ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome... 40 1.1
2ref|XM_541589.2| PREDICTED: Canis familiaris similar to capicua ... 40 1.1
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.1
5gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 38 4.3
6emb|CR555306.1| Azoarcus sp. EbN1 complete genome 38 4.3
7dbj|AB164632.1| Streptomyces griseus AdBS3 gene cluster (orf1-Ad... 38 4.3
8gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 38 4.3

>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0072N24 map C61883S, complete sequence
          Length = 163337

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     ccagagcncgatccacctccgcc 23
             ||||||| |||||||||||||||
Sbjct: 45304 ccagagctcgatccacctccgcc 45326



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>ref|XM_541589.2| PREDICTED: Canis familiaris similar to capicua homolog (LOC484475),
            mRNA
          Length = 8171

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cccacacgccgacgccctcc 63
            ||||||||||||||||||||
Sbjct: 1982 cccacacgccgacgccctcc 2001



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 1       ccagagcncgatccacctccgcc 23
               ||||||| |||||||||||||||
Sbjct: 9951523 ccagagctcgatccacctccgcc 9951545



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 1        ccagagcncgatccacctccgcc 23
                ||||||| |||||||||||||||
Sbjct: 10023220 ccagagctcgatccacctccgcc 10023242



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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     cacgccgacgccctccggc 66
              |||||||||||||||||||
Sbjct: 636668 cacgccgacgccctccggc 636650



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      gccgacgccctccggcgcg 69
               |||||||||||||||||||
Sbjct: 3901151 gccgacgccctccggcgcg 3901169



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>dbj|AB164632.1| Streptomyces griseus AdBS3 gene cluster (orf1-AdBS3, orfA-AdBS3,
            orfB-AdBS3), complete cds
          Length = 3987

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   gccgacgccctccggcgcg 69
            |||||||||||||||||||
Sbjct: 3195 gccgacgccctccggcgcg 3177



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 49     acgccgacgccctccggcgcggg 71
              ||||||||||| |||||||||||
Sbjct: 758965 acgccgacgccttccggcgcggg 758987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,161
Number of Sequences: 3902068
Number of extensions: 309161
Number of successful extensions: 22966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22855
Number of HSP's gapped (non-prelim): 111
length of query: 98
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 77
effective length of database: 17,151,101,840
effective search space: 1320634841680
effective search space used: 1320634841680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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