Clone Name | bastl41f07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ccgccggccggcgcatccacc 113 ||||||||||||||||||||| Sbjct: 2334997 ccgccggccggcgcatccacc 2335017
>ref|XM_343986.2| PREDICTED: Rattus norvegicus signal recognition particle (predicted) (Srp68_predicted), mRNA Length = 2520 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ccacctccgctccctccgccg 98 ||||||||||||||||||||| Sbjct: 197 ccacctccgctccctccgccg 177
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ccgccggccggcgcatccacc 113 ||||||||||||||||||||| Sbjct: 56798 ccgccggccggcgcatccacc 56818
>dbj|AB056788.1| Macaca fascicularis brain cDNA clone:QnpA-14496, full insert sequence Length = 2002 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ccctcctccactcctatcccccatc 29 |||||||||| |||||||||||||| Sbjct: 1280 ccctcctccattcctatcccccatc 1256
>ref|XM_512987.1| PREDICTED: Pan troglodytes similar to mitogen-activated protein kinase kinase 2; mitogen-activated protein kinase kinase 2, p45; MAP kinase kinase 2; MAPK/ERK kinase 2; dual specificity mitogen-activated protein kinase kinase 2; ERK activator kinase 2 (LOC456390), mRNA Length = 1105 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 890 ggcgcctccacccaccctcctgcc 913
>gb|AC163748.6| Mus musculus BAC clone RP23-411N10 from chromosome 9, complete sequence Length = 226254 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gactccctccatcctccccc 175 |||||||||||||||||||| Sbjct: 40262 gactccctccatcctccccc 40243
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 accgcggcggcgagccgtagcacc 276 ||||||||||||||||| |||||| Sbjct: 1080233 accgcggcggcgagccgcagcacc 1080210
>ref|NM_030662.2| Homo sapiens mitogen-activated protein kinase kinase 2 (MAP2K2), mRNA Length = 1759 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1540 ggcgcctccacccaccctcctgcc 1563
>gb|BC000471.2| Homo sapiens mitogen-activated protein kinase kinase 2, mRNA (cDNA clone MGC:8600 IMAGE:2961198), complete cds Length = 1759 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1540 ggcgcctccacccaccctcctgcc 1563
>gb|AC166939.2| Mus musculus BAC clone RP23-72K19 from chromosome 8, complete sequence Length = 236510 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctccctccatcctccccctc 177 |||||||||||||||||||| Sbjct: 40631 ctccctccatcctccccctc 40650
>gb|AC127568.4| Mus musculus BAC clone RP24-215P13 from chromosome 10, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gactccctccatcctccccc 175 |||||||||||||||||||| Sbjct: 120532 gactccctccatcctccccc 120513
>emb|AL118516.10|HSBK29F11 Human DNA sequence from clone CTA-29F11 on chromosome 22, complete sequence Length = 89319 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 cccacccacctccgctccctccgc 96 |||| ||||||||||||||||||| Sbjct: 43578 cccaaccacctccgctccctccgc 43601
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 accgcggcggcgagccgtagcacc 276 ||||||||||||||||| |||||| Sbjct: 46433 accgcggcggcgagccgcagcacc 46410
>gb|BC067760.1| Homo sapiens mitogen-activated protein kinase kinase 2 pseudogene, mRNA (cDNA clone MGC:87051 IMAGE:5296643), complete cds Length = 1696 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1486 ggcgcctccacccaccctcctgcc 1509
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 accgcggcggcgagccgtagcacc 276 ||||||||||||||||| |||||| Sbjct: 93659 accgcggcggcgagccgcagcacc 93636
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ccaccgcggcggcgagccgt 270 |||||||||||||||||||| Sbjct: 28521 ccaccgcggcggcgagccgt 28540
>emb|CR615045.1| full-length cDNA clone CS0DC007YC05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1562 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1394 ggcgcctccacccaccctcctgcc 1417
>dbj|AK126446.1| Homo sapiens cDNA FLJ44482 fis, clone UTERU2033172, moderately similar to DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 Length = 2925 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 2734 ggcgcctccacccaccctcctgcc 2757
>emb|CR617539.1| full-length cDNA clone CS0DC011YE15 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1440 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1304 ggcgcctccacccaccctcctgcc 1327
>emb|CR613972.1| full-length cDNA clone CS0DI009YA14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 658 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 cccacccacctccgctccctccgc 96 |||| ||||||||||||||||||| Sbjct: 68 cccaaccacctccgctccctccgc 45
>emb|CR609681.1| full-length cDNA clone CS0DC012YD19 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1614 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1462 ggcgcctccacccaccctcctgcc 1485
>dbj|AK093125.1| Homo sapiens cDNA FLJ35806 fis, clone TESTI2005987, highly similar to DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 (EC 2.7.1.-) Length = 1778 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1587 ggcgcctccacccaccctcctgcc 1610
>dbj|AB220535.1| Macaca fascicularis mRNA, clone QorA-12287: similar to Homo sapiens mitogen-activated protein kinase kinase 2 (MAP2K2), mRNA, NM_030662.2 Length = 1282 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1074 ggcgcctccacccaccctcctgcc 1097
>gb|AC090627.4| Homo sapiens chromosome 17, clone CTD-2365J3, complete sequence Length = 136843 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 tcccctcctccactcctatccccc 26 ||||||| |||||||||||||||| Sbjct: 49981 tcccctcttccactcctatccccc 49958
>gb|AF294730.1|AF294730 Microbacterium sp. AL-210 levan fructotransferase (lftM) gene, complete cds Length = 1890 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccacccaccctcctgccgct 128 |||||||||||||||||||| Sbjct: 1275 ccacccaccctcctgccgct 1256
>ref|NR_002144.1| Homo sapiens mitogen-activated protein kinase kinase 2 pseudogene (LOC407835) on chromosome 7 Length = 1737 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1530 ggcgcctccacccaccctcctgcc 1553
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 cccacctccgctccctccgc 96 |||||||||||||||||||| Sbjct: 10726180 cccacctccgctccctccgc 10726199
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ccaccgcggcggcgagccgt 270 |||||||||||||||||||| Sbjct: 1132937 ccaccgcggcggcgagccgt 1132918
>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence Length = 217615 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 53529 ggcgcctccacccaccctcctgcc 53552
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 cccacctccgctccctccgc 96 |||||||||||||||||||| Sbjct: 48994 cccacctccgctccctccgc 49013
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gccaccgcggcggcgagccg 269 |||||||||||||||||||| Sbjct: 2522315 gccaccgcggcggcgagccg 2522296
>gb|AC018639.8|AC018639 Human Chromosome 7 clone RP11-128A6, complete sequence Length = 157579 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 144079 ggcgcctccacccaccctcctgcc 144102
>dbj|AK129586.1| Homo sapiens cDNA FLJ26075 fis, clone RCT02312 Length = 1171 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 980 ggcgcctccacccaccctcctgcc 1003
>emb|Z79864.1|HS302F12 H.sapiens chromosome 22 CpG island DNA genomic Mse1 fragment, clone 302f12, complete read Length = 453 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 cccacccacctccgctccctccgc 96 |||| ||||||||||||||||||| Sbjct: 58 cccaaccacctccgctccctccgc 35
>emb|Z79832.1|HS301F5 H.sapiens chromosome 22 CpG island DNA genomic Mse1 fragment, clone 301f5, complete read Length = 453 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 cccacccacctccgctccctccgc 96 |||| ||||||||||||||||||| Sbjct: 59 cccaaccacctccgctccctccgc 36
>gb|BC018645.2| Homo sapiens mitogen-activated protein kinase kinase 2, mRNA (cDNA clone MGC:16530 IMAGE:4025987), complete cds Length = 1692 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1482 ggcgcctccacccaccctcctgcc 1505
>emb|BX538081.1|HSM806261 Homo sapiens mRNA; cDNA DKFZp686L02273 (from clone DKFZp686L02273); complete cds Length = 1500 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1290 ggcgcctccacccaccctcctgcc 1313
>gb|AC132372.4| Mus musculus BAC clone RP23-478B10 from 8, complete sequence Length = 178694 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ctccctccatcctccccctc 177 |||||||||||||||||||| Sbjct: 29913 ctccctccatcctccccctc 29894
>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete sequence Length = 174638 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ccactcctatcccccatccc 31 |||||||||||||||||||| Sbjct: 21911 ccactcctatcccccatccc 21930
>gb|L11285.1|HUMMEK2NF Homosapiens ERK activator kinase (MEK2) mRNA Length = 1576 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 1369 ggcgcctccacccaccctcctgcc 1392
>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 ggcgcatccacccaccctcctgcc 125 ||||| |||||||||||||||||| Sbjct: 115552 ggcgcctccacccaccctcctgcc 115529 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,511,617 Number of Sequences: 3902068 Number of extensions: 2511617 Number of successful extensions: 53679 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53051 Number of HSP's gapped (non-prelim): 628 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)