>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
 Frame = -1

Query: 339  IEAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERASKLS-----GQLSSAQ---P 184
            IE  +R  +QKA+ E+  + +E+ KER+R+    R  ERA+K S     G+LS  Q   P
Sbjct: 1159 IEKAKREAEQKAR-EEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQLSGP 1217

Query: 183  SHTR 172
             H R
Sbjct: 1218 GHMR 1221

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
 Frame = -1

Query: 339  IEAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERASKLS-----GQLSSAQ---P 184
            IE  +R  +QKA+ E+  + +E+ KER+R+    R  ERA+K S     G+LS  Q   P
Sbjct: 1167 IEKAKREAEQKAR-EEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQLSGP 1225

Query: 183  SHTR 172
             H R
Sbjct: 1226 GHMR 1229

>RBP1_DROME (Q02427) RNA-binding protein 1|
          Length = 144

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -1

Query: 387 ALRNQERTHCNGDSIVIEAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERASKLS 208
           A R  + T C G  I +E      + + +GE G   R  G  R R T + R T  A+   
Sbjct: 63  ATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRS-GSGRYRITPSARTTSTATSSF 121

Query: 207 GQLSSAQPSHTRQPR 163
             +++ Q   + QP+
Sbjct: 122 YNINNLQQQPSSQPQ 136

>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 417 GEGETRQGILALRNQERTHCNGDSIVIEAGERLGKQKAKGEQGHKHRERGKERQRQTVTL 238
           GE E ++G    R  ER H  G     + G     ++ +G +  +  ER +ERQR+    
Sbjct: 66  GEAERQRGRERGREVER-HRRGREAERQRGREREAERQRGREAEREAERQRERQRERQRG 124

Query: 237 RVTER 223
           R  ER
Sbjct: 125 REAER 129



 Score = 30.0 bits (66), Expect = 2.3
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = -1

Query: 420 GGEGETRQGILALRNQERTHCNGDSIVIEAGERLGKQKAKGEQGHKHRERGKERQRQTVT 241
           G E E ++G    R  ER          EA  + G+++ +G +G   R+RG+ER R+   
Sbjct: 34  GREAERQRGRERGREAER----------EAERQRGRERQRG-RGEAERQRGRERGREVER 82

Query: 240 LRVTERASKLSGQLSSAQPSHTRQ 169
            R    A +  G+   A+    R+
Sbjct: 83  HRRGREAERQRGREREAERQRGRE 106



 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 414 EGETRQGILALRNQERTHCNGDSIVIEAGERLGKQKAKGEQGHKHRERGKERQR 253
           E E ++G  A R +ER          EA  + G+++ +  +    R+RG+ERQR
Sbjct: 16  ESERQRGREAERQRERQRGR------EAERQRGRERGREAEREAERQRGRERQR 63

>LA_BOVIN (P10881) Lupus La protein homolog (La ribonucleoprotein) (La|
           autoantigen homolog)
          Length = 404

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -3

Query: 382 EESGANPLQRRLHRY*GRGEVGKAKGQRRARTQTQREGKR-KAETDSDTPGDGASKQALR 206
           ++   N  + +  R+ G+G+  KA     A+ + Q +GK+ K ++D +   +GAS+   R
Sbjct: 322 QQESLNKWKSKGRRFKGKGKGNKAAQAGSAKGKVQFQGKKTKFDSDDERDENGASRAVKR 381

Query: 205 SAQLSSAQP 179
           + + +  +P
Sbjct: 382 AREETDKEP 390

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -1

Query: 339  IEAGERLGKQKAKGE-----QGHKHRERGKERQRQTVTLRVTERASKLSGQLSSAQ---P 184
            IE  +R  +QKA+ E     +  K RER +ER+R+         +S   G+LS  Q   P
Sbjct: 1159 IEKAKREAEQKAREEREREKEKEKEREREREREREAERAAQKASSSAHEGRLSDPQLSGP 1218

Query: 183  SHTR 172
             H R
Sbjct: 1219 GHMR 1222

>L100_ADE41 (P11824) Late 100 kDa protein|
          Length = 777

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 334 GRGEVGKAK----GQ----RRARTQTQREGKRKAETDSDTPGDGASKQALRSAQLSSAQP 179
           G GE+GK++    GQ    R  R   QR G     T S+   DG S+    +A+L  +QP
Sbjct: 718 GNGELGKSRRGAGGQTPQGRGGRNHRQRRGTVFQRTRSEPASDGESRTVPAAARLVESQP 777

>AROC_CHLTE (Q8KCI9) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 397

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 339 IEAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERASKLSGQLSSAQPSHTR 172
           +E G      +  G Q H     G E+  +    R T RA  + G +SS QP H R
Sbjct: 262 VEIGPAFDNARKPGSQVHDELFAGGEKGLR----RETNRAGGIEGSMSSGQPIHIR 313

>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1181

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = -3

Query: 412 RRDETGDFG---------LEESGANPLQRRLHRY*GRGEVGKAKGQRRARTQTQREGKRK 260
           R D TG+ G          +E G    +R+     G+ E  + KG+ +   +T+ EGK +
Sbjct: 719 RGDMTGEEGERETEAEGKKDEEGETEAERKED---GQEEETETKGKEKQEGETESEGKDE 775

Query: 259 AETDSDTPGDGASKQALRSAQLSSAQPHQATEA 161
            E +++  G  A  +    A+    +    TEA
Sbjct: 776 QEGETEAEGKEADHEGETEAEGKEVEHEGETEA 808

>CF139_MOUSE (Q9CPQ5) Protein C6orf139 homolog|
          Length = 269

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 319 GKAKGQRRARTQTQREGKRKAETDSDTP----GDGASKQALRSAQLSSAQPHQAT 167
           GKA+  R+   Q +R  K++A  ++D P    G+ A +    +  LSS    QAT
Sbjct: 5   GKARASRKKPQQVKRSLKQRANKEADLPENEVGNTAKRNRSHAKHLSSKVTGQAT 59

>HSP1_OCTVU (P83214) Sperm protamine P1 (Po1) [Contains: Sperm protamine P2|
           (Po2) (Main protamine)]
          Length = 56

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 358 QRRLHRY*GRGEVGKAKGQRRARTQTQREGKRK 260
           +RR  R   RG  G+ +G+RR R + +R G+R+
Sbjct: 13  RRRRRRRRSRGRRGRRRGRRRGRRRGRRRGRRR 45

>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin|
           cytoplasmic domain-associated protein 3) (SEMACAP3
           protein)
          Length = 1062

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 16  SPCPPALCPFHLPKQHPS 69
           SP PP L P+ LP++HPS
Sbjct: 374 SPSPPVLGPYLLPEEHPS 391

>R1_ARATH (Q9SAC6) Alpha-glucan water dikinase, chloroplast precursor (EC|
           2.7.9.4) (Starch-related R1 protein) (Starch excess
           protein 1)
          Length = 1399

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 365 PTATATPSLLRPGRGWESKRPKESKDTNTERGEKKGRD 252
           P +  T S  R  +   SK+P+  K+ NT++ ++KGRD
Sbjct: 275 PKSNGTSSSGREEKKKVSKQPERKKNYNTDKIQRKGRD 312

>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of|
           Numb-protein X 3) (Semaphorin cytoplasmic
           domain-associated protein 3) (SEMACAP3 protein)
          Length = 1066

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 16  SPCPPALCPFHLPKQHPS 69
           SP PP L P+ LP++HPS
Sbjct: 375 SPSPPVLDPYLLPEEHPS 392

>MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
           (CDC42-binding protein kinase gamma) (Myotonic dystrophy
           kinase-related CDC42-binding kinase gamma) (Myotonic
           dystrophy protein kinase-like alpha) (MRCK gamma)
           (DMPK-like gamma
          Length = 1551

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 297 EQGHKHRERGKER---QRQTVTLRVTERASKLSGQLSSAQPSHTR 172
           EQ H HR  GKE    Q Q    R++    +L  +L+  Q S  R
Sbjct: 621 EQAHSHRRSGKEEALCQLQEENRRLSREQERLEAELAQEQESKQR 665

>SDC1_MOUSE (P18828) Syndecan-1 precursor (SYND1)|
          Length = 311

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
 Frame = -1

Query: 342 VIEAGERLGKQK----AKGEQGHKHRERGKE---RQRQTVTLRVTERASKLSGQLSSAQP 184
           V+ AGE+  + +     + E G   R++ KE   R R+TV L +T+RAS +  ++++AQ 
Sbjct: 91  VLPAGEKPEEGEPVLHVEAEPGFTARDKEKEVTTRPRETVQLPITQRASTV--RVTTAQA 148

Query: 183 SHTRQP 166
           + T  P
Sbjct: 149 AVTSHP 154

>Y4VI_RHISN (Q53217) Putative short-chain type dehydrogenase/reductase y4vI (EC|
           1.-.-.-)
          Length = 548

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 357 NGDSIVIEAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERASKLSGQL 199
           NGD++VI  G+     K  G  G KH  R  +R  +T  + + E   +  G L
Sbjct: 300 NGDTVVIADGDGEEAVKLAGLLGDKHLSRRVDRTVETEVVSLFEELRERFGHL 352

>PHF14_HUMAN (O94880) PHD finger protein 14|
          Length = 888

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 336 EAGERLGKQKAKGEQGHKHRERGKERQRQTVTLRVTERAS 217
           E GER  K++ K ++  K +E+ KER+++     V+E  +
Sbjct: 106 ENGERPRKKREKEKEKEKEKEKEKEREKEKEKATVSENVA 145

>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2327

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -3

Query: 382  EESGANPLQRRLHRY*------GRGEVGKAKGQRRARTQTQREGKRKAETDSD 242
            E +   P + R HR+       G   V   KG+RRAR +  R G R+AE + +
Sbjct: 918  EATEREPRRHRAHRHAQDSSKEGTAPVLVPKGERRARHRGPRTGPREAENNEE 970

>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin|
           cytoplasmic domain-associated protein 3) (SEMACAP3
           protein)
          Length = 1063

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 16  SPCPPALCPFHLPKQHPS 69
           SP PP L P+ LP++HP+
Sbjct: 375 SPSPPVLDPYLLPEEHPA 392

>HSP3_MURBR (P83213) Sperm protamine P3|
          Length = 54

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 415 RRRDETGDFGLEESGANPLQRRLHRY*GRGEVGKAKGQRRARTQTQREGKRK 260
           RRR   G  G ++ G    +RR      RG  GK KG+++ + + +R GKR+
Sbjct: 3   RRRRGKGKGGKKKKGKK--RRR------RGRKGKGKGKKKGKRKGKRGGKRR 46

>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 42)
            (Ubiquitin-specific-processing protease 42)
            (Deubiquitinating enzyme 42)
          Length = 1325

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 417  GEGETRQGILALRNQERTHCNGDSIVIEAGERLGKQKAKGEQGHKHRER---GKERQRQ 250
            G    ++ I +LR  +R H         +GE   + ++K E GH+HR R    +ER RQ
Sbjct: 934  GPSPAKEKIGSLRKVDRGHYRSRRERSSSGEPARESRSKTE-GHRHRRRRTCPRERDRQ 991


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,615,946
Number of Sequences: 219361
Number of extensions: 728798
Number of successful extensions: 3456
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3395
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)