ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41e01 |
|---|---|
| Clone Library Name | barley_pub |
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 43.9 bits (102), Expect = 2e-04 Identities = 20/57 (35%), Positives = 36/57 (63%) Frame = +2 Query: 266 TVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQ 436 T+ ALA LY + D + A+ +L++FQ + AWQ+ S+L+ + S++E +F +Q Sbjct: 3 TLLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDDSSIEAKLFAAQ 59
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/56 (35%), Positives = 34/56 (60%) Frame = +2 Query: 269 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQ 436 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +Q Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQ 65
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/56 (35%), Positives = 34/56 (60%) Frame = +2 Query: 269 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLMFCSQ 436 V +A+ ALYH PD + + A WL + Q ++ AW+++D LL ++E+ F +Q Sbjct: 11 VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIR-QDVESCYFAAQ 65
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 32.3 bits (72), Expect = 0.51 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%) Frame = +2 Query: 158 PRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTA-ADR 334 PR S Y ++ + E++ FGA +A +A YH P D R AD Sbjct: 130 PRSSDVYVSYDYGKSFN-KISEKLNFGAGNNTEAV------VAQFYHSPADNKRYIFADA 182 Query: 335 WLQKFQHTLD----------AWQVADSLLHDESSNL 412 + Q T D ++ AD LLH ++SNL Sbjct: 183 YAQYLWITFDFCNTIHGFSIPFRAADLLLHSKASNL 218
>HPPD_TETTH (Q27203) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (F-antigen homolog) (TF-AG) Length = 404 Score = 31.6 bits (70), Expect = 0.87 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +2 Query: 296 HHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDESSNLETLM 424 + PD+ + +AAD W +K W V DS++H E S+L +++ Sbjct: 201 NQPDNMMTSAAD-WYEKTLDFHRFWSVDDSMIHTEFSSLRSIV 242
>IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 protein)| Length = 963 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = +2 Query: 218 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 385 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 386 LLHDE 400 LL + Sbjct: 65 LLQPD 69
>IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)| Length = 963 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = +2 Query: 218 EEEVGFGADMEAQA----TATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADS 385 EE++G A A V++AL LY+ P+ + A +WL + Q + AW + Sbjct: 5 EEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQ 64 Query: 386 LLHDE 400 LL + Sbjct: 65 LLQPD 69
>MURA_BORPE (Q7VSZ3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +2 Query: 185 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 331 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>MURA_BORBR (Q7WDY6) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 422 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +2 Query: 185 YSRKRAAGGSVEEEVGFGADMEAQATA--TVKEALAAL--------YHHPDDTIRTAAD 331 + R RA G E GF DM+AQ A TV + A + Y H + R AD Sbjct: 286 HGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCRLGAD 344
>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)| Length = 1616 Score = 29.6 bits (65), Expect = 3.3 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = +2 Query: 104 SSSIKPYPPRIAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATVKEAL 283 S+S P+PPRI GRR T + ++ YS EVG Sbjct: 738 STSGGPHPPRIGGRRRFTAEQK--LKSYSEPEKM-----NEVGLTRGYSP---------- 780 Query: 284 AALYHHP---DDTIRTAADRW 337 + HP +DT+ T ADRW Sbjct: 781 ---HQHPRTSEDTVGTFADRW 798
>IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13) (RanBP13)| (Karyopherin 13) (Kap13) Length = 963 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 269 VKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSLLHDE 400 V++AL LY+ P+ + A +WL + Q + AW + LL + Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD 69
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 29.3 bits (64), Expect = 4.3 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +2 Query: 119 PYPPRIAGRRSSTPRKSSTVEGYSRKRAAGGSVEEEVGFGADMEAQATATV------KEA 280 P PPR AG R+ PR + E S R G V G D EA A A V +E Sbjct: 274 PEPPR-AGPRAEHPRGA---ERGSLWRF--GDVPWPCPGGGDPEAMAAALVARGPPLEEQ 327 Query: 281 LAALYHHPDDTIRTAADRWLQKFQHTLDAWQV 376 A + +R DR+LQ+F+ ++ W++ Sbjct: 328 GALKRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>ESYN_GIBPU (Q00868) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] (Fragment) Length = 983 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 17/75 (22%) Frame = +2 Query: 215 VEEEVGFGADMEAQATATVKEALAALYHH--------------PDDTIR---TAADRWLQ 343 + E GF ++ A + AL A++HH D+ +R T A+R LQ Sbjct: 756 IANEAGFRVEVSAARQWSQNGALDAVFHHFPSSNTDRTLIQFPTDNQLRSSLTLANRPLQ 815 Query: 344 KFQHTLDAWQVADSL 388 K Q A QV +SL Sbjct: 816 KLQRRRAALQVRESL 830
>Y4633_RHILO (Q98DM8) UPF0102 protein mlr4633| Length = 125 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 245 MEAQATATVKEALAALYHHPDDTIRTAADRWLQK 346 +E +A ++ EA+ A+ H + I AAD WL + Sbjct: 59 VEVKARRSLMEAMEAIGHESERRIEAAADIWLSR 92
>IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 380 Score = 28.1 bits (61), Expect = 9.7 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +2 Query: 140 GRRSSTPRKSSTVEGYSRKRAAG-----GSVEEEVGFGADMEAQATATV------KEALA 286 G R P ++ E + R G G V G D EA A A V +E A Sbjct: 269 GDREPKPTRAGPREEHPRGAGRGSLWRFGDVPWPCPGGGDPEAMAAALVARGPPLEEQGA 328 Query: 287 ALYHHPDDTIRTAADRWLQKFQHTLDAWQV 376 + +R DR+LQ+F+ ++ W++ Sbjct: 329 LRRYLRVQQVRWHPDRFLQRFRSQIETWEL 358
>IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 28.1 bits (61), Expect = 9.7 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +2 Query: 140 GRRSSTPRKSSTVEGYSRKRAAG-----GSVEEEVGFGADMEAQATATV------KEALA 286 G R P ++ E + R G G V G D EA A A V +E A Sbjct: 270 GDREPKPTRAGPREEHPRGAGRGSLWRFGDVPWPCPGGGDPEAMAAALVARGPPLEEQGA 329 Query: 287 ALYHHPDDTIRTAADRWLQKFQHTLDAWQV 376 + +R DR+LQ+F+ ++ W++ Sbjct: 330 LRRYLRVQQVRWHPDRFLQRFRSQIETWEL 359
>ESYN_FUSEQ (Q00869) Enniatin synthetase [Includes: N-methylcyclopeptide| synthetase (EC 6.3.2.-); S-adenosyl-L-methionine-dependent N-methyltransferase (EC 2.1.1.-)] Length = 3131 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Frame = +2 Query: 215 VEEEVGFGADMEAQATATVKEALAALYHH--PDDTIR---------------TAADRWLQ 343 + +E GF ++ A + AL A++HH P T R T A+R LQ Sbjct: 2379 IAKEAGFRVEVSAARQWSQSGALDAVFHHFPPSSTDRTLIQFPTDNELRSSLTLANRPLQ 2438 Query: 344 KFQHTLDAWQVADSL 388 K Q A QV + L Sbjct: 2439 KLQRRRAALQVREKL 2453
>GLND_XANOR (Q5H1D3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 869 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +2 Query: 212 SVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSL 388 ++ E +GF D+E+ E + ++ IR +DR LQ+F+ D +SL Sbjct: 279 TLAERLGFADDLESLGV----EKMMQRFYRSAALIRRISDRLLQRFEEQFDGEATPESL 333
>GLND_XANOM (Q2P497) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 869 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +2 Query: 212 SVEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTAADRWLQKFQHTLDAWQVADSL 388 ++ E +GF D+E+ E + ++ IR +DR LQ+F+ D +SL Sbjct: 279 TLAERLGFADDLESLGV----EKMMQRFYRSAALIRRISDRLLQRFEEQFDGEATPESL 333
>SORL_HUMAN (Q92673) Sortilin-related receptor precursor (Sorting| protein-related receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2214 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = +2 Query: 215 VEEEVGFGADMEAQATATVKEALAALYHHPDDTIRTA-ADRWLQKFQHTLD--------- 364 + +++ FG ++A +A YH P D R AD + Q T D Sbjct: 148 ISDKLNFGLGNRSEAV------IAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFS 201 Query: 365 -AWQVADSLLHDESSNL 412 ++ AD LLH ++SNL Sbjct: 202 IPFRAADLLLHSKASNL 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,863,474 Number of Sequences: 219361 Number of extensions: 620543 Number of successful extensions: 2759 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2758 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
