ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 38 0.006
2ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1)... 28 6.7
3METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2.... 28 8.7

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 141 MLTATKPLVGGACAAPS 191
           MLTATKPLVGGACAAPS
Sbjct: 1   MLTATKPLVGGACAAPS 17



to top

>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 644

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 108 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 4
           T W  +  RL W +P  +VQ C   +GK    +G+
Sbjct: 37  TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71



to top

>METB_HERAU (P24601) Probable cystathionine gamma-synthase (EC 2.5.1.48) (CGS)|
           (O-succinylhomoserine (thiol)-lyase) (Fragment)
          Length = 319

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 170 PD*RLGRRQHRGYATVLAIALRDGAEGCTVLV 75
           P   L R Q RG+  +++I L+ GAE    +V
Sbjct: 283 PQHNLAREQMRGFGGMISILLKGGAEAANAMV 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,656,689
Number of Sequences: 219361
Number of extensions: 562758
Number of successful extensions: 1262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top