Clone Name | bastl41f07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PRIA_LENED (Q01200) Protein priA precursor | 30 | 1.5 | 2 | IF2_COREF (Q8FPA7) Translation initiation factor IF-2 | 29 | 2.5 | 3 | NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) | 28 | 5.6 | 4 | ZN516_HUMAN (Q92618) Zinc finger protein 516 | 28 | 7.4 | 5 | SSF1_HUMAN (Q9NQ55) Suppressor of SWI4 1 homolog (Ssf-1) (Peter ... | 28 | 7.4 | 6 | YKA7_CAEEL (P34258) Hypothetical protein B0303.7 | 27 | 9.6 | 7 | EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin micr... | 27 | 9.6 | 8 | DEND_HUMAN (O94850) Dendrin | 27 | 9.6 |
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>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 5 PSSTPIPHPNXXXXXXXXTKPAIPPTSAP 91 P+STP P P+ T P+ PTS P Sbjct: 97 PTSTPTPTPSSAHHTSTHTSPSSTPTSTP 125
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = -2 Query: 238 APRLGRGPRRSVHADMP-PRPGGGGWR 161 APR+ P + AD P PRPGGGG R Sbjct: 183 APRVANNPFSTGAADRPGPRPGGGGPR 209
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +2 Query: 5 PSSTPIPHPNXXXXXXXXTKPAIPPTSAPS 94 P STPIPHP P++ + +PS Sbjct: 179 PRSTPIPHPRKRSPASPSPSPSLSKSPSPS 208
>ZN516_HUMAN (Q92618) Zinc finger protein 516| Length = 1163 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = -2 Query: 283 TRRCYGSPPRWLLVLAPRLGRGPRRSVHADMPPRPGGGGWRES 155 T+ C+G P P PR+ + P PGGGG+ S Sbjct: 888 TKPCHGQEPHGAATQGPLAK--PRQEASSKPVPAPGGGGFSRS 928
>SSF1_HUMAN (Q9NQ55) Suppressor of SWI4 1 homolog (Ssf-1) (Peter Pan homolog)| Length = 473 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +1 Query: 187 AACRREPSGAARDQGEGRG 243 A RR P GA+RD G GRG Sbjct: 446 AQARRGPRGASRDGGRGRG 464
>YKA7_CAEEL (P34258) Hypothetical protein B0303.7| Length = 493 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = +3 Query: 156 DSLHPPPPGRGGMSXXXXXXXXXXXXXXXXKSHRGG 263 DS+ PPPP RGG S H GG Sbjct: 108 DSVPPPPPHRGGTSPGKLSGSHSAIRSQLENMHIGG 143
>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril| interface-located protein 5) (Elastin microfibril interfacer 5) Length = 766 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -1 Query: 245 GPRPSPWSRAAPLGSRRHAAATGRGRMEGVEG 150 GPRP +SRAAP R R+E +EG Sbjct: 157 GPRPPSYSRAAPSPHGRKGPGLFGERLERLEG 188
>DEND_HUMAN (O94850) Dendrin| Length = 657 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 217 PRRSVHADMPPRPGGGGWRES 155 PR S P PGG GWRES Sbjct: 341 PRHSQTLPRPWAPGGTGWRES 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,306,557 Number of Sequences: 219361 Number of extensions: 428385 Number of successful extensions: 1605 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1603 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)