ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41d11 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAXMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ +++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAXMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ +++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAXMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV +K EA+K+ +++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +1 Query: 127 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAXMLLLNGETLPTLFITV 291 PC +++ ++K DLE D K+E +KR LLLNGE P L +T+ Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTI 60
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 34.7 bits (78), Expect = 0.064 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 130 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAXMLLLNGETLPTLFITV 291 C LV D A + +K LE + K+ AMK +++NG++LP++ + V Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHV 56
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -3 Query: 183 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 10 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 75 CGVSVVGSAAEVDRDLGAGRGGEWL 1 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 4 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 99 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -3 Query: 117 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 10 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 293 TTVMKSVGRVSPLRRSMXARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 129 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 128 GLSMAPDLP 102 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -1 Query: 293 TTVMKSVGRVSPLRRSMXARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 129 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 128 GLSMAPDLP 102 GL PD P Sbjct: 314 GLHSNPDSP 322
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 Query: 5 HSPPLPAPRSRSTSAADPTTDTPHAVALR 91 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -1 Query: 218 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 81 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 2 NHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 118 N P PR RS ++ ++ +P A R C A PAP Sbjct: 11 NAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +1 Query: 49 RRSNHRYPTRRRPPARVHGRSGA 117 RR ++R P RRRP R H RS A Sbjct: 409 RRDSYRDPYRRRPGDRSHSRSPA 431
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +1 Query: 10 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHGRSGAMD 123 PPS G +SIH R R +HR P R R HG + D Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----VRFHGGAALGD 597 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,671,933 Number of Sequences: 219361 Number of extensions: 545343 Number of successful extensions: 2560 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2442 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2557 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
