Clone Name | bastl41g05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK070919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M17, full insert sequence Length = 1536 Score = 236 bits (119), Expect = 4e-59 Identities = 185/207 (89%) Strand = Plus / Plus Query: 169 cgcggccggcggcggccggctccggaacgccctgggcggcgcgctgtgcgctttcgccct 228 ||||||||||||| |||| ||||| |||||| || |||| ||||||||| ||| |||| Sbjct: 95 cgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccct 154 Query: 229 cctcctcatcggcgtcctcgccttctccatccgcctcttctccgtgatcaagtacgagag 288 ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 155 cctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgtgattaagtacgagag 214 Query: 289 cgtgatccacgagttcgatccctacttcaactaccgcgtcacccagtttctgtcaaagag 348 |||||||||||||||||| ||||||||||||| ||||||||| |||||| |||| |||| Sbjct: 215 cgtgatccacgagttcgacccctacttcaacttccgcgtcactcagtttttgtcgaagaa 274 Query: 349 tggagtctacgagttttggaactggtt 375 ||| |||||||||| ||||||||||| Sbjct: 275 tgggatctacgagttctggaactggtt 301
>dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full insert sequence Length = 2758 Score = 236 bits (119), Expect = 4e-59 Identities = 185/207 (89%) Strand = Plus / Plus Query: 169 cgcggccggcggcggccggctccggaacgccctgggcggcgcgctgtgcgctttcgccct 228 ||||||||||||| |||| ||||| |||||| || |||| ||||||||| ||| |||| Sbjct: 95 cgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccct 154 Query: 229 cctcctcatcggcgtcctcgccttctccatccgcctcttctccgtgatcaagtacgagag 288 ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 155 cctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgtgattaagtacgagag 214 Query: 289 cgtgatccacgagttcgatccctacttcaactaccgcgtcacccagtttctgtcaaagag 348 |||||||||||||||||| ||||||||||||| ||||||||| |||||| |||| |||| Sbjct: 215 cgtgatccacgagttcgacccctacttcaacttccgcgtcactcagtttttgtcgaagaa 274 Query: 349 tggagtctacgagttttggaactggtt 375 ||| |||||||||| ||||||||||| Sbjct: 275 tgggatctacgagttctggaactggtt 301
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 169 cgcggccggcggcggccggctccggaacgccctgggcggcgcgctgtgcgctttcgccct 228 ||||||||||||| |||| ||||| |||||| || |||| ||||||||| ||| |||| Sbjct: 133145 cgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccct 133086 Query: 229 cctcctcatcggcgtcctcgccttctccatccgcctcttctccgt 273 ||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 133085 cctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgt 133041 Score = 93.7 bits (47), Expect = 4e-16 Identities = 56/59 (94%) Strand = Plus / Minus Query: 272 gtgatcaagtacgagagcgtgatccacgagttcgatccctacttcaactaccgcgtcac 330 ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 132915 gtgattaagtacgagagcgtgatccacgagttcgacccctacttcaacttccgcgtcac 132857 Score = 40.1 bits (20), Expect = 5.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 332 cagtttctgtcaaagagtggagtctacgagttttggaactggtt 375 |||||| |||| |||| ||| |||||||||| ||||||||||| Sbjct: 132582 cagtttttgtcgaagaatgggatctacgagttctggaactggtt 132539
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 169 cgcggccggcggcggccggctccggaacgccctgggcggcgcgctgtgcgctttcgccct 228 ||||||||||||| |||| ||||| |||||| || |||| ||||||||| ||| |||| Sbjct: 29107 cgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccct 29048 Query: 229 cctcctcatcggcgtcctcgccttctccatccgcctcttctccgt 273 ||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 29047 cctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgt 29003 Score = 93.7 bits (47), Expect = 4e-16 Identities = 56/59 (94%) Strand = Plus / Minus Query: 272 gtgatcaagtacgagagcgtgatccacgagttcgatccctacttcaactaccgcgtcac 330 ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 28877 gtgattaagtacgagagcgtgatccacgagttcgacccctacttcaacttccgcgtcac 28819 Score = 40.1 bits (20), Expect = 5.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 332 cagtttctgtcaaagagtggagtctacgagttttggaactggtt 375 |||||| |||| |||| ||| |||||||||| ||||||||||| Sbjct: 28544 cagtttttgtcgaagaatgggatctacgagttctggaactggtt 28501
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 169 cgcggccggcggcggccggctccggaacgccctgggcggcgcgctgtgcgctttcgccct 228 ||||||||||||| |||| ||||| |||||| || |||| ||||||||| ||| |||| Sbjct: 25616738 cgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccct 25616679 Query: 229 cctcctcatcggcgtcctcgccttctccatccgcctcttctccgt 273 ||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 25616678 cctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgt 25616634 Score = 93.7 bits (47), Expect = 4e-16 Identities = 56/59 (94%) Strand = Plus / Minus Query: 272 gtgatcaagtacgagagcgtgatccacgagttcgatccctacttcaactaccgcgtcac 330 ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct: 25616508 gtgattaagtacgagagcgtgatccacgagttcgacccctacttcaacttccgcgtcac 25616450 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcctcgc 249 |||||||||| ||||||||||||| Sbjct: 26415328 cctcctcctcctcggcgtcctcgc 26415351 Score = 40.1 bits (20), Expect = 5.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 332 cagtttctgtcaaagagtggagtctacgagttttggaactggtt 375 |||||| |||| |||| ||| |||||||||| ||||||||||| Sbjct: 25616175 cagtttttgtcgaagaatgggatctacgagttctggaactggtt 25616132
>ref|XM_474333.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2166 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 128 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 187 Query: 318 actaccgc 325 |||||||| Sbjct: 188 actaccgc 195
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 148858 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 148799 Query: 318 actaccgc 325 |||||||| Sbjct: 148798 actaccgc 148791
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 34531374 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 34531315 Query: 318 actaccgc 325 |||||||| Sbjct: 34531314 actaccgc 34531307 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 25209215 ggcccgctccaccgcggccggcggcggc 25209188
>dbj|AK099138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054H04, full insert sequence Length = 2756 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 218 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 277 Query: 318 actaccgc 325 |||||||| Sbjct: 278 actaccgc 285
>dbj|AK067609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112I09, full insert sequence Length = 2819 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 264 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 323 Query: 318 actaccgc 325 |||||||| Sbjct: 324 actaccgc 331
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 258 tccgcctcttctccgtgatcaagtacgagagcgtgatccacgagttcgatccctacttca 317 ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||| Sbjct: 67879 tccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttca 67820 Query: 318 actaccgc 325 |||||||| Sbjct: 67819 actaccgc 67812
>ref|XM_310665.2| Anopheles gambiae str. PEST ENSANGP00000020753 (ENSANGG00000018264), partial mRNA Length = 2488 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 283 cgagagcgtgatccacgagttcgatccctacttcaactaccgc 325 ||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 132 cgagagcgtcatccacgagttcgatccgtactttaactaccgc 174
>gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete sequence Length = 166908 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 287 agcgtgatccacgagttcgatccctacttcaactaccgc 325 ||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 35245 agcgtaatccatgagttcgatccgtacttcaactaccgc 35207
>ref|NM_134581.1| Drosophila melanogaster CG1518-RA (CG1518), mRNA Length = 2855 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 287 agcgtgatccacgagttcgatccctacttcaactaccgc 325 ||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 545 agcgtaatccatgagttcgatccgtacttcaactaccgc 583
>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete sequence Length = 283558 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 287 agcgtgatccacgagttcgatccctacttcaactaccgc 325 ||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 131477 agcgtaatccatgagttcgatccgtacttcaactaccgc 131439
>ref|NM_103136.3| Arabidopsis thaliana STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase AT1G34130 (STT3B) mRNA, complete cds Length = 2520 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 354 tctacgagttttggaactggttcga 378 ||||||||||||||||||||||||| Sbjct: 373 tctacgagttttggaactggttcga 397 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccg 324 |||||||||| |||||||| || ||||||||||| Sbjct: 310 tgatccacgaattcgatccgtatttcaactaccg 343
>gb|AC151824.12| Medicago truncatula clone mth2-45n18, complete sequence Length = 99140 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 278 aagtacgagagcgtgatccacgagttcgatccctacttcaactac 322 |||||||||||||| || || || |||||||| |||||||||||| Sbjct: 8167 aagtacgagagcgttattcatgaattcgatccttacttcaactac 8211
>gb|AC157490.18| Medicago truncatula clone mth2-123f23, complete sequence Length = 106571 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 278 aagtacgagagcgtgatccacgagttcgatccctacttcaactac 322 |||||||||||||| || || || |||||||| |||||||||||| Sbjct: 65285 aagtacgagagcgttattcatgaattcgatccttacttcaactac 65329
>emb|BX816490.1|CNS0ADYZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2419 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 354 tctacgagttttggaactggttcga 378 ||||||||||||||||||||||||| Sbjct: 373 tctacgagttttggaactggttcga 397 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccg 324 |||||||||| |||||||| || ||||||||||| Sbjct: 310 tgatccacgaattcgatccgtatttcaactaccg 343
>gb|AC015446.4|AC015446 Arabidopsis thaliana chromosome I BAC F12G12 genomic sequence, complete sequence Length = 125632 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 354 tctacgagttttggaactggttcga 378 ||||||||||||||||||||||||| Sbjct: 27113 tctacgagttttggaactggttcga 27089 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Minus Query: 291 tgatccacgagttcgatccctacttcaactaccg 324 |||||||||| |||||||| || ||||||||||| Sbjct: 27176 tgatccacgaattcgatccgtatttcaactaccg 27143
>ref|XM_324417.1| Neurospora crassa OR74A predicted protein (NCU05061.1) partial mRNA Length = 1158 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 234 tcatcggcgtcctcgccttctccatccgcctcttct 269 |||||||| ||||||||||||||||| |||||||| Sbjct: 817 tcatcggctccctcgccttctccatccacctcttct 852
>ref|XM_951342.1| Neurospora crassa OR74A hypothetical protein (NCU05061.1) partial mRNA Length = 1158 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 234 tcatcggcgtcctcgccttctccatccgcctcttct 269 |||||||| ||||||||||||||||| |||||||| Sbjct: 817 tcatcggctccctcgccttctccatccacctcttct 852
>gb|BT012881.1| Lycopersicon esculentum clone 113982F, mRNA sequence Length = 2555 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 356 tacgagttttggaactggttcgac 379 |||||||||||||||||||||||| Sbjct: 407 tacgagttttggaactggttcgac 430
>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20 Length = 74452 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 234 tcatcggcgtcctcgccttctccatccgcctcttct 269 |||||||| ||||||||||||||||| |||||||| Sbjct: 6540 tcatcggctccctcgccttctccatccacctcttct 6575
>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172752 Score = 46.1 bits (23), Expect = 0.084 Identities = 29/31 (93%) Strand = Plus / Minus Query: 226 cctcctcctcatcggcgtcctcgccttctcc 256 |||||||||| ||| |||||||||||||||| Sbjct: 59407 cctcctcctcttcgtcgtcctcgccttctcc 59377
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 46.1 bits (23), Expect = 0.084 Identities = 32/35 (91%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgccttctcc 256 ||||| |||||||||||| |||||||||| ||||| Sbjct: 164702 tcgccttcctcctcatcgccgtcctcgccctctcc 164668
>ref|XM_507841.1| PREDICTED: Pan troglodytes LOC450518 (LOC450518), mRNA Length = 2190 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1826 tcgccctcctcctcctcggcctcctcgcct 1797
>ref|NM_014767.1| Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 (SPOCK2), mRNA Length = 5316 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1554 tcgccctcctcctcctcggcctcctcgcct 1525
>gb|BC063234.1| Danio rerio integral membrane protein 1, mRNA (cDNA clone MGC:77796 IMAGE:7001298), complete cds Length = 2567 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 283 cgagagcgtgatccacgagttcgatccctacttcaactaccg 324 ||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct: 192 cgagagcgtcatccacgagtttgatccgtatttcaattaccg 233
>gb|BC046072.1| Danio rerio integral membrane protein 1, mRNA (cDNA clone MGC:56322 IMAGE:5603532), complete cds Length = 2608 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 283 cgagagcgtgatccacgagttcgatccctacttcaactaccg 324 ||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct: 232 cgagagcgtcatccacgagtttgatccgtatttcaattaccg 273
>ref|XM_444781.1| Candida glabrata CBS138 hypothetical protein (CAGL0A00209g) partial mRNA Length = 2181 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 357 acgagttttggaactggttcgacgatcgaacatg 390 ||||||| | |||||||||||||||| ||||||| Sbjct: 197 acgagttcttgaactggttcgacgatagaacatg 230
>gb|BC023558.2| Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2, mRNA (cDNA clone MGC:19496 IMAGE:4137728), complete cds Length = 2143 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1677 tcgccctcctcctcctcggcctcctcgcct 1648
>gb|AY358921.1| Homo sapiens clone DNA39984 SPOCK2 (UNQ269) mRNA, complete cds Length = 1899 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1436 tcgccctcctcctcctcggcctcctcgcct 1407
>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence Length = 485192 Score = 44.1 bits (22), Expect = 0.33 Identities = 31/34 (91%) Strand = Plus / Plus Query: 357 acgagttttggaactggttcgacgatcgaacatg 390 ||||||| | |||||||||||||||| ||||||| Sbjct: 22456 acgagttcttgaactggttcgacgatagaacatg 22489
>emb|AJ001453.1|HSAJ1453 Homo sapiens mRNA for testican-2 Length = 1871 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1524 tcgccctcctcctcctcggcctcctcgcct 1495
>gb|AC023698.4| Drosophila melanogaster X BAC RP98-17C9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160023 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 223 cgccctcctcctcatcggcgtcctcg 248 |||||||||| ||||||||||||||| Sbjct: 60047 cgccctcctcgtcatcggcgtcctcg 60022
>gb|AC022392.5| Homo sapiens chromosome 10 clone RP11-150D20, complete sequence Length = 196467 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 81015 tcgccctcctcctcctcggcctcctcgcct 81044
>dbj|AB041957.1| TT virus DNA, complete genome, isolate:Pt-TTV6 Length = 3690 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 ctccatcgcggccggcggcggc 184 |||||||||||||||||||||| Sbjct: 653 ctccatcgcggccggcggcggc 632
>ref|NM_132150.1| Drosophila melanogaster CG12541-RA (CG12541), mRNA Length = 672 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 223 cgccctcctcctcatcggcgtcctcg 248 |||||||||| ||||||||||||||| Sbjct: 137 cgccctcctcgtcatcggcgtcctcg 162
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 gccggcggcggccggctccgga 194 |||||||||||||||||||||| Sbjct: 12010938 gccggcggcggccggctccgga 12010959
>ref|NM_201458.1| Danio rerio integral membrane protein 1 (itm1), mRNA Length = 2608 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 283 cgagagcgtgatccacgagttcgatccctacttcaactaccg 324 ||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct: 232 cgagagcgtcatccacgagtttgatccgtatttcaattaccg 273
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 gccggcggcggccggctccgga 194 |||||||||||||||||||||| Sbjct: 115418 gccggcggcggccggctccgga 115439
>dbj|D87465.1| Homo sapiens mRNA for KIAA0275 gene, partial cds Length = 5316 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 222 tcgccctcctcctcatcggcgtcctcgcct 251 |||||||||||||| ||||| ||||||||| Sbjct: 1554 tcgccctcctcctcctcggcctcctcgcct 1525
>ref|XM_312559.2| Anopheles gambiae str. PEST ENSANGP00000014815 (ENSANGG00000012326), partial mRNA Length = 2892 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 283 cgagagcgtgatccacgagttcgatccctacttcaactaccg 324 ||||||| | ||||||||||||||||| | ||||||||||| Sbjct: 129 cgagagcatcatccacgagttcgatccatggttcaactaccg 170
>gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 of 74 of the complete sequence Length = 331952 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 223 cgccctcctcctcatcggcgtcctcg 248 |||||||||| ||||||||||||||| Sbjct: 193709 cgccctcctcgtcatcggcgtcctcg 193684
>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete sequence Length = 211056 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 181 cggccggctccggaacgccctgggcg 206 ||||||||||||| |||||||||||| Sbjct: 110729 cggccggctccgggacgccctgggcg 110704
>gb|AF532601.1| Triticum aestivum multidrug resistance associated protein MRP2 mRNA, complete cds Length = 4857 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 cctcatcggcgtcctcgccttctcc 256 |||| |||||||||||||||||||| Sbjct: 912 cctcctcggcgtcctcgccttctcc 936
>emb|AL590639.9| Human DNA sequence from clone RP11-496H15 on chromosome 1 Contains the 3' end of the gene for retinoid binding protein 7 (CRBPIV), the 5' end of the UBE4B gene for ubiquitination factor E4B (UFD2 homolog, yeast), a pseudogene similar to part of ribosomal protein L21 (RPL21) and a pseudogene similar to part of phosphoglycerate mutase, complete sequence Length = 96075 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 tctgccccccaaccccagagctctg 131 ||||||||||| ||||||||||||| Sbjct: 17342 tctgccccccacccccagagctctg 17318
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 gcggcggccggctccggaacg 197 ||||||||||||||||||||| Sbjct: 208607 gcggcggccggctccggaacg 208627
>ref|XM_467026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3149 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggcggcggccggctccggaa 195 |||||||||||||||||||| Sbjct: 199 ggcggcggccggctccggaa 180
>ref|NM_192130.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 33 cctcctcctcatcggcgtcc 52
>ref|XM_473091.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1680 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 415 ggcccgctccaccgcggccggcggcggc 442
>gb|AC102490.7| Mus musculus chromosome 1, clone RP24-512M8, complete sequence Length = 133883 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ccccccaaccccagagctct 130 |||||||||||||||||||| Sbjct: 131559 ccccccaaccccagagctct 131540
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 530114 tgatccacgagttcgacccgtggttcaactaccgcg 530149 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 519016 tgatccacgagttcgacccgtggttcaactaccgcg 519051 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 513910 tgatccacgagttcgacccgtggttcaactaccgcg 513945
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ccggctccatcgcggccggc 178 |||||||||||||||||||| Sbjct: 2178051 ccggctccatcgcggccggc 2178032
>ref|XM_867134.1| PREDICTED: Bos taurus similar to protein phosphatase 1, regulatory (inhibitor) subunit 14A (LOC615348), mRNA Length = 742 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 ggcggcgcgctgtgcgctttcgcc 226 |||| ||||||||||||||||||| Sbjct: 189 ggcgccgcgctgtgcgctttcgcc 166
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcctcgc 249 |||||||||| ||||||||||||| Sbjct: 60019 cctcctcctcctcggcgtcctcgc 60042
>gb|AC149133.1| Pan troglodytes chromosome X clone RP43-010O16 map human ortholog p11.23 complete sequence Length = 179327 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ccccaaccccagagctctgc 132 |||||||||||||||||||| Sbjct: 148958 ccccaaccccagagctctgc 148977
>ref|XM_838127.1| Leishmania major strain Friedlin oligosaccharyl transferase-like protein (LMJ_1044) partial mRNA Length = 2559 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 278 tgatccacgagttcgacccgtggttcaactaccgcg 313
>ref|XM_838128.1| Leishmania major strain Friedlin oligosaccharyl transferase-like protein (LMJ_1045) partial mRNA Length = 2322 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 86 tgatccacgagttcgacccgtggttcaactaccgcg 121
>ref|XM_838130.1| Leishmania major strain Friedlin oligosaccharyl transferase subunit (LMJ_1047) partial mRNA Length = 2574 Score = 40.1 bits (20), Expect = 5.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 291 tgatccacgagttcgatccctacttcaactaccgcg 326 |||||||||||||||| || | ||||||||||||| Sbjct: 296 tgatccacgagttcgacccgtggttcaactaccgcg 331
>emb|CR688227.2|CNS0FTZJ Tetraodon nigroviridis full-length cDNA Length = 1135 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 241 cgtcctcgccttctccatccgcctcttc 268 ||||||| |||||||||||| ||||||| Sbjct: 525 cgtcctctccttctccatcctcctcttc 498
>gb|AC105280.3| Homo sapiens chromosome 1 clone RP5-1199C23, complete sequence Length = 70624 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ccccaaccccagagctctgc 132 |||||||||||||||||||| Sbjct: 7111 ccccaaccccagagctctgc 7092
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 90882 ggcccgctccaccgcggccggcggcggc 90855
>gb|AC157503.3| Medicago truncatula chromosome 2 BAC clone mte1-58k20, complete sequence Length = 115769 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 cctcgccttctccatccgcctctt 267 ||||||||||||||||| |||||| Sbjct: 63866 cctcgccttctccatcctcctctt 63889
>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence Length = 192946 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccccccaaccccagagctct 130 |||||||||||||||||||| Sbjct: 190199 ccccccaaccccagagctct 190218
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggcggcggccggctccggaa 195 |||||||||||||||||||| Sbjct: 25997158 ggcggcggccggctccggaa 25997177
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 28506386 cctcctcctcatcggcgtcc 28506405 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 28489337 cctcctcctcatcggcgtcc 28489318
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcggcggccggctccggaacgccc 200 ||||||||||||||||| |||||| Sbjct: 4069586 gcggcggccggctccggtacgccc 4069609
>ref|XM_221050.3| PREDICTED: Rattus norvegicus fetal Alzheimer antigen (predicted) (Falz_predicted), mRNA Length = 11352 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 cctcctcctcatcggcgtcctcgc 249 |||||||||||||| ||||||||| Sbjct: 1855 cctcctcctcatcgtcgtcctcgc 1832
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ggccggctccatcgcggccggcggcggc 184 ||||| ||||| |||||||||||||||| Sbjct: 660300 ggccgcctccagcgcggccggcggcggc 660273
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 32825 cctcctcctcatcggcgtcc 32844 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 15776 cctcctcctcatcggcgtcc 15757
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggcggcggccggctccggaa 195 |||||||||||||||||||| Sbjct: 4604 ggcggcggccggctccggaa 4623
>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030D07 Length = 133321 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggcggcggccggctccggaa 195 |||||||||||||||||||| Sbjct: 61031 ggcggcggccggctccggaa 61050
>dbj|AK121493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000K17, full insert sequence Length = 1865 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 1169 ggcccgctccaccgcggccggcggcggc 1142
>dbj|AK102164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086H03, full insert sequence Length = 2351 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 50 cctcctcctcatcggcgtcc 69
>dbj|AK100979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144I23, full insert sequence Length = 3297 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggcggcggccggctccggaa 195 |||||||||||||||||||| Sbjct: 199 ggcggcggccggctccggaa 180
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cgcggccggcggcggccggc 188 |||||||||||||||||||| Sbjct: 1514876 cgcggccggcggcggccggc 1514895
>dbj|AK064656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G02, full insert sequence Length = 1066 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cctcctcctcatcggcgtcc 245 |||||||||||||||||||| Sbjct: 97 cctcctcctcatcggcgtcc 116
>dbj|AK063930.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D02, full insert sequence Length = 2109 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 559 ggcccgctccaccgcggccggcggcggc 586
>dbj|AK063370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E02, full insert sequence Length = 2062 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 ggccggctccatcgcggccggcggcggc 184 |||| |||||| |||||||||||||||| Sbjct: 1373 ggcccgctccaccgcggccggcggcggc 1346
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 atcgcggccggcggcggccg 186 |||||||||||||||||||| Sbjct: 2810781 atcgcggccggcggcggccg 2810800
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccatcgcggccggcggcggc 184 |||||||||||||||||||| Sbjct: 3543701 ccatcgcggccggcggcggc 3543682 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,757,482 Number of Sequences: 3902068 Number of extensions: 2757482 Number of successful extensions: 69527 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67836 Number of HSP's gapped (non-prelim): 1685 length of query: 390 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 368 effective length of database: 17,147,199,772 effective search space: 6310169516096 effective search space used: 6310169516096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)