ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRIA_LENED (Q01200) Protein priA precursor 30 1.5
2IF2_COREF (Q8FPA7) Translation initiation factor IF-2 29 2.5
3NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) 28 5.6
4ZN516_HUMAN (Q92618) Zinc finger protein 516 28 7.4
5SSF1_HUMAN (Q9NQ55) Suppressor of SWI4 1 homolog (Ssf-1) (Peter ... 28 7.4
6YKA7_CAEEL (P34258) Hypothetical protein B0303.7 27 9.6
7EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin micr... 27 9.6
8DEND_HUMAN (O94850) Dendrin 27 9.6

>PRIA_LENED (Q01200) Protein priA precursor|
          Length = 258

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 5   PSSTPIPHPNXXXXXXXXTKPAIPPTSAP 91
           P+STP P P+        T P+  PTS P
Sbjct: 97  PTSTPTPTPSSAHHTSTHTSPSSTPTSTP 125



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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 238 APRLGRGPRRSVHADMP-PRPGGGGWR 161
           APR+   P  +  AD P PRPGGGG R
Sbjct: 183 APRVANNPFSTGAADRPGPRPGGGGPR 209



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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 5   PSSTPIPHPNXXXXXXXXTKPAIPPTSAPS 94
           P STPIPHP           P++  + +PS
Sbjct: 179 PRSTPIPHPRKRSPASPSPSPSLSKSPSPS 208



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>ZN516_HUMAN (Q92618) Zinc finger protein 516|
          Length = 1163

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 283  TRRCYGSPPRWLLVLAPRLGRGPRRSVHADMPPRPGGGGWRES 155
            T+ C+G  P       P     PR+   +   P PGGGG+  S
Sbjct: 888  TKPCHGQEPHGAATQGPLAK--PRQEASSKPVPAPGGGGFSRS 928



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>SSF1_HUMAN (Q9NQ55) Suppressor of SWI4 1 homolog (Ssf-1) (Peter Pan homolog)|
          Length = 473

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 187 AACRREPSGAARDQGEGRG 243
           A  RR P GA+RD G GRG
Sbjct: 446 AQARRGPRGASRDGGRGRG 464



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>YKA7_CAEEL (P34258) Hypothetical protein B0303.7|
          Length = 493

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 156 DSLHPPPPGRGGMSXXXXXXXXXXXXXXXXKSHRGG 263
           DS+ PPPP RGG S                  H GG
Sbjct: 108 DSVPPPPPHRGGTSPGKLSGSHSAIRSQLENMHIGG 143



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>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril|
           interface-located protein 5) (Elastin microfibril
           interfacer 5)
          Length = 766

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 GPRPSPWSRAAPLGSRRHAAATGRGRMEGVEG 150
           GPRP  +SRAAP    R        R+E +EG
Sbjct: 157 GPRPPSYSRAAPSPHGRKGPGLFGERLERLEG 188



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>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 217 PRRSVHADMPPRPGGGGWRES 155
           PR S     P  PGG GWRES
Sbjct: 341 PRHSQTLPRPWAPGGTGWRES 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,306,557
Number of Sequences: 219361
Number of extensions: 428385
Number of successful extensions: 1605
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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