ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481609.1| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
3dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
4dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
5dbj|AK108337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
6gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complet... 46 0.087
7emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-1... 46 0.087
8ref|XM_478273.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
9gb|AC099038.2| Drosophila melanogaster clone BACR28A23, complete... 42 1.4
10gb|AC097354.12| Mus musculus strain 129/Sv clone ct7-297f7 map X... 42 1.4
11gb|DQ174261.1| Streptomyces tsusimaensis strain ATCC 15141 putat... 42 1.4
12gb|AY129338.1| Mycobacteriophage Omega, complete sequence 42 1.4
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 ... 42 1.4
16emb|AL672082.15| Mouse DNA sequence from clone RP23-67B21 on chr... 42 1.4
17emb|X69465.1|SSRYRA S.scrofa gene for skeletal muscle ryanodine ... 42 1.4
18gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, com... 40 5.4
19gb|AC128859.4| Rattus norvegicus 10 BAC CH230-436I22 (Children's... 40 5.4
20gb|BC015763.1| Homo sapiens EPS8-like 1, transcript variant 2, m... 40 5.4
21ref|NM_133180.1| Homo sapiens EPS8-like 1 (EPS8L1), transcript v... 40 5.4
22ref|NM_017729.2| Homo sapiens EPS8-like 1 (EPS8L1), transcript v... 40 5.4
23gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome 40 5.4
24ref|NM_001032620.1| Takifugu rubripes translin associated factor... 40 5.4
25gb|AY486480.1|AY486470S11 Human herpesvirus 5 strain Toledo geno... 40 5.4
26gb|AF370395.1| Homo sapiens PP10566 mRNA, complete cds 40 5.4
27emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 ma... 40 5.4
28gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete s... 40 5.4
29gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete seq... 40 5.4
30gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequ... 40 5.4
31gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequ... 40 5.4
32gb|AC122818.4| Mus musculus BAC clone RP23-243O16 from 17, compl... 40 5.4
33emb|AL391139.19| Human DNA sequence from clone RP11-353K22 on ch... 40 5.4
34emb|CR383672.6| Zebrafish DNA sequence from clone DKEY-11P10 in ... 40 5.4
35emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complet... 40 5.4
36emb|X04650.1|HEHCMVU Human cytomegalovirus (HCMV) short unique r... 40 5.4
37emb|CR857765.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1528 (from cl... 40 5.4
38gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell... 40 5.4
39gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswel... 40 5.4
40dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.4
41dbj|AK075098.1| Homo sapiens cDNA FLJ90617 fis, clone PLACE10023... 40 5.4
42dbj|AK057052.1| Homo sapiens cDNA FLJ32490 fis, clone SKNSH10003... 40 5.4
43dbj|AK044158.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 5.4
44gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete... 40 5.4
45gb|AY074928.1| Homo sapiens epidermal growth factor receptor pat... 40 5.4
46gb|AF282168.1|AF282168 Homo sapiens DRC3 gene, complete cds 40 5.4
47gb|AF282167.1|AF282167 Homo sapiens DRC3 mRNA, complete cds 40 5.4
48emb|AJ504412.1|TRU504412 Takifugu rubripes mRNA for translin ass... 40 5.4
49emb|AJ504410.1|TRU504410 Takifugu rubripes egln1 gene (partial),... 40 5.4
50gb|AC005782.1|AC005782 Homo sapiens chromosome 19, cosmid R31855... 40 5.4
51dbj|AK000265.1| Homo sapiens cDNA FLJ20258 fis, clone COLF7250 40 5.4
52gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76... 40 5.4
53gb|U64917.1|GMU64917 Glycine max farnesylated protein GMFP7 mRNA... 40 5.4
54gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.4
55emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chr... 40 5.4 
>ref|XM_481609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2970

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 308 gcgccgtcatccagatgacctccatggagccc 339
           ||||||||||||||||||||||||||||||||
Sbjct: 98  gcgccgtcatccagatgacctccatggagccc 129
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 308      gcgccgtcatccagatgacctccatggagccc 339
                ||||||||||||||||||||||||||||||||
Sbjct: 14187680 gcgccgtcatccagatgacctccatggagccc 14187649
to top
>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0078D03
          Length = 176593

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                             
Query: 308   gcgccgtcatccagatgacctccatggagccc 339
             ||||||||||||||||||||||||||||||||
Sbjct: 91969 gcgccgtcatccagatgacctccatggagccc 91938
to top
>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0703C03
          Length = 162620

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 308  gcgccgtcatccagatgacctccatggagccc 339
            ||||||||||||||||||||||||||||||||
Sbjct: 3236 gcgccgtcatccagatgacctccatggagccc 3205
to top
>dbj|AK108337.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A07, full
           insert sequence
          Length = 790

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 308 gcgccgtcatccagatgacctccatggagccc 339
           ||||||||||||||||||||||||||||||||
Sbjct: 547 gcgccgtcatccagatgacctccatggagccc 578
to top
>gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complete sequence
          Length = 116951

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 322   atgacctccatggagcccagccc 344
             |||||||||||||||||||||||
Sbjct: 53520 atgacctccatggagcccagccc 53498
to top
>emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-187A6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188327

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 356   ccacctctgtcactggccatgac 378
             |||||||||||||||||||||||
Sbjct: 30630 ccacctctgtcactggccatgac 30652
to top
>ref|XM_478273.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1464

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 160 cgccgcagcgcccagctccgccgcc 184
           |||||| ||||||||||||||||||
Sbjct: 363 cgccgcggcgcccagctccgccgcc 339
to top
>gb|AC099038.2| Drosophila melanogaster clone BACR28A23, complete sequence
          Length = 164826

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     gaagcaaacccagtttcgtag 81
              |||||||||||||||||||||
Sbjct: 133398 gaagcaaacccagtttcgtag 133418
to top
>gb|AC097354.12| Mus musculus strain 129/Sv clone ct7-297f7 map X, complete sequence
          Length = 242318

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 343    cccggctccacctccacctctgtca 367
              ||||||||| |||||||||||||||
Sbjct: 197338 cccggctccgcctccacctctgtca 197362
to top
>gb|DQ174261.1| Streptomyces tsusimaensis strain ATCC 15141 putative conserved
            protein gene, partial cds; putative conserved protein,
            TetR-family regulatory protein,
            N5,N10-methylenetetrahydromethanopterin reductase,
            penicillin-binding protein, putative conserved protein,
            7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase,
            putative conserved proteins, necrosis inducing factor,
            conserved membrane-associated protein, transcriptional
            regulator, putative conserved protein, and discrete type
            II thioesterase genes, complete cds; valinomycin
            biosynthesis gene cluster, complete sequence; putative
            transposase gene, complete cds; and unknown gene
          Length = 39345

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 179  gccgcccctgctctccgtcga 199
            |||||||||||||||||||||
Sbjct: 1545 gccgcccctgctctccgtcga 1565
to top
>gb|AY129338.1| Mycobacteriophage Omega, complete sequence
          Length = 110865

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   atggggagatcgaggccgcgg 241
             |||||||||||||||||||||
Sbjct: 99229 atggggagatcgaggccgcgg 99209
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 160      cgccgcagcgcccagctccgccgcc 184
                |||||| ||||||||||||||||||
Sbjct: 18955616 cgccgcggcgcccagctccgccgcc 18955640
to top
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0430F03
          Length = 183095

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 160   cgccgcagcgcccagctccgccgcc 184
             |||||| ||||||||||||||||||
Sbjct: 57601 cgccgcggcgcccagctccgccgcc 57625
to top
>gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 of 74 of the complete
              sequence
          Length = 300896

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     gaagcaaacccagtttcgtag 81
              |||||||||||||||||||||
Sbjct: 273404 gaagcaaacccagtttcgtag 273424
to top
>emb|AL672082.15| Mouse DNA sequence from clone RP23-67B21 on chromosome X, complete
             sequence
          Length = 243789

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 343   cccggctccacctccacctctgtca 367
             ||||||||| |||||||||||||||
Sbjct: 90211 cccggctccgcctccacctctgtca 90235
to top
>emb|X69465.1|SSRYRA S.scrofa gene for skeletal muscle ryanodine receptor
          Length = 29699

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   cccagccccggctccacctccacct 361
             |||||||||| ||||||||||||||
Sbjct: 27975 cccagccccgtctccacctccacct 27951
to top
>gb|AC117734.13| Mus musculus chromosome 1, clone RP24-130L9, complete sequence
          Length = 167235

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ccacctccacctctgtcact 369
             ||||||||||||||||||||
Sbjct: 47768 ccacctccacctctgtcact 47749
to top
>gb|AC128859.4| Rattus norvegicus 10 BAC CH230-436I22 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 156078

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     cttttccaacccccctccga 101
              ||||||||||||||||||||
Sbjct: 119843 cttttccaacccccctccga 119824
to top
>gb|BC015763.1| Homo sapiens EPS8-like 1, transcript variant 2, mRNA (cDNA clone
            MGC:23164 IMAGE:4871012), complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1367 cccagccccggccccacctccagctctg 1394
to top
>ref|NM_133180.1| Homo sapiens EPS8-like 1 (EPS8L1), transcript variant 1, mRNA
          Length = 2543

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1720 cccagccccggccccacctccagctctg 1747
to top
>ref|NM_017729.2| Homo sapiens EPS8-like 1 (EPS8L1), transcript variant 2, mRNA
          Length = 2221

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1398 cccagccccggccccacctccagctctg 1425
to top
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome
          Length = 235645

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gaggatgggctgccggtgcc 260
              ||||||||||||||||||||
Sbjct: 205608 gaggatgggctgccggtgcc 205627
to top
>ref|NM_001032620.1| Takifugu rubripes translin associated factor X (trax), mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gcggaggatgggctgccggt 257
           ||||||||||||||||||||
Sbjct: 132 gcggaggatgggctgccggt 113
to top
>gb|AY486480.1|AY486470S11 Human herpesvirus 5 strain Toledo genome, partial sequence
          Length = 30210

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gaggatgggctgccggtgcc 260
            ||||||||||||||||||||
Sbjct: 5341 gaggatgggctgccggtgcc 5360
to top
>gb|AF370395.1| Homo sapiens PP10566 mRNA, complete cds
          Length = 2559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1733 cccagccccggccccacctccagctctg 1760
to top
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence
          Length = 262483

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cctccctcaactcaaagact 24
              ||||||||||||||||||||
Sbjct: 167161 cctccctcaactcaaagact 167142
to top
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence
          Length = 233739

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gaggatgggctgccggtgcc 260
             ||||||||||||||||||||
Sbjct: 20781 gaggatgggctgccggtgcc 20762
to top
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence
          Length = 229209

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gaggatgggctgccggtgcc 260
            ||||||||||||||||||||
Sbjct: 3399 gaggatgggctgccggtgcc 3418
to top
>gb|AC146906.1| Human Herpesvirus 5 TR-BAC isolate, complete sequence
          Length = 234881

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gaggatgggctgccggtgcc 260
            ||||||||||||||||||||
Sbjct: 4537 gaggatgggctgccggtgcc 4556
to top
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence
          Length = 229700

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  gaggatgggctgccggtgcc 260
            ||||||||||||||||||||
Sbjct: 3398 gaggatgggctgccggtgcc 3417
to top
>gb|AC122818.4| Mus musculus BAC clone RP23-243O16 from 17, complete sequence
          Length = 167735

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    gctccacctccacctctgtc 366
              ||||||||||||||||||||
Sbjct: 112706 gctccacctccacctctgtc 112725
to top
>emb|AL391139.19| Human DNA sequence from clone RP11-353K22 on chromosome X Contains the
             gene for a novel GTPase and two CpG islands, complete
             sequence
          Length = 128899

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cctccctcaactcaaagact 24
             ||||||||||||||||||||
Sbjct: 36169 cctccctcaactcaaagact 36188
to top
>emb|CR383672.6| Zebrafish DNA sequence from clone DKEY-11P10 in linkage group 24,
              complete sequence
          Length = 231583

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    ccggctccacctccacctct 363
              ||||||||||||||||||||
Sbjct: 119167 ccggctccacctccacctct 119186
to top
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome
          Length = 229354

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gaggatgggctgccggtgcc 260
              ||||||||||||||||||||
Sbjct: 199392 gaggatgggctgccggtgcc 199411
to top
>emb|X04650.1|HEHCMVU Human cytomegalovirus (HCMV) short unique region, short repeats, and
             part of long repeat
          Length = 43275

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gaggatgggctgccggtgcc 260
             ||||||||||||||||||||
Sbjct: 13898 gaggatgggctgccggtgcc 13917
to top
>emb|CR857765.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1528 (from clone DKFZp469L1528)
          Length = 2769

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 ccggctccacctccacctct 363
           ||||||||||||||||||||
Sbjct: 495 ccggctccacctccacctct 476
to top
>gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell Park Cancer Institute
              Drosophila BAC library) complete sequence
          Length = 169138

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    cccggctccacctccacctc 362
              ||||||||||||||||||||
Sbjct: 152536 cccggctccacctccacctc 152517
to top
>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 178607

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   cccggctccacctccacctc 362
             ||||||||||||||||||||
Sbjct: 14995 cccggctccacctccacctc 14976
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     gacagcgccgtcatccagat 323
               ||||||||||||||||||||
Sbjct: 2107488 gacagcgccgtcatccagat 2107469
to top
>dbj|AK075098.1| Homo sapiens cDNA FLJ90617 fis, clone PLACE1002329, weakly similar to
            EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8
          Length = 2535

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1732 cccagccccggccccacctccagctctg 1759
to top
>dbj|AK057052.1| Homo sapiens cDNA FLJ32490 fis, clone SKNSH1000301, highly similar to
            Homo sapiens DRC3 mRNA
          Length = 1977

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1174 cccagccccggccccacctccagctctg 1201
to top
>dbj|AK044158.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830095O03 product:unclassifiable, full
            insert sequence
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    atccctccctcaactcaaag 21
            ||||||||||||||||||||
Sbjct: 994  atccctccctcaactcaaag 1013
to top
>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence
          Length = 137506

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    ccagccccggctccacctccacct 361
              ||||||||||| ||||||||||||
Sbjct: 113943 ccagccccggccccacctccacct 113966
to top
>gb|AY074928.1| Homo sapiens epidermal growth factor receptor pathway substrate 8
            related protein 1 (EPS8R1) mRNA, complete cds
          Length = 2557

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1734 cccagccccggccccacctccagctctg 1761
to top
>gb|AF282168.1|AF282168 Homo sapiens DRC3 gene, complete cds
          Length = 5985

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 4481 cccagccccggccccacctccagctctg 4508
to top
>gb|AF282167.1|AF282167 Homo sapiens DRC3 mRNA, complete cds
          Length = 1829

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1026 cccagccccggccccacctccagctctg 1053
to top
>emb|AJ504412.1|TRU504412 Takifugu rubripes mRNA for translin associated factor X (trax gene)
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gcggaggatgggctgccggt 257
           ||||||||||||||||||||
Sbjct: 132 gcggaggatgggctgccggt 113
to top
>emb|AJ504410.1|TRU504410 Takifugu rubripes egln1 gene (partial), trax gene and disc1 gene
          Length = 44904

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gcggaggatgggctgccggt 257
            ||||||||||||||||||||
Sbjct: 8658 gcggaggatgggctgccggt 8639
to top
>gb|AC005782.1|AC005782 Homo sapiens chromosome 19, cosmid R31855, complete sequence
          Length = 35197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 4481 cccagccccggccccacctccagctctg 4508
to top
>dbj|AK000265.1| Homo sapiens cDNA FLJ20258 fis, clone COLF7250
          Length = 2228

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 337  cccagccccggctccacctccacctctg 364
            |||||||||||| ||||||||| |||||
Sbjct: 1398 cccagccccggccccacctccagctctg 1425
to top
>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete
              sequence
          Length = 294272

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    cccggctccacctccacctc 362
              ||||||||||||||||||||
Sbjct: 220255 cccggctccacctccacctc 220236
to top
>gb|U64917.1|GMU64917 Glycine max farnesylated protein GMFP7 mRNA, partial cds
          Length = 583

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 tccacctccacctctgtcac 368
           ||||||||||||||||||||
Sbjct: 130 tccacctccacctctgtcac 111
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     gacagcgccgtcatccagat 323
               ||||||||||||||||||||
Sbjct: 2127388 gacagcgccgtcatccagat 2127369
to top
>emb|AL844536.13| Mouse DNA sequence from clone RP23-22A15 on chromosome 2, complete
             sequence
          Length = 245993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     atccctccctcaactcaaag 21
             ||||||||||||||||||||
Sbjct: 39481 atccctccctcaactcaaag 39500


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,265,657
Number of Sequences: 3902068
Number of extensions: 3265657
Number of successful extensions: 65618
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65343
Number of HSP's gapped (non-prelim): 275
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top