>TID_DROME (Q27237) Protein tumorous imaginal discs, mitochondrial precursor|
           (Protein lethal(2)tumorous imaginal discs) (TID56)
           (TID50)
          Length = 520

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 345 RCSSGRTE*RGQGAAGRAESCSGASRVGEAAPGDGVEDHRWALEW--RWLRPAVRGGGFA 172
           + ++G +E  G GAA +A + +  S  G + PG G E+     +W       A  GGG  
Sbjct: 443 QATAGASEEPGAGAAAKASAAAAGS--GASKPGPGAEESEGKDQWTDNKKTKAKEGGGSG 500

Query: 171 VGIG 160
            G G
Sbjct: 501 SGQG 504

>CT085_HUMAN (Q9H1P6) Protein C20orf85|
          Length = 137

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   CNHLSPTPHPPSQIPRLCRTRPLPPAEAN*SIYP 104
           C    PTP P  ++P   R RP+ P E    ++P
Sbjct: 54  CEEDLPTPKPKIELPERFRIRPVTPVEKYIKVFP 87

>FIXZ_RHILE (P07748) Nitrogen fixation protein fixZ|
          Length = 359

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = -1

Query: 390 LNCSNHNRRLPC----CGGRCSSGRTE*RGQGAAGRAESCSGASRVGEAAPGDGVEDHR 226
           + C+  NR+  C    C GR S   +       A R +  +GA R   A PGD   D R
Sbjct: 34  IQCNYCNRKYDCTNESCPGRISKANSRPGTTQGACRRQQSAGAFRNRVAGPGDACYDWR 92

>STRC_MOUSE (Q8VIM6) Stereocilin precursor|
          Length = 1809

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 3   CNHLSP-TPHPPSQIPRLCRTRPLPP 77
           C H+ P TP PP   PR   T P PP
Sbjct: 371 CQHIKPATPRPPPTTPRPPPTTPQPP 396

>CBLB_MOUSE (Q3TTA7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b)
          Length = 982

 Score = 24.6 bits (52), Expect(2) = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 281 EQDSARPAAPCPLHSVRPELHRPP 352
           +QD   PA P PL    P   RPP
Sbjct: 539 KQDKPLPAPPPPLRDPPPPPERPP 562



 Score = 22.7 bits (47), Expect(2) = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 RPEPPPLECPSMVLHTVP 249
           +P+P PL+ P + L  VP
Sbjct: 491 KPQPDPLQIPHLSLPPVP 508

>CBLB_RAT (Q8K4S7) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
           (Casitas B-lineage lymphoma proto-oncogene b)
          Length = 938

 Score = 24.6 bits (52), Expect(2) = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 281 EQDSARPAAPCPLHSVRPELHRPP 352
           +QD   PA P PL    P   RPP
Sbjct: 539 KQDKPLPAPPPPLRDPPPPPERPP 562



 Score = 22.7 bits (47), Expect(2) = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 RPEPPPLECPSMVLHTVP 249
           +P+P PL+ P + L  VP
Sbjct: 491 KPQPDPLQIPHLSLPPVP 508

>KR171_HUMAN (Q9BYP8) Keratin-associated protein 17-1 (Keratin associated|
           protein 16.1)
          Length = 105

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 357 CCGGRCSSGRTE*RGQGAAGRAESCSGASRVGEAAPGDG 241
           CCG  C  G +   G G +G   SC G+S  G    G G
Sbjct: 31  CCGSCCGCGGS---GCGGSGCGGSCCGSSCCGSGCGGCG 66

>E3GL_ADEM1 (P19720) Early E3 17.7 kDa glycoprotein|
          Length = 161

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 128 AELIWWSCRRSPIPTAKPPP 187
           AE+I+  CRR+  PTA PPP
Sbjct: 124 AEVIYNRCRRTTRPTAPPPP 143

>FZD8_MOUSE (Q61091) Frizzled 8 precursor (Frizzled-8) (Fz-8) (mFz8)|
          Length = 685

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = -1

Query: 360 PCCGGRCSSGRTE*RGQGAAGRAESCSGASRVGEAAPGDGVEDH 229
           P  GGR  +G     G GAAGR  S  GA   GE      VE H
Sbjct: 342 PGAGGRGGAGGAAAAGAGAAGRGASSPGAR--GEYEELGAVEQH 383

>PCDH8_HUMAN (O95206) Protocadherin-8 precursor (Arcadlin)|
          Length = 1070

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 18   PTPHPPSQIPRLCRTRPLP 74
            P+PHPP+Q+   C++  LP
Sbjct: 976  PSPHPPAQMSTFCKSTSLP 994

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle|
            attachment abnormal protein 3)
          Length = 3767

 Score = 25.8 bits (55), Expect(2) = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 21   TPHPPSQIPRLCRTRPLPP 77
            +PH  S   RLC+ RP PP
Sbjct: 2050 SPHRASHPGRLCQPRPTPP 2068



 Score = 21.2 bits (43), Expect(2) = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 196  RPEPPPLEC 222
            RP PPP EC
Sbjct: 2064 RPTPPPPEC 2072

>ABL1_CAEEL (P03949) Tyrosine-protein kinase abl-1 (EC 2.7.10.2)|
          Length = 1224

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -3

Query: 202 PAGCA----RRRLRCWDWAPPTRP 143
           P GC     R  L+CW+W+P  RP
Sbjct: 530 PQGCPPSVYRLMLQCWNWSPSDRP 553

>SGF3_BOMMO (Q17237) Silk gland factor 3 (SGF-3) (POU domain protein M1)|
          Length = 351

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 167 PTAKPPPRTAGRSHLHSSAHRWXXXXXXXXXXXXLLAPEQDSARPA 304
           P  KPPP      HL  +AH W            +++P   +ARP+
Sbjct: 76  PDVKPPPAPHDHRHLQHAAHGW---------HAPVVSPHYGAARPS 112

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 146 SCRRSPIPTAKPPPRTAGRSHLHSSA 223
           S   SP P   PPPR A RS  HS A
Sbjct: 716 SAAASPPPGDPPPPRRARRSQRHSDA 741

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
 Frame = -1

Query: 348  GRCSSGRTE*RGQGAAG-----RAESCSGASRVGEAAPGDGVEDHRWALEWRWLRPAVRG 184
            G C  GR      GAAG     R E C G      A PG G ED    L      P    
Sbjct: 1663 GGCGGGRAP----GAAGGPGLCRCECCRGRRPGPGAGPGPGPEDEVTVLGALMESPTGGP 1718

Query: 183  GGFAVGIGLL 154
            GG   G+ LL
Sbjct: 1719 GGRGPGLVLL 1728


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,022,645
Number of Sequences: 219361
Number of extensions: 1251161
Number of successful extensions: 4577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)