drosophila melanogaster NMDA receptor 2 CG33513-RC, transcript variant C (Nmdar2), mRNA Length = 4180 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 1446 tgctcctgcatctcagccac 1427
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 25592 cagcagctccgccaccgccg 25573
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 36025663 cagcagctccgccaccgccg 36025682
>gb|AY616149.1| Drosophila melanogaster NMDA receptor subunit 2-3 mRNA, complete cds Length = 4671 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 1447 tgctcctgcatctcagccac 1428
>gb|AY616148.1| Drosophila melanogaster NMDA receptor subunit 2-2 mRNA, complete cds Length = 4174 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 1447 tgctcctgcatctcagccac 1428
>gb|AY616147.1| Drosophila melanogaster NMDA receptor subunit 2-1f mRNA, complete cds Length = 3181 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 454 tgctcctgcatctcagccac 435
>gb|AY616146.1| Drosophila melanogaster NMDA receptor subunit 2-1e mRNA, complete cds Length = 3191 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 464 tgctcctgcatctcagccac 445
>gb|AY616145.1| Drosophila melanogaster NMDA receptor subunit 2-1d mRNA, complete cds Length = 3706 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 979 tgctcctgcatctcagccac 960
>gb|AY616144.1| Drosophila melanogaster NMDA receptor subunit 2-1c mRNA, complete cds Length = 3448 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 721 tgctcctgcatctcagccac 702
>gb|AY050491.1| Drosophila melanogaster glutamate NMDA receptor subunit variant NR2-b mRNA, complete cds Length = 3467 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 740 tgctcctgcatctcagccac 721
>gb|AY050490.1| Drosophila melanogaster glutamate NMDA receptor subunit variant NR2-a mRNA, complete cds Length = 3124 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 397 tgctcctgcatctcagccac 378
>emb|BX647381.1|HSM807526 Homo sapiens mRNA; cDNA DKFZp686A2436 (from clone DKFZp686A2436) Length = 3638 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 acagagaccaggattgcagcctcc 178 ||||||||||||||| |||||||| Sbjct: 655 acagagaccaggatttcagcctcc 632
>dbj|AK102241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088D07, full insert sequence Length = 1759 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 1394 cagcagctccgccaccgccg 1375
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgctcctgcatctcagccac 216 |||||||||||||||||||| Sbjct: 32222 tgctcctgcatctcagccac 32241
>dbj|D84401.1| Homo sapiens genomic DNA, 43 kb segment from chromosome6, complete sequence Length = 42398 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcagctccgccaccgccg 32 |||||||||||||||||||| Sbjct: 34821 cagcagctccgccaccgccg 34840 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,460,393 Number of Sequences: 3902068 Number of extensions: 2460393 Number of successful extensions: 46703 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46559 Number of HSP's gapped (non-prelim): 144 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)