>IF2_SHISS (Q3YX73) Translation initiation factor IF-2|
          Length = 890

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 251 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287

>IF2_SHIFL (Q83JF9) Translation initiation factor IF-2|
          Length = 882

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 243 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 279

>IF2_SHIDS (Q32BG5) Translation initiation factor IF-2|
          Length = 890

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 251 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287

>IF2_SHIBS (Q31W47) Translation initiation factor IF-2|
          Length = 882

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 243 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 279

>IF2_ECOLI (P0A705) Translation initiation factor IF-2|
          Length = 890

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 251 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287

>IF2_ECOL6 (P59587) Translation initiation factor IF-2|
          Length = 890

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 251 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287

>IF2_ECO57 (P0A706) Translation initiation factor IF-2|
          Length = 890

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 285 RGRGRVAPSLRPRRGDERRASGEEQQEERASRASSHG 175
           RGRGR A + RP++G++   S  +++E RA+     G
Sbjct: 251 RGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKG 287

>RS3_CORGL (Q8NT01) 30S ribosomal protein S3|
          Length = 248

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 279 RGRVAPSLRPRRGDERRASGEEQQE 205
           RGR   + RPRRG +RR   E++QE
Sbjct: 223 RGRGDRNARPRRGGQRRQRAEQKQE 247

>RS3_COREF (P59181) 30S ribosomal protein S3|
          Length = 248

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 279 RGRVAPSLRPRRGDERRASGEEQQE 205
           RGR   + RPRRG +RR   E++QE
Sbjct: 223 RGRGDRNARPRRGGQRRQRAEQKQE 247

>JHD1A_HUMAN (Q9Y2K7) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11) (F-box protein FBL7)
           (F-box protein Lilina)
          Length = 1162

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 264 PSLRPRRGDERRASGEEQQEE 202
           P+  P+RGDE    GEE++EE
Sbjct: 841 PARTPQRGDEEGLGGEEEEEE 861

>RS3_CORDI (Q6NJC9) 30S ribosomal protein S3|
          Length = 248

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 279 RGRVAPSLRPRRGDERRASGEEQQE 205
           RGR   + RPRRG +RR   E++QE
Sbjct: 223 RGRGDRNGRPRRGGQRRQRSEQKQE 247

>IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 630

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 267 APSLRPRRGDERRASGEEQQEERASRASSHGASCV*LCVSSRLTDRPSNGSPGADLGQ 94
           AP+ R   G   RAS     ++R S   + G+S +    + RL+ +PS+G     LG+
Sbjct: 118 APASREHLGPHIRASSSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGK 175

>IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 630

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 267 APSLRPRRGDERRASGEEQQEERASRASSHGASCV*LCVSSRLTDRPSNGSPGADLGQ 94
           AP+ R   G   RAS     ++R S   + G+S +    + RL+ +PS+G     LG+
Sbjct: 118 APASREHLGPHIRASSSSSIKQRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGK 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,216,543
Number of Sequences: 219361
Number of extensions: 305868
Number of successful extensions: 1029
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)