ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOAC_RHOCA (Q9X5W6) Molybdenum cofactor biosynthesis protein C (... 28 8.2
2HELS_HALSA (Q9HMV6) Putative ski2-type helicase (EC 3.6.1.-) 28 8.2
3ACL3_AGKAC (P60244) Acutolysin-C (EC 3.4.24.-) (Hemorrhagin III) 28 8.2

>MOAC_RHOCA (Q9X5W6) Molybdenum cofactor biosynthesis protein C (Fragment)|
          Length = 77

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 33  KQGKGNDVGVALVKTLQNTKYSLDEKLDQSFINFFGRRPAAQS 161
           + GKG+ +G+A V  +   K + D K  +SF      RP A S
Sbjct: 34  RAGKGDVLGIARVAGIMAAKRTADPKNSKSFSRVLLERPRAHS 76



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>HELS_HALSA (Q9HMV6) Putative ski2-type helicase (EC 3.6.1.-)|
          Length = 783

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = +3

Query: 12  DDNNASKKQGKGNDVGVALVKTLQNTKYSLDEKLDQSFINFFGRRPAAQSEDSDMTGNAI 191
           D   A    G G+     +  TL +   +L       F+N      A+    +D+TGNA+
Sbjct: 229 DGTQAELSVGSGSQTAAVVADTLADDGSTL------VFVNSRRNAEASARRLADVTGNAL 282

Query: 192 SSRQNDQGDANILAQVGGNS 251
           SS + ++  A+I A++ G S
Sbjct: 283 SSAERER-LADIAAEIRGVS 301



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>ACL3_AGKAC (P60244) Acutolysin-C (EC 3.4.24.-) (Hemorrhagin III)|
          Length = 197

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 45  GNDVGVALVKTLQNTKYSLDEKLDQSFI 128
           GN VG+A +KT+ N+KYS+    D S I
Sbjct: 104 GNTVGLAYLKTMCNSKYSVGLIQDHSAI 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,865,557
Number of Sequences: 219361
Number of extensions: 856658
Number of successful extensions: 2172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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