ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 41 9e-04
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 40 0.001
3SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 28 7.8
4RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5 28 7.8

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 21/34 (61%), Positives = 21/34 (61%)
 Frame = +1

Query: 193 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXDA 294
           MLPRKREIVAGEVEDLQKK             DA
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDA 34



to top

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 193 MLPRKREIVAGEVEDLQKK 249
           MLPRKREIVAGEVEDLQKK
Sbjct: 1   MLPRKREIVAGEVEDLQKK 19



to top

>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 258

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 34  SPASFPDATGESKVSRRSHALDLT 105
           +P    DATGE  V+R SHA D+T
Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195



to top

>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5|
          Length = 187

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 186 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 16
           R+   +  D R R E     D    + R  + V+  +  GFA  V  G +RG V  G
Sbjct: 4   RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,783,371
Number of Sequences: 219361
Number of extensions: 412103
Number of successful extensions: 1489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top