>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2336

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 285  MLRLARICAARRHSGRAVSALLARPRPCVVSHSLGHNCH 401
            M R     A R H  +  + +L RP P  VSH   H CH
Sbjct: 2018 MKRSISTLAPRPHGTQLCNTVLDRPPPSQVSHHHHHRCH 2056

>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2327

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 285  MLRLARICAARRHSGRAVSALLARPRPCVVSHSLGHNCH 401
            M R     A R H  +  S +L RP P   SH   H CH
Sbjct: 2009 MKRSISTLAPRPHGTQLCSTVLDRPPPSQASHHHHHRCH 2047

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 285  MLRLARICAARRHSGRAVSALLARPRPCVVSHSLGHNCH 401
            M R     A R H+ R  S  L RP P    H   H CH
Sbjct: 2020 MKRSISTLAPRPHTARLGSTALDRPAPSQAPHHHHHRCH 2058

>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 225 GSAGGRESGGTLAGRQAGRQMLRLARICAARRHSGRAVSALLARPRPCVVSHSLGHNC 398
           G AGGR  GG   G Q G   L     C     SGR         + CV+  ++ +NC
Sbjct: 22  GGAGGRRGGGHGRGSQCGSTTLSYTCYCCG--ESGR-------NAKNCVLLGNICYNC 70

>CUC3A_HAECO (P16253) Cuticle collagen 3A3|
          Length = 295

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 254 HFGWQAGRQADASSCKNLCCKTAFRPCRIRAPRPP 358
           HFG +  RQA  SS +N  C++  RP     P PP
Sbjct: 72  HFGNRTARQAITSSEENGGCESCCRPGPPGPPGPP 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,945,075
Number of Sequences: 219361
Number of extensions: 731720
Number of successful extensions: 2742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)