ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41f02 |
|---|---|
| Clone Library Name | barley_pub |
>PHR_THET2 (P61496) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA| photolyase) (Photoreactivating enzyme) Length = 420 Score = 31.2 bits (69), Expect = 0.62 Identities = 27/87 (31%), Positives = 34/87 (39%) Frame = +1 Query: 7 SLNSKTLQARVPSAKMRDEANPVS*LFQPPSDRCPPSPLTAHSPXXXXXXXXXXXXXXXP 186 +L S T R AK++ EA PV P PP A+ P Sbjct: 93 ALTSYTPYGRYRDAKVQ-EALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEAPLP 151 Query: 187 CSPSTLLPGMENGEIEAAEDGLPVPAP 267 +P L G E GEI + GLP+P P Sbjct: 152 -APEALPKGPEEGEIPREDPGLPLPEP 177
>PHR_THET8 (P61497) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA| photolyase) (Photoreactivating enzyme) Length = 420 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/87 (29%), Positives = 32/87 (36%) Frame = +1 Query: 7 SLNSKTLQARVPSAKMRDEANPVS*LFQPPSDRCPPSPLTAHSPXXXXXXXXXXXXXXXP 186 +L S T R ++R EA PV P PP A+ P Sbjct: 93 ALTSHTPYGRYRDGRVR-EALPVPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLP 151 Query: 187 CSPSTLLPGMENGEIEAAEDGLPVPAP 267 P L G E GEI + GLP+P P Sbjct: 152 -PPEALPKGPEEGEIPREDPGLPLPEP 177
>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) (Histone acetyltransferase MOZ2) (Monocytic leukemia zinc finger protein-related factor) (Histone acetyltransferas Length = 2073 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Frame = +1 Query: 91 PPSDRCPPSPLTAHSPXXXXXXXXXXX----XXXXPCSPSTLLPGMENGEIEAAEDGL 252 PPS PP+P++ SP CS +L N +++A DGL Sbjct: 490 PPSSLPPPTPISGQSPSSQKSSTATSSPSPQSSSSQCSVPSLSSLTTNSQLKALFDGL 547
>WFDC1_HUMAN (Q9HC57) WAP four-disulfide core domain protein 1 precursor| (Prostate stromal protein ps20) (ps20 growth inhibitor) Length = 220 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 19 KTLQARVPSAKMRDEANPVS*LFQPPSDRCPPSPLT 126 + L AR+ +EA QP +DRCPP P T Sbjct: 37 RALPARLAEKSRAEEAGAPGGPRQPRADRCPPPPRT 72
>EOMES_HUMAN (O95936) Eomesodermin homolog| Length = 686 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/39 (28%), Positives = 22/39 (56%) Frame = +1 Query: 190 SPSTLLPGMENGEIEAAEDGLPVPAPPNGRRYRPVGSDD 306 +P+ +L + G+ A+ + P PP+GR+ P G ++ Sbjct: 75 APAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEE 113
>AHR_MUSMC (Q8R4S6) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G K TQ F S++ PP + P+ Sbjct: 630 QQLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQ 668
>AHR_MOUSE (P30561) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G K TQ F S++ PP + P+ Sbjct: 630 QQLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQ 668
>AHR_MUSSP (Q8R4S2) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G K TQ F S++ PP + P+ Sbjct: 636 QQLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQ 674
>AHR_MUSSI (Q8R4S4) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G K TQ F S++ PP + P+ Sbjct: 636 QQLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQ 674
>AHR_MUSMM (Q8R4S5) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 883 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G K TQ F S++ PP + P+ Sbjct: 630 QQLCQMVCPQQDLGPKHTQINGTFASWNPTPPVSFNCPQ 668
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/83 (22%), Positives = 30/83 (36%) Frame = +1 Query: 22 TLQARVPSAKMRDEANPVS*LFQPPSDRCPPSPLTAHSPXXXXXXXXXXXXXXXPCSPST 201 ++ A P +++E+ P+S L P P + L P P P Sbjct: 112 SMPAFSPGPGIKEESVPLSILQTPTPQPLPGALLPQSFPAPAPPQFSSTPVLGYPSPPGG 171 Query: 202 LLPGMENGEIEAAEDGLPVPAPP 270 G G + GLP+ +PP Sbjct: 172 FSTGSPPGNTQQPLPGLPLASPP 194
>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty| one protein) (Cyclin D-related protein) (Zinc finger MYND domain-containing protein 2) Length = 604 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +1 Query: 193 PSTLLPGME---NGEIEAAEDGLPVPAPPNGRRYRPVGSDDSAV 315 P T+ PG N + +GLP P PP + YR DD A+ Sbjct: 267 PCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYR---LDDMAI 307
>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)| Length = 577 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +1 Query: 193 PSTLLPGME---NGEIEAAEDGLPVPAPPNGRRYRPVGSDDSAV 315 P T+ PG N + +GLP P PP + YR DD A+ Sbjct: 240 PCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYR---LDDMAI 280
>AHR_MUSCR (Q8R4S7) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +2 Query: 17 QRLCRPGCPAQK*GTKQTQ----FRSFSNPPPTVAHLPR 121 Q+LC+ CP Q G + TQ F S++ PP + P+ Sbjct: 636 QQLCQMECPQQDLGQRHTQINGSFASWNPTPPVSFNCPQ 674
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 211 GMENGEIEAAEDGLPVPAPPNGRRYRPVGSDDSAVIQMTSME 336 G ++GE+ +++ PVPA P P+G D Q+ M+ Sbjct: 1536 GKKSGEVISSDPNTPVPASPAHLLPAPLGLPDKMEAQLGYMD 1577 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,675,550 Number of Sequences: 219361 Number of extensions: 775862 Number of successful extensions: 1861 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1858 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
