ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mR... 335 7e-89
2ref|NM_197011.1| Oryza sativa (japonica cultivar-group) putative... 212 7e-52
3dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
4gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 172 6e-40
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 172 6e-40
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 172 6e-40
7gb|AF461150.2| Heterodera glycines Hsp90 mRNA, complete cds 48 0.024
8emb|AJ005784.1|BPAJ5784 Brugia pahangi mRNA for heat shock prote... 46 0.095
9emb|AJ005785.1|BPAJ5785 Brugia pahangi hsp90 gene and 5' region 46 0.095
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.38
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
12gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
13gb|AC115846.7| Mus musculus chromosome 1, clone RP24-245O4, comp... 42 1.5
14gb|AC164101.4| Mus musculus BAC clone RP23-421F16 from chromosom... 42 1.5
15gb|DQ410577.1| HIV-1 isolate C96v1e17 from USA envelope glycopro... 42 1.5
16gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 42 1.5
17emb|CR847503.8| Zebrafish DNA sequence from clone DKEY-20D21 in ... 42 1.5
18emb|AL450337.24| Human DNA sequence from clone RP11-51B10 on chr... 42 1.5
19gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL... 42 1.5
20gb|AY932044.1| HIV-1 isolate TZMDE717-1-5 from Tanzania envelope... 42 1.5
21gb|AY931992.1| HIV-1 isolate TZMDE709-4-4 from Tanzania envelope... 42 1.5
22gb|AY931578.1| HIV-1 isolate TZMDE645-4-5 from Tanzania envelope... 42 1.5
23gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 42 1.5
24gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complet... 42 1.5
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27gb|AY116033.1| HIV-1 isolate TZB0210 from Tanzania envelope glyc... 42 1.5
28gb|AC152168.2| Mus musculus BAC clone RP23-96H18 from chromosome... 42 1.5
29gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, comple... 42 1.5
30dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
31dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
32gb|AY955537.1| Homalonychus selenopoides voucher NMNH g403_MwkMt... 42 1.5
33gb|AY955536.1| Homalonychus selenopoides voucher NMNH g347_MwkMt... 42 1.5
34gb|AY955527.1| Homalonychus selenopoides voucher NMNH g151_KofaN... 42 1.5
35gb|AY955524.1| Homalonychus selenopoides voucher NMNH g150_HSRVP... 42 1.5
36gb|AY955518.1| Homalonychus selenopoides voucher NMNH g359_EagMt... 42 1.5
37gb|AY955517.1| Homalonychus selenopoides voucher NMNH g346_EagMt... 42 1.5
38gb|AY955516.1| Homalonychus selenopoides voucher NMNH g174_EagMt... 42 1.5
39gb|U21100.1|HIV1U21100 Human immunodeficiency virus type 1 isola... 42 1.5
40gb|U45449.1|EBU45449 Eimeria bovis heat shock protein 90 (hsp90)... 42 1.5
41gb|U55216.1|ECU55216 Equus caballus Mx protein homolog mRNA, com... 42 1.5
42gb|AC125214.4| Mus musculus BAC clone RP23-84H24 from chromosome... 42 1.5
43gb|U23116.1|HIV1U23116 Human immunodeficiency virus type 1 isola... 42 1.5
44gb|U23115.1|HIV1U23115 Human immunodeficiency virus type 1 isola... 42 1.5
45gb|U23114.1|HIV1U23114 Human immunodeficiency virus type 1 isola... 42 1.5
46gb|U23113.1|HIV1U23113 Human immunodeficiency virus type 1 isola... 42 1.5
47gb|U23112.1|HIV1U23112 Human immunodeficiency virus type 1 isola... 42 1.5
48ref|NM_111533.2| Arabidopsis thaliana unknown protein AT3G06570 ... 40 5.9
49ref|NM_105592.3| Arabidopsis thaliana RNA binding / nucleic acid... 40 5.9
50ref|NM_202382.1| Arabidopsis thaliana RNA binding / protein tran... 40 5.9
51ref|NM_119619.2| Arabidopsis thaliana unknown protein AT4G34540 ... 40 5.9
52ref|NM_113556.1| Arabidopsis thaliana signal transducer AT3G2649... 40 5.9
53gb|AC149321.2| Phakopsora pachyrhizi clone JGIAFNA-101K19, compl... 40 5.9
54gb|DQ233494.1| Tamarix ramosissima clone T1B9 microsatellite seq... 40 5.9
55gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, comple... 40 5.9
56gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.9
57gb|DQ410309.1| HIV-1 isolate H23v2ed4 from USA envelope glycopro... 40 5.9
58gb|AC140333.2| Mus musculus BAC clone RP24-326A21 from chromosom... 40 5.9
59gb|AC138894.2| Homo sapiens chromosome 16 clone RP11-435I10, com... 40 5.9
60gb|AC002425.1|HUAC002425 Homo sapiens Chromosome 16 BAC clone CI... 40 5.9
61gb|AC002544.1|HUAC002544 Homo sapiens Chromosome 16 BAC clone CI... 40 5.9
62ref|XM_805562.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.9
63gb|AC122381.2| Mus musculus BAC clone RP23-477C4 from chromosome... 40 5.9
64gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosom... 40 5.9
65emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chro... 40 5.9
66emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase s... 40 5.9
67gb|AY062994.1| Arabidopsis thaliana unknown protein (At3g06570) ... 40 5.9
68gb|AF370336.1| Arabidopsis thaliana unknown protein (At3g06570) ... 40 5.9
69emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 5.9
70emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 40 5.9
71emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.9
72emb|AJ401034.1|HIM401034 Human immunodeficiency virus type 1 pro... 40 5.9
73emb|CR759941.1| Rat DNA sequence from clone RP32-551O16 on chrom... 40 5.9
74gb|AY120741.1| Arabidopsis thaliana unknown protein (At4g34530:A... 40 5.9
75gb|AC097497.2| Homo sapiens BAC clone RP11-324J17 from 4, comple... 40 5.9
76gb|AC026411.7| Homo sapiens chromosome 16 clone CTC-543N4, compl... 40 5.9
77gb|AC008956.8| Homo sapiens chromosome 16 clone CTD-2343L5, comp... 40 5.9
78gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.9
79dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
80gb|AC084213.19|AC084213 Mus musculus 1 BAC RP23-470F8 (Roswell P... 40 5.9
81emb|BX814173.1|CNS0AC9C Arabidopsis thaliana Full-length cDNA Co... 40 5.9
82emb|BX815179.1|CNS0ABFM Arabidopsis thaliana Full-length cDNA Co... 40 5.9
83emb|BX815210.1|CNS0AAGF Arabidopsis thaliana Full-length cDNA Co... 40 5.9
84gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, comp... 40 5.9
85gb|AC020765.8| Homo sapiens chromosome 16 clone RP11-666O2, comp... 40 5.9
86gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23... 40 5.9
87gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5... 40 5.9
88gb|AC008262.4|AC008262 Genomic sequence for Arabidopsis thaliana... 40 5.9
89gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, com... 40 5.9
90dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
91dbj|AP001298.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.9
92emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chro... 40 5.9
93emb|AL359400.4|CNS05TEW Human chromosome 14 DNA sequence BAC R-1... 40 5.9
94gb|AC090052.15| Homo sapiens 12 BAC RP11-295G12 (Roswell Park Ca... 40 5.9
95gb|AY955542.1| Homalonychus selenopoides voucher NMNH g21_Tacna ... 40 5.9
96gb|AY955532.1| Homalonychus selenopoides voucher NMNH g190_MarMt... 40 5.9
97gb|AY955531.1| Homalonychus selenopoides voucher NMNH g141_MarMt... 40 5.9
98gb|AY955530.1| Homalonychus selenopoides voucher NMNH g142_MarMt... 40 5.9
99gb|AY955529.1| Homalonychus selenopoides voucher NMNH g15_MarMtn... 40 5.9
100gb|AC169080.4| Erinaceus europaeus, clone XX-29441557E23, comple... 40 5.9
101emb|AM000053.1| Human immunodeficiency virus type 1 complete gen... 40 5.9
102emb|AL049734.11|HSJ154J13 Human DNA sequence from clone RP1-154J... 40 5.9
103gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complet... 40 5.9
104emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chr... 40 5.9
105emb|AL929511.11| Mouse DNA sequence from clone RP23-387F22 on ch... 40 5.9
106emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-1... 40 5.9
107emb|AL929506.8| Mouse DNA sequence from clone RP23-223I8 on chro... 40 5.9
108emb|AL672267.10| Mouse DNA sequence from clone RP23-377K9 on chr... 40 5.9
109emb|AL772402.5| Mouse DNA sequence from clone RP23-65J9 on chrom... 40 5.9 
>gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mRNA, complete cds
          Length = 3319

 Score =  335 bits (169), Expect = 7e-89
 Identities = 187/193 (96%)
 Strand = Plus / Plus

                                                                       
Query: 244 catggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccaccc 303
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 8   catggaggcgcaggccacggcgacggtgaaggaggcgctcgcggcgctgtaccaccaccc 67

                                                                       
Query: 304 cgacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttga 363
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 68  cgacgacgccatccgcgccgctgccgaccgctggctgcagaagtttcagcacacgctcga 127

                                                                       
Query: 364 cgcgtggcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactctcat 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 128 cgcgtggcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcat 187

                        
Query: 424 gttttgttctcag 436
           |||||||||||||
Sbjct: 188 gttttgttctcag 200
to top
>ref|NM_197011.1| Oryza sativa (japonica cultivar-group) putative nuclear transport
           receptor (OSJNBa0026O12.16), mRNA
          Length = 366

 Score =  212 bits (107), Expect = 7e-52
 Identities = 158/175 (90%)
 Strand = Plus / Plus

                                                                       
Query: 245 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 304
           ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 1   atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 60

                                                                       
Query: 305 gacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 364
           |||||| |||  |||||||| |||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 61  gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 120

                                                                  
Query: 365 gcgtggcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactc 419
           |||||||||||||||||||||||||| ||||| ||||| || ||| | |||||||
Sbjct: 121 gcgtggcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactc 175
to top
>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full
           insert sequence
          Length = 3529

 Score =  212 bits (107), Expect = 7e-52
 Identities = 158/175 (90%)
 Strand = Plus / Plus

                                                                       
Query: 245 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 304
           ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 224 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 283

                                                                       
Query: 305 gacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 364
           |||||| |||  |||||||| |||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 284 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 343

                                                                  
Query: 365 gcgtggcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactc 419
           |||||||||||||||||||||||||| ||||| ||||| || ||| | |||||||
Sbjct: 344 gcgtggcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactc 398



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 85  cgtttcaaatttcttcttctcctcctccataaaaccctacccgcccc 131
           |||||||||||||||  |||||||| || ||||||||||||| ||||
Sbjct: 24  cgtttcaaatttctttctctcctccgccctaaaaccctacccacccc 70
to top
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score =  172 bits (87), Expect = 6e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                         
Query: 245   atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 304
             ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 29035 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 28976

                                                                         
Query: 305   gacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 364
             |||||| |||  |||||||| |||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 28975 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 28916

                        
Query: 365   gcgtggcaggt 375
             |||||||||||
Sbjct: 28915 gcgtggcaggt 28905



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 85    cgtttcaaatttcttcttctcctcctccataaaaccctacccgcccc 131
             |||||||||||||||  |||||||| || ||||||||||||| ||||
Sbjct: 29235 cgtttcaaatttctttctctcctccgccctaaaaccctacccacccc 29189



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 370   gcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactc 419
             ||||||||||||||||||||| ||||| ||||| || ||| | |||||||
Sbjct: 27967 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactc 27918
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  172 bits (87), Expect = 6e-40
 Identities = 120/131 (91%)
 Strand = Plus / Plus

                                                                            
Query: 245      atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 304
                ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 17343244 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 17343303

                                                                            
Query: 305      gacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 364
                |||||| |||  |||||||| |||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 17343304 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 17343363

                           
Query: 365      gcgtggcaggt 375
                |||||||||||
Sbjct: 17343364 gcgtggcaggt 17343374



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 85       cgtttcaaatttcttcttctcctcctccataaaaccctacccgcccc 131
                |||||||||||||||  |||||||| || ||||||||||||| ||||
Sbjct: 17343044 cgtttcaaatttctttctctcctccgccctaaaaccctacccacccc 17343090



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 370      gcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactc 419
                ||||||||||||||||||||| ||||| ||||| || ||| | |||||||
Sbjct: 17344312 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactc 17344361
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  172 bits (87), Expect = 6e-40
 Identities = 120/131 (91%)
 Strand = Plus / Plus

                                                                            
Query: 245      atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 304
                ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 17352284 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 17352343

                                                                            
Query: 305      gacgacaccatccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 364
                |||||| |||  |||||||| |||||||| ||||||||| |||| ||||||||||| |||
Sbjct: 17352344 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 17352403

                           
Query: 365      gcgtggcaggt 375
                |||||||||||
Sbjct: 17352404 gcgtggcaggt 17352414



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 85       cgtttcaaatttcttcttctcctcctccataaaaccctacccgcccc 131
                |||||||||||||||  |||||||| || ||||||||||||| ||||
Sbjct: 17352084 cgtttcaaatttctttctctcctccgccctaaaaccctacccacccc 17352130



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 370      gcaggtagctgacagcttactgcatgacgaaagcagcaatttagagactc 419
                ||||||||||||||||||||| ||||| ||||| || ||| | |||||||
Sbjct: 17353352 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactc 17353401
to top
>gb|AF461150.2| Heterodera glycines Hsp90 mRNA, complete cds
          Length = 2247

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 88   ttcaaatttcttcttctcctcctc 111
            ||||||||||||||||||||||||
Sbjct: 1644 ttcaaatttcttcttctcctcctc 1621
to top
>emb|AJ005784.1|BPAJ5784 Brugia pahangi mRNA for heat shock protein 90
          Length = 2527

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 89   tcaaatttcttcttctcctcctc 111
            |||||||||||||||||||||||
Sbjct: 1700 tcaaatttcttcttctcctcctc 1678
to top
>emb|AJ005785.1|BPAJ5785 Brugia pahangi hsp90 gene and 5' region
          Length = 4686

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 89   tcaaatttcttcttctcctcctc 111
            |||||||||||||||||||||||
Sbjct: 3510 tcaaatttcttcttctcctcctc 3488
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 11      ctctcgtctctcctcctcactacccc 36
               |||||| |||||||||||||||||||
Sbjct: 8097099 ctctcggctctcctcctcactacccc 8097074
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 11      ctctcgtctctcctcctcactacccc 36
               |||||| |||||||||||||||||||
Sbjct: 8094934 ctctcggctctcctcctcactacccc 8094909
to top
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 11    ctctcgtctctcctcctcactacccc 36
             |||||| |||||||||||||||||||
Sbjct: 28529 ctctcggctctcctcctcactacccc 28504
to top
>gb|AC115846.7| Mus musculus chromosome 1, clone RP24-245O4, complete sequence
          Length = 170731

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    aatttcttcttctcctcctcc 112
             |||||||||||||||||||||
Sbjct: 81240 aatttcttcttctcctcctcc 81260
to top
>gb|AC164101.4| Mus musculus BAC clone RP23-421F16 from chromosome 8, complete sequence
          Length = 218236

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     tttcttcttctcctcctccat 114
              |||||||||||||||||||||
Sbjct: 158153 tttcttcttctcctcctccat 158133
to top
>gb|DQ410577.1| HIV-1 isolate C96v1e17 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2601

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1463 caattgtctctcatctctcctcctc 1439
to top
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 134   atcgccggccgcagatccagtacgc 158
             ||||||||| |||||||||||||||
Sbjct: 63731 atcgccggcagcagatccagtacgc 63755
to top
>emb|CR847503.8| Zebrafish DNA sequence from clone DKEY-20D21 in linkage group 8,
             complete sequence
          Length = 217514

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    tcaaatttcttcttctcctcctcca 113
             |||||||| ||||||||||||||||
Sbjct: 24505 tcaaatttattcttctcctcctcca 24481
to top
>emb|AL450337.24| Human DNA sequence from clone RP11-51B10 on chromosome 10 Contains the
             5' end of the PARD3 gene for par-3 partitioning defective
             3 homolog (C.elegans), a novel gene, a pseudogene similar
             to part of synovial sarcoma translocation, chromosome 18
             protein (SS18), a peroxiredoxin 2 (PRDX2) pseudogene and a
             CpG island, complete sequence
          Length = 173987

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    aatttcttcttctcctcctcc 112
             |||||||||||||||||||||
Sbjct: 69788 aatttcttcttctcctcctcc 69808
to top
>gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2) gene, complete cds
          Length = 56373

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    caaatttcttcttctcctcct 110
             |||||||||||||||||||||
Sbjct: 55369 caaatttcttcttctcctcct 55389
to top
>gb|AY932044.1| HIV-1 isolate TZMDE717-1-5 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 657

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   caattgtctctcgtctctcctcctc 28
           |||||||||||||| ||||||||||
Sbjct: 608 caattgtctctcgtatctcctcctc 584
to top
>gb|AY931992.1| HIV-1 isolate TZMDE709-4-4 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   caattgtctctcgtctctcctcctc 28
           |||||||||||||| ||||||||||
Sbjct: 626 caattgtctctcgtatctcctcctc 602
to top
>gb|AY931578.1| HIV-1 isolate TZMDE645-4-5 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   caattgtctctcgtctctcctcctc 28
           |||||||||||||| ||||||||||
Sbjct: 611 caattgtctctcgtatctcctcctc 587
to top
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 86      gtttcaaatttcttcttctcctcct 110
               |||||||||| ||||||||||||||
Sbjct: 2062497 gtttcaaattccttcttctcctcct 2062473
to top
>gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complete sequence
          Length = 136197

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    ttcttcttctcctcctccata 115
             |||||||||||||||||||||
Sbjct: 40116 ttcttcttctcctcctccata 40136
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 94      tttcttcttctcctcctccat 114
               |||||||||||||||||||||
Sbjct: 8820148 tttcttcttctcctcctccat 8820128
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 92      aatttcttcttctcctcctcc 112
               |||||||||||||||||||||
Sbjct: 4236051 aatttcttcttctcctcctcc 4236071
to top
>gb|AY116033.1| HIV-1 isolate TZB0210 from Tanzania envelope glycoprotein (env)
           gene, partial cds
          Length = 648

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 4   caattgtctctcgtctctcctcctc 28
           |||||||||||||| ||||||||||
Sbjct: 599 caattgtctctcgtatctcctcctc 575
to top
>gb|AC152168.2| Mus musculus BAC clone RP23-96H18 from chromosome 8, complete sequence
          Length = 219434

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     tttcttcttctcctcctccat 114
              |||||||||||||||||||||
Sbjct: 199168 tttcttcttctcctcctccat 199188
to top
>gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, complete sequence
          Length = 201535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    caaatttcttcttctcctcct 110
             |||||||||||||||||||||
Sbjct: 13102 caaatttcttcttctcctcct 13122
to top
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0504A05
          Length = 148360

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    aatttcttcttctcctcctcc 112
             |||||||||||||||||||||
Sbjct: 52865 aatttcttcttctcctcctcc 52885
to top
>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0458G06
          Length = 139109

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    tttcttcttctcctcctccat 114
             |||||||||||||||||||||
Sbjct: 50248 tttcttcttctcctcctccat 50228
to top
>gb|AY955537.1| Homalonychus selenopoides voucher NMNH g403_MwkMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955536.1| Homalonychus selenopoides voucher NMNH g347_MwkMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955527.1| Homalonychus selenopoides voucher NMNH g151_KofaNWR 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955524.1| Homalonychus selenopoides voucher NMNH g150_HSRVPk 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955518.1| Homalonychus selenopoides voucher NMNH g359_EagMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955517.1| Homalonychus selenopoides voucher NMNH g346_EagMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|AY955516.1| Homalonychus selenopoides voucher NMNH g174_EagMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  aaatttcttcttctcctcctccata 115
           ||||||||||||||||| |||||||
Sbjct: 759 aaatttcttcttctcctactccata 783
to top
>gb|U21100.1|HIV1U21100 Human immunodeficiency virus type 1 isolate 93-8020 from England
            envelope glycoprotein (env) gene, partial cds
          Length = 1512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1412 caattgtctctcatctctcctcctc 1388
to top
>gb|U45449.1|EBU45449 Eimeria bovis heat shock protein 90 (hsp90) mRNA, partial cds
          Length = 1628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 88  ttcaaatttcttcttctcctcctcc 112
           ||||||||||||||| |||||||||
Sbjct: 809 ttcaaatttcttcttttcctcctcc 785
to top
>gb|U55216.1|ECU55216 Equus caballus Mx protein homolog mRNA, complete cds
          Length = 2608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 94   tttcttcttctcctcctccat 114
            |||||||||||||||||||||
Sbjct: 1772 tttcttcttctcctcctccat 1752
to top
>gb|AC125214.4| Mus musculus BAC clone RP23-84H24 from chromosome 3, complete sequence
          Length = 214943

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     aatttcttcttctcctcctcc 112
              |||||||||||||||||||||
Sbjct: 101350 aatttcttcttctcctcctcc 101330
to top
>gb|U23116.1|HIV1U23116 Human immunodeficiency virus type 1 isolate 93-08020,7 envelope
            glycoprotein (env) gene, partial cds
          Length = 1497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1400 caattgtctctcatctctcctcctc 1376
to top
>gb|U23115.1|HIV1U23115 Human immunodeficiency virus type 1 isolate 93-08020,43 envelope
            glycoprotein (env) gene, partial cds
          Length = 1473

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1376 caattgtctctcatctctcctcctc 1352
to top
>gb|U23114.1|HIV1U23114 Human immunodeficiency virus type 1 isolate 93-08020,4 envelope
            glycoprotein (env) gene, partial cds
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1364 caattgtctctcatctctcctcctc 1340
to top
>gb|U23113.1|HIV1U23113 Human immunodeficiency virus type 1 isolate 93-08020,19 envelope
            glycoprotein (env) gene, partial cds
          Length = 1497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1400 caattgtctctcatctctcctcctc 1376
to top
>gb|U23112.1|HIV1U23112 Human immunodeficiency virus type 1 isolate 93-08020,18 envelope
            glycoprotein (env) gene, partial cds
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 4    caattgtctctcgtctctcctcctc 28
            |||||||||||| ||||||||||||
Sbjct: 1364 caattgtctctcatctctcctcctc 1340
to top
>ref|NM_111533.2| Arabidopsis thaliana unknown protein AT3G06570 mRNA, complete cds
          Length = 1249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  atttcttcttctcctcctcc 112
           ||||||||||||||||||||
Sbjct: 349 atttcttcttctcctcctcc 330
to top
>ref|NM_105592.3| Arabidopsis thaliana RNA binding / nucleic acid binding / protein
           transporter AT1G69250 transcript variant AT1G69250.1
           mRNA, complete cds
          Length = 1647

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 51  ttcttcttctcctcctccat 70
to top
>ref|NM_202382.1| Arabidopsis thaliana RNA binding / protein transporter AT1G69250
           transcript variant AT1G69250.2 mRNA, complete cds
          Length = 1745

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 51  ttcttcttctcctcctccat 70
to top
>ref|NM_119619.2| Arabidopsis thaliana unknown protein AT4G34540 mRNA, complete cds
          Length = 2805

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ttcttcttctcctcctccat 114
            ||||||||||||||||||||
Sbjct: 1662 ttcttcttctcctcctccat 1643
to top
>ref|NM_113556.1| Arabidopsis thaliana signal transducer AT3G26490 mRNA, complete cds
          Length = 1767

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   ttcttcttctcctcctccat 114
            ||||||||||||||||||||
Sbjct: 1188 ttcttcttctcctcctccat 1207
to top
>gb|AC149321.2| Phakopsora pachyrhizi clone JGIAFNA-101K19, complete sequence
          Length = 40622

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 20740 ttcttcttctcctcctccat 20759
to top
>gb|DQ233494.1| Tamarix ramosissima clone T1B9 microsatellite sequence
          Length = 272

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 141 ttcttcttctcctcctccat 160
to top
>gb|AC147651.4| Homo sapiens BAC clone RP13-689E11 from 7, complete sequence
          Length = 162139

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 86982 atttcttcttctcctcctcc 86963
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 311    accatccgcaccgctgccgaccgctggc 338
              |||||||||| ||||| |||||||||||
Sbjct: 177349 accatccgcatcgctgacgaccgctggc 177322
to top
>gb|DQ410309.1| HIV-1 isolate H23v2ed4 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2574

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 1    aaacaattgtctctcgtctctcctcctc 28
            ||||||||||| ||| ||||||||||||
Sbjct: 1445 aaacaattgtccctcatctctcctcctc 1418
to top
>gb|AC140333.2| Mus musculus BAC clone RP24-326A21 from chromosome 10, complete sequence
          Length = 157738

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     atttcttcttctcctcctcc 112
              ||||||||||||||||||||
Sbjct: 123516 atttcttcttctcctcctcc 123535
to top
>gb|AC138894.2| Homo sapiens chromosome 16 clone RP11-435I10, complete sequence
          Length = 182289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tttcttcttctcctcctcca 113
             ||||||||||||||||||||
Sbjct: 59253 tttcttcttctcctcctcca 59272
to top
>gb|AC002425.1|HUAC002425 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-575C2, complete sequence
          Length = 113241

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 103417 tttcttcttctcctcctcca 103436
to top
>gb|AC002544.1|HUAC002544 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-761H5, complete sequence
          Length = 156641

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 123761 tttcttcttctcctcctcca 123742



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   tttcttcttctcctcctcca 113
            ||||||||||||||||||||
Sbjct: 9812 tttcttcttctcctcctcca 9793
to top
>ref|XM_805562.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511761.80) partial mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  cgaccgctggctgcagaagt 347
            ||||||||||||||||||||
Sbjct: 2725 cgaccgctggctgcagaagt 2706
to top
>gb|AC122381.2| Mus musculus BAC clone RP23-477C4 from chromosome 16, complete sequence
          Length = 188889

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 56958 atttcttcttctcctcctcc 56939
to top
>gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosome 10, complete sequence
          Length = 243006

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     atttcttcttctcctcctcc 112
              ||||||||||||||||||||
Sbjct: 223599 atttcttcttctcctcctcc 223580
to top
>emb|AL445255.8| Human DNA sequence from clone RP11-89A14 on chromosome 13, complete
             sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tttcttcttctcctcctcca 113
             ||||||||||||||||||||
Sbjct: 45486 tttcttcttctcctcctcca 45467
to top
>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor
          Length = 2674

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   ttcttcttctcctcctccat 114
            ||||||||||||||||||||
Sbjct: 2191 ttcttcttctcctcctccat 2210
to top
>gb|AY062994.1| Arabidopsis thaliana unknown protein (At3g06570) mRNA, complete cds
          Length = 1204

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  atttcttcttctcctcctcc 112
           ||||||||||||||||||||
Sbjct: 337 atttcttcttctcctcctcc 318
to top
>gb|AF370336.1| Arabidopsis thaliana unknown protein (At3g06570) mRNA, complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  atttcttcttctcctcctcc 112
           ||||||||||||||||||||
Sbjct: 349 atttcttcttctcctcctcc 330
to top
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 237   gcgccgacatggaggcgcaggcca 260
             |||||||| |||||||||||||||
Sbjct: 10016 gcgccgacctggaggcgcaggcca 9993
to top
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ttcttcttctcctcctccat 114
              ||||||||||||||||||||
Sbjct: 146224 ttcttcttctcctcctccat 146205
to top
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project)
          Length = 125502

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 36535 ttcttcttctcctcctccat 36516
to top
>emb|AJ401034.1|HIM401034 Human immunodeficiency virus type 1 proviral gp160 gene for envelope
            protein, strain A_97DC.KCC2
          Length = 2589

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    caattgtctctcgtctctcctcct 27
            |||||||||||| |||||||||||
Sbjct: 1430 caattgtctctcatctctcctcct 1407
to top
>emb|CR759941.1| Rat DNA sequence from clone RP32-551O16 on chromosome Y, complete
             sequence
          Length = 174940

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 48292 ttcttcttctcctcctccat 48311
to top
>gb|AY120741.1| Arabidopsis thaliana unknown protein (At4g34530:At4g34540) mRNA,
            complete cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ttcttcttctcctcctccat 114
            ||||||||||||||||||||
Sbjct: 1663 ttcttcttctcctcctccat 1644
to top
>gb|AC097497.2| Homo sapiens BAC clone RP11-324J17 from 4, complete sequence
          Length = 195069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 173444 tttcttcttctcctcctcca 173463
to top
>gb|AC026411.7| Homo sapiens chromosome 16 clone CTC-543N4, complete sequence
          Length = 137371

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 126627 tttcttcttctcctcctcca 126646
to top
>gb|AC008956.8| Homo sapiens chromosome 16 clone CTD-2343L5, complete sequence
          Length = 110129

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tttcttcttctcctcctcca 113
             ||||||||||||||||||||
Sbjct: 58987 tttcttcttctcctcctcca 58968
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 235     cggcgccgacatggaggcgcaggc 258
               |||||||||||||| |||||||||
Sbjct: 5148695 cggcgccgacatggtggcgcaggc 5148672
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 82       ctccgtttcaaatttcttct 101
                ||||||||||||||||||||
Sbjct: 26547758 ctccgtttcaaatttcttct 26547777
to top
>gb|AC084213.19|AC084213 Mus musculus 1 BAC RP23-470F8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 109501

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 67254 atttcttcttctcctcctcc 67273
to top
>emb|BX814173.1|CNS0AC9C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1571

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 20  ttcttcttctcctcctccat 39
to top
>emb|BX815179.1|CNS0ABFM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS3ZE04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1576

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 2   ttcttcttctcctcctccat 21
to top
>emb|BX815210.1|CNS0AAGF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS42ZA09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1572

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ttcttcttctcctcctccat 114
           ||||||||||||||||||||
Sbjct: 2   ttcttcttctcctcctccat 21
to top
>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence
          Length = 200812

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 132843 tttcttcttctcctcctcca 132862
to top
>gb|AC020765.8| Homo sapiens chromosome 16 clone RP11-666O2, complete sequence
          Length = 195588

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   tttcttcttctcctcctcca 113
            ||||||||||||||||||||
Sbjct: 9198 tttcttcttctcctcctcca 9179
to top
>gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete
             sequence
          Length = 93802

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 63963 ttcttcttctcctcctccat 63944
to top
>gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete
             sequence
          Length = 94704

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 38162 atttcttcttctcctcctcc 38143
to top
>gb|AC008262.4|AC008262 Genomic sequence for Arabidopsis thaliana BAC F4N2 from chromosome I,
             complete sequence
          Length = 99698

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 84800 ttcttcttctcctcctccat 84819
to top
>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence
          Length = 171940

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     tttcttcttctcctcctcca 113
              ||||||||||||||||||||
Sbjct: 135233 tttcttcttctcctcctcca 135214
to top
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ctccgtttcaaatttcttct 101
             ||||||||||||||||||||
Sbjct: 96625 ctccgtttcaaatttcttct 96644
to top
>dbj|AP001298.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F20C19
          Length = 71184

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 69292 ttcttcttctcctcctccat 69311
to top
>emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chromosome 12, complete
             sequence
          Length = 183966

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 81044 atttcttcttctcctcctcc 81063
to top
>emb|AL359400.4|CNS05TEW Human chromosome 14 DNA sequence BAC R-114L12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     atttcttcttctcctcctcc 112
              ||||||||||||||||||||
Sbjct: 164921 atttcttcttctcctcctcc 164940
to top
>gb|AC090052.15| Homo sapiens 12 BAC RP11-295G12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 150200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     atttcttcttctcctcctcc 112
              ||||||||||||||||||||
Sbjct: 132178 atttcttcttctcctcctcc 132197
to top
>gb|AY955542.1| Homalonychus selenopoides voucher NMNH g21_Tacna 16S ribosomal RNA
           gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  aaatttcttcttctcctcctccat 114
           ||||||||||||||||| ||||||
Sbjct: 759 aaatttcttcttctcctactccat 782
to top
>gb|AY955532.1| Homalonychus selenopoides voucher NMNH g190_MarMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  aaatttcttcttctcctcctccat 114
           ||||||||||||||||| ||||||
Sbjct: 759 aaatttcttcttctcctactccat 782
to top
>gb|AY955531.1| Homalonychus selenopoides voucher NMNH g141_MarMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  aaatttcttcttctcctcctccat 114
           ||||||||||||||||| ||||||
Sbjct: 759 aaatttcttcttctcctactccat 782
to top
>gb|AY955530.1| Homalonychus selenopoides voucher NMNH g142_MarMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  aaatttcttcttctcctcctccat 114
           ||||||||||||||||| ||||||
Sbjct: 759 aaatttcttcttctcctactccat 782
to top
>gb|AY955529.1| Homalonychus selenopoides voucher NMNH g15_MarMtns 16S ribosomal
           RNA gene, partial sequence; tRNA-Leu gene, complete
           sequence; and NADH dehydrogenase subunit 1 gene, partial
           cds; mitochondrial
          Length = 930

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  aaatttcttcttctcctcctccat 114
           ||||||||||||||||| ||||||
Sbjct: 759 aaatttcttcttctcctactccat 782
to top
>gb|AC169080.4| Erinaceus europaeus, clone XX-29441557E23, complete sequence
          Length = 33903

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tttcttcttctcctcctcca 113
             ||||||||||||||||||||
Sbjct: 24527 tttcttcttctcctcctcca 24546
to top
>emb|AM000053.1| Human immunodeficiency virus type 1 complete genome, subtype A4,
            isolate 97CD.KCC2
          Length = 9740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    caattgtctctcgtctctcctcct 27
            |||||||||||| |||||||||||
Sbjct: 7656 caattgtctctcatctctcctcct 7633
to top
>emb|AL049734.11|HSJ154J13 Human DNA sequence from clone RP1-154J13 on chromosome Xq26.1-26.3
            Contains a seven transmembrane helix receptor pseudogene,
            a pseudogene similar to part of seven transmembrane helix
            receptor, a pseudogene similar to part of
            PYRIN-containing Apaf1-like protein 3 (PYPAF3) and the
            gene for a novel protein similar to seven transmembrane
            helix receptor (FLJ31393), complete sequence
          Length = 126766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   atttcttcttctcctcctcc 112
            ||||||||||||||||||||
Sbjct: 3430 atttcttcttctcctcctcc 3449
to top
>gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complete sequence
          Length = 138380

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 87855 atttcttcttctcctcctcc 87836
to top
>emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete
             sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 95843 ttcttcttctcctcctccat 95862
to top
>emb|AL929511.11| Mouse DNA sequence from clone RP23-387F22 on chromosome 4, complete
             sequence
          Length = 152424

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    atttcttcttctcctcctcc 112
             ||||||||||||||||||||
Sbjct: 62161 atttcttcttctcctcctcc 62142
to top
>emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-159D23 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 147454

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   atttcttcttctcctcctcc 112
            ||||||||||||||||||||
Sbjct: 5944 atttcttcttctcctcctcc 5963
to top
>emb|AL929506.8| Mouse DNA sequence from clone RP23-223I8 on chromosome 4, complete
             sequence
          Length = 63478

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 40431 ttcttcttctcctcctccat 40412
to top
>emb|AL672267.10| Mouse DNA sequence from clone RP23-377K9 on chromosome X, complete
             sequence
          Length = 169331

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttcttcttctcctcctccat 114
             ||||||||||||||||||||
Sbjct: 59057 ttcttcttctcctcctccat 59038
to top
>emb|AL772402.5| Mouse DNA sequence from clone RP23-65J9 on chromosome 11, complete
              sequence
          Length = 242502

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     atttcttcttctcctcctcc 112
              ||||||||||||||||||||
Sbjct: 138043 atttcttcttctcctcctcc 138062


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,588,345
Number of Sequences: 3902068
Number of extensions: 3588345
Number of successful extensions: 101813
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101172
Number of HSP's gapped (non-prelim): 639
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top