ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone recep... 29 3.2
2Y1899_MYCTU (O07733) UPF0189 protein Rv1899c/MT1950 28 5.5
3MAOC_ORYSA (P43279) NADP-dependent malic enzyme, chloroplast pre... 27 9.4
4PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B me... 27 9.4
5IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Ir... 27 9.4
6IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Ir... 27 9.4
7MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW an... 27 9.4
8PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B me... 27 9.4

>ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone receptor)|
          Length = 907

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 314 DDETQPGEGRAASRGRLVPACLPAHVAVSRT 222
           D+E QP + R+AS+G    AC+P     S T
Sbjct: 96  DEEQQPSQQRSASKGHPESACVPEPGVTSAT 126



to top

>Y1899_MYCTU (O07733) UPF0189 protein Rv1899c/MT1950|
          Length = 359

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
 Frame = -2

Query: 281 ASRGRLVPACLPAHVAVSRTTRRSSVXXXXXXXXXXXXXARASVGAGLA-----RAMPMR 117
           A  G    A  PA+ A+S +T R +              AR +  AG+A       +   
Sbjct: 49  ALAGLTAGARCPAYAAISASTARPAATAGTTPATGASGSARPTDAAGMADLARPGVVATH 108

Query: 116 WARTAGGKGWDGDGICSC 63
             RT G  G    G+C C
Sbjct: 109 AVRTLGTTGSRAIGLCPC 126



to top

>MAOC_ORYSA (P43279) NADP-dependent malic enzyme, chloroplast precursor (EC|
           1.1.1.40) (NADP-ME)
          Length = 638

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 161 RASVGAGLARAMPMRWARTAGGKGWDGDGICSC 63
           RA+  A  A A P+ W R  GG    G G  SC
Sbjct: 5   RAAATAAAAAASPL-WKRGEGGSSGSGSGCTSC 36



to top

>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +2

Query: 5   SVEGTHEVNS---APHARLAAAGSCRSH----RHPIPFRPPCAPIASASH 133
           SV  ++E  S   +P +  A++GSC SH    + P P  PP  P  S+S+
Sbjct: 243 SVGSSYENTSPAFSPLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSY 292



to top

>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2)
          Length = 484

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 79  SPSHPFPPAVRAHRIGIARASPAPTDAR 162
           SP  P P  +    +G +RASPAP  AR
Sbjct: 358 SPCPPCPGPMGGQTLGGSRASPAPAPAR 385



to top

>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 79  SPSHPFPPAVRAHRIGIARASPAPTDAR 162
           SP  P P  +    +G +RASPAP  +R
Sbjct: 356 SPCPPCPGPIAGQALGGSRASPAPAPSR 383



to top

>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1)
            (Atrophin-1-interacting protein A)
          Length = 1455

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 79   SPSHPFPPAVRAHRIGIARASPAPT 153
            SPSHP PP+  +H+I     SP PT
Sbjct: 1266 SPSHPAPPSDPSHQI-----SPGPT 1285



to top

>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1371

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +2

Query: 5   SVEGTHEVNS---APHARLAAAGSCRSH----RHPIPFRPPCAPIASASH 133
           SV  ++E  S   +P +  A++GSC SH    + P P  PP  P  S+S+
Sbjct: 243 SVGSSYENTSPAFSPLSSPASSGSCASHSPSGQEPGPSVPPLVPARSSSY 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,341,813
Number of Sequences: 219361
Number of extensions: 534344
Number of successful extensions: 1992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top