Clone Name | bastl41g04 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 264 bits (133), Expect = 9e-68 Identities = 173/181 (95%), Gaps = 4/181 (2%) Strand = Plus / Plus Query: 1 acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60 |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 4 acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc 60 Query: 61 gaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccca 120 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 61 -aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccca 119 Query: 121 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgc 179 Query: 181 c 181 | Sbjct: 180 c 180
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 102 cggcgccaccgtca 115
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 30023361 cggcgccaccgtca 30023374 Score = 77.8 bits (39), Expect = 1e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 182 accgtca 188 ||||||| Sbjct: 27798817 accgtca 27798823 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 199 cggcgccaccgtca 212
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Minus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 84390 cggcgccaccgtca 84377
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 30114783 cggcgccaccgtca 30114796 Score = 77.8 bits (39), Expect = 1e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 182 accgtca 188 ||||||| Sbjct: 27890141 accgtca 27890147 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 115 bits (58), Expect = 5e-23 Identities = 70/74 (94%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 175 cggcgccaccgtca 188 |||||||||||||| Sbjct: 217 cggcgccaccgtca 230
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 77.8 bits (39), Expect = 1e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 182 accgtca 188 ||||||| Sbjct: 112 accgtca 118
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 77.8 bits (39), Expect = 1e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 182 accgtca 188 ||||||| Sbjct: 42947 accgtca 42953
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 77.8 bits (39), Expect = 1e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 182 accgtca 188 ||||||| Sbjct: 15076 accgtca 15070
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 75.8 bits (38), Expect = 4e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 182 accgtc 187 |||||| Sbjct: 260 accgtc 265
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 75.8 bits (38), Expect = 4e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 182 accgtc 187 |||||| Sbjct: 112 accgtc 117
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 75.8 bits (38), Expect = 4e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 182 accgtc 187 |||||| Sbjct: 174 accgtc 179
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 69.9 bits (35), Expect = 3e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 182 acc 184 ||| Sbjct: 3626 acc 3628
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 69.9 bits (35), Expect = 3e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 182 acc 184 ||| Sbjct: 183 acc 185
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 67.9 bits (34), Expect = 1e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 146 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtc 187 ||||||||||| |||||| ||||||||||||||||||||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtc 42
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.15 Identities = 25/26 (96%) Strand = Plus / Plus Query: 154 cgcgctcgacttcaacgacttcggcg 179 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tgcgcaagaacgcgctcgacttca 167 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756
>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence Length = 187392 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 cctgacggggggcctccgg 112 ||||||||||||||||||| Sbjct: 106900 cctgacggggggcctccgg 106882
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtga 89 ||||||||||||||||||| Sbjct: 3161120 ggcgtcggcggcatcgtga 3161102
>ref|XM_369540.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG05924.4) partial mRNA Length = 1686 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 cgtcggcggcatcgtgagc 91 ||||||||||||||||||| Sbjct: 1401 cgtcggcggcatcgtgagc 1419
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 caagggctccgtcgtcctc 142 ||||||||||||||||||| Sbjct: 3701605 caagggctccgtcgtcctc 3701623
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 163 cttcaacgacttcggcgcc 181 ||||||||||||||||||| Sbjct: 2718280 cttcaacgacttcggcgcc 2718298
>ref|XM_391393.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG11217.1) partial mRNA Length = 1107 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 caagggctccgtcgtcctc 142 ||||||||||||||||||| Sbjct: 30 caagggctccgtcgtcctc 48
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggcggcatcgtgagcgacc 95 ||||||||||||||||||| Sbjct: 116763 ggcggcatcgtgagcgacc 116745
>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21, complete sequence Length = 168569 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagcg 19 ||||||||||||||||||| Sbjct: 55970 acacagcagcaccacagcg 55952
>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21, complete sequence Length = 179432 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagcg 19 ||||||||||||||||||| Sbjct: 95885 acacagcagcaccacagcg 95867
>gb|AF375824.1|AF375824 Chlamydomonas reinhardtii mating type protein Mat3p (mat3) gene, complete cds Length = 7056 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 169 cgacttcggcgccaccgtc 187 ||||||||||||||||||| Sbjct: 4151 cgacttcggcgccaccgtc 4169
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 136 cgtcctcatgcgcaagaacgcgc 158 ||||||||||| ||||||||||| Sbjct: 859782 cgtcctcatgctcaagaacgcgc 859760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 917,779 Number of Sequences: 3902068 Number of extensions: 917779 Number of successful extensions: 65186 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64174 Number of HSP's gapped (non-prelim): 1009 length of query: 188 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 166 effective length of database: 17,147,199,772 effective search space: 2846435162152 effective search space used: 2846435162152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)