ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468232.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-05
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
3dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
4dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
5dbj|AK072317.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
6gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosom... 42 1.1
7gb|AC122001.2| Mus musculus BAC clone RP24-330I1 from chromosome... 42 1.1
8emb|AL359921.13| Human DNA sequence from clone RP11-385F5 on chr... 42 1.1
9emb|AL162591.16| Human DNA sequence from clone RP11-350G8 on chr... 42 1.1
10emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chrom... 42 1.1
11gb|DQ399904.1| Nocardiopsis sp. 90127 plasmid pSQ10, complete se... 42 1.1
12emb|BX664604.6| Zebrafish DNA sequence from clone CH211-253F20 i... 42 1.1
13gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.1
14emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chr... 42 1.1
15ref|NM_180247.1| Arabidopsis thaliana unknown protein AT3G13460 ... 40 4.3
16ref|NM_001035613.1| Arabidopsis thaliana unknown protein AT3G134... 40 4.3
17ref|NM_112192.2| Arabidopsis thaliana unknown protein AT3G13460 ... 40 4.3
18ref|NM_001035612.1| Arabidopsis thaliana unknown protein AT3G134... 40 4.3
19ref|XM_479829.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
20ref|XM_507104.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.3
21ref|NM_185176.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
22gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delt... 40 4.3
23gb|AY894118.1| Arabidopsis thaliana clone ECT2 unknown mRNA 40 4.3
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.3
25gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome... 40 4.3
26gb|AC121920.3| Mus musculus BAC clone RP24-196F6 from chromosome... 40 4.3
27gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CI... 40 4.3
28gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, comple... 40 4.3
29gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, co... 40 4.3
30gb|AC113270.8| Mus musculus chromosome 7, clone RP23-375O10, com... 40 4.3
31emb|AL589649.4| Human DNA sequence from clone RP11-264J13 on chr... 40 4.3
32emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on ch... 40 4.3
33emb|AL355598.26| Human DNA sequence from clone RP11-435O11 on ch... 40 4.3
34emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on ch... 40 4.3
35emb|AL591982.1| Listeria monocytogenes strain EGD, complete geno... 40 4.3
36emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BA... 40 4.3
37emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 40 4.3
38gb|AY123992.1| Arabidopsis thaliana AT3g13460/MRP15_10 mRNA, com... 40 4.3
39dbj|AB110181.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 4.3
40gb|DQ360379.1| Bradyrhizobium sp. Dp6.5 alpha-ketoglutarate-depe... 40 4.3
41gb|DQ360376.1| Bradyrhizobium sp. Lppb2 alpha-ketoglutarate-depe... 40 4.3
42gb|DQ360375.1| Bradyrhizobium sp. DcE2.8 alpha-ketoglutarate-dep... 40 4.3
43gb|DQ360374.1| Bradyrhizobium sp. ApT12 alpha-ketoglutarate-depe... 40 4.3
44gb|DQ360373.1| Bradyrhizobium sp. ApB16 alpha-ketoglutarate-depe... 40 4.3
45gb|AC010601.6| Homo sapiens chromosome 16 clone CTA-481E9, compl... 40 4.3
46dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
48gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.3
49gb|AF238238.1|AF238238 Arabidopsis thaliana branched-chain alpha... 40 4.3
50gb|AC025226.4|AC025226 Homo sapiens BAC clone RP11-57J19 from Y,... 40 4.3
51gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 40 4.3
52gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 40 4.3
53gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, par... 40 4.3
54ref|NM_182615.1| Homo sapiens hypothetical protein MGC40069 (MGC... 40 4.3
55dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
56dbj|AB119231.1| Bradyrhizobium sp. BDV5329 tfdA-like gene for hy... 40 4.3
57dbj|AB119229.1| Bradyrhizobium sp. ApB16 tfdA-like gene for hypo... 40 4.3
58dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.3
59dbj|AK105776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
60dbj|AK104952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
61emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal region;... 40 4.3
62dbj|AK069887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
63dbj|AK068201.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
64gb|BC032242.1| Homo sapiens hypothetical protein MGC40069, mRNA ... 40 4.3
65emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chr... 40 4.3
66gb|AC121355.9| Mus musculus chromosome 15, clone RP24-434C10, co... 40 4.3
67emb|CT574593.2| Pan troglodytes chromosome X clone RP43-059H19 m... 40 4.3
68gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.3
69gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.3
70ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 4.3
71gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 4.3
72emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chr... 40 4.3
73emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chr... 40 4.3 
>ref|XM_468232.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2701

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 286 gaggagcgcctcgacgtgctcaccgccgccggcgacaaga 325
           ||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 83  gaggagcgcctcgacgtcctcaccgccggcggcgagaaga 122
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 286      gaggagcgcctcgacgtgctcaccgccgccggcgacaaga 325
                ||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 33728638 gaggagcgcctcgacgtcctcaccgccggcggcgagaaga 33728677
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 286   gaggagcgcctcgacgtgctcaccgccgccggcgacaaga 325
             ||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 97045 gaggagcgcctcgacgtcctcaccgccggcggcgagaaga 97084
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 286   gaggagcgcctcgacgtgctcaccgccgccggcgacaaga 325
             ||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 59505 gaggagcgcctcgacgtcctcaccgccggcggcgagaaga 59544
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>dbj|AK072317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026G15, full
           insert sequence
          Length = 2701

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 286 gaggagcgcctcgacgtgctcaccgccgccggcgacaaga 325
           ||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 83  gaggagcgcctcgacgtcctcaccgccggcggcgagaaga 122
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>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete
            sequence
          Length = 152811

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  ggagcagagttttcttttctt 125
            |||||||||||||||||||||
Sbjct: 2815 ggagcagagttttcttttctt 2795
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>gb|AC122001.2| Mus musculus BAC clone RP24-330I1 from chromosome 7, complete sequence
          Length = 155051

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   ggagcagagttttcttttctt 125
             |||||||||||||||||||||
Sbjct: 36030 ggagcagagttttcttttctt 36050
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>emb|AL359921.13| Human DNA sequence from clone RP11-385F5 on chromosome 1 Contains a novel
              gene, the LGALS8 gene for lectin, galactoside-binding,
              soluble, 8 (galectin 8), the gene for protein BAP28
              (FLJ10359), a novel gene, the 5' end of the ACTN2 gene for
              actinin, alpha 2 and three CpG islands, complete sequence
          Length = 213757

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 109    cagagttttcttttcttttcc 129
              |||||||||||||||||||||
Sbjct: 136225 cagagttttcttttcttttcc 136245
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>emb|AL162591.16| Human DNA sequence from clone RP11-350G8 on chromosome 1 Contains the
             3' end of the AQP10 gene for aquaporin 10, the ATP8B2 gene
             for ATPase, Class I, type 8B, member 2, a mitochondrial
             ribosomal protein S33 (MRPS33) pseudogene, a novel gene,
             the IL6R gene for interleukin 6 receptor, a proteasome
             (prosome, macropain) 26S subunit, non-ATPase, 8 (PSMD8)
             pseduogene, a novel gene (LOC126669), the 5' end of a
             novel gene (DKFZp434M202) and a CpG island, complete
             sequence
          Length = 201167

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   gcagagttttcttttcttttc 128
             |||||||||||||||||||||
Sbjct: 45952 gcagagttttcttttcttttc 45972
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>emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, the gene for ileal
              fatty acid binding protein 6 (gastrotropin) (Fabp6), two
              novel genes, the gene for a novel protein (1810033K05Rik),
              a mitochondrial ribosomal protein 63 (Mrp63) pseudogene,
              the gene for step II splicing factor SLU7 (Slu7-pending),
              the Pttg1 gene for pituitary tumor-transforming 1 and a CpG
              island, complete sequence
          Length = 232609

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    gcagagttttcttttcttttc 128
              |||||||||||||||||||||
Sbjct: 110448 gcagagttttcttttcttttc 110428
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>gb|DQ399904.1| Nocardiopsis sp. 90127 plasmid pSQ10, complete sequence
          Length = 18219

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 286   gaggagcgcctcgacgtgctcaccg 310
             ||||||||||| |||||||||||||
Sbjct: 15501 gaggagcgcctggacgtgctcaccg 15477
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>emb|BX664604.6| Zebrafish DNA sequence from clone CH211-253F20 in linkage group 7,
             complete sequence
          Length = 150508

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     ttcatccaaacaagcaaagta 23
             |||||||||||||||||||||
Sbjct: 72796 ttcatccaaacaagcaaagta 72776
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 292     cgcctcgacgtgctcaccgccgccg 316
               ||||||||||||||||||| |||||
Sbjct: 1628928 cgcctcgacgtgctcaccggcgccg 1628952
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>emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chromosome 2, complete
             sequence
          Length = 210427

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   gagcagagttttcttttcttt 126
             |||||||||||||||||||||
Sbjct: 47777 gagcagagttttcttttcttt 47797
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>ref|NM_180247.1| Arabidopsis thaliana unknown protein AT3G13460 transcript variant
            AT3G13460.2 mRNA, complete cds
          Length = 2812

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2639 gcagagttttcttttctttt 2658
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>ref|NM_001035613.1| Arabidopsis thaliana unknown protein AT3G13460 transcript variant
            AT3G13460.4 mRNA, complete cds
          Length = 2818

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2645 gcagagttttcttttctttt 2664
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>ref|NM_112192.2| Arabidopsis thaliana unknown protein AT3G13460 transcript variant
            AT3G13460.1 mRNA, complete cds
          Length = 2821

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2648 gcagagttttcttttctttt 2667
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>ref|NM_001035612.1| Arabidopsis thaliana unknown protein AT3G13460 transcript variant
            AT3G13460.3 mRNA, complete cds
          Length = 2847

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2674 gcagagttttcttttctttt 2693
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>ref|XM_479829.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1370

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 296 tcgacgtgctcaccgccgccggcg 319
           ||||||||||| ||||||||||||
Sbjct: 364 tcgacgtgctcgccgccgccggcg 387
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>ref|XM_507104.1| PREDICTED Oryza sativa (japonica cultivar-group), B1203H11.11 mRNA
          Length = 1406

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 296 tcgacgtgctcaccgccgccggcg 319
           ||||||||||| ||||||||||||
Sbjct: 363 tcgacgtgctcgccgccgccggcg 386
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>ref|NM_185176.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 834

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tgctcaccgccgccggcgac 321
           ||||||||||||||||||||
Sbjct: 53  tgctcaccgccgccggcgac 72
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>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to
              501670 (section 2 of 5) of the Complete Nucleotide Sequence
          Length = 251199

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agcagagttttcttttcttt 126
              ||||||||||||||||||||
Sbjct: 110579 agcagagttttcttttcttt 110598
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>gb|AY894118.1| Arabidopsis thaliana clone ECT2 unknown mRNA
          Length = 2490

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2366 gcagagttttcttttctttt 2385
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      tgctcaccgccgccggcgac 321
                ||||||||||||||||||||
Sbjct: 35468307 tgctcaccgccgccggcgac 35468288
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>gb|AC134582.5| Mus musculus BAC clone RP24-90M17 from chromosome 15, complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    cacaacccaccccagaaaac 209
              ||||||||||||||||||||
Sbjct: 147750 cacaacccaccccagaaaac 147731
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>gb|AC121920.3| Mus musculus BAC clone RP24-196F6 from chromosome 7, complete sequence
          Length = 159469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    agagttttcttttcttttcc 129
              ||||||||||||||||||||
Sbjct: 145403 agagttttcttttcttttcc 145422
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>gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-319E8, complete
             sequence
          Length = 153773

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   agagttttcttttcttttcc 129
             ||||||||||||||||||||
Sbjct: 15343 agagttttcttttcttttcc 15362
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>gb|AC114823.4| Mus musculus BAC clone RP23-209L10 from 2, complete sequence
          Length = 170884

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cagagttttcttttcttttc 128
             ||||||||||||||||||||
Sbjct: 88580 cagagttttcttttcttttc 88599
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>gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, complete sequence
          Length = 190577

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cagagttttcttttcttttc 128
              ||||||||||||||||||||
Sbjct: 107811 cagagttttcttttcttttc 107792
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>gb|AC113270.8| Mus musculus chromosome 7, clone RP23-375O10, complete sequence
          Length = 175280

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   agagttttcttttcttttcc 129
             ||||||||||||||||||||
Sbjct: 25371 agagttttcttttcttttcc 25390
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>emb|AL589649.4| Human DNA sequence from clone RP11-264J13 on chromosome 6, complete
             sequence
          Length = 44768

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   cagagttttcttttcttttc 128
             ||||||||||||||||||||
Sbjct: 12918 cagagttttcttttcttttc 12899
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>emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on chromosome 10 Contains the
              5' end of the CACNB2 gene for calcium channel
              voltage-dependent beta 2 subunit, the 3' end of a novel
              gene (FLJ30499), the 5' end of a novel gene (FLJ30450) and
              CpG island, complete sequence
          Length = 154244

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    ggagcagagttttcttttcttttc 128
              |||| |||||||||||||||||||
Sbjct: 149621 ggaggagagttttcttttcttttc 149598
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>emb|AL355598.26| Human DNA sequence from clone RP11-435O11 on chromosome 10 Contains the
              EIF3S10 gene for eukaryotic translation initiation factor
              3, subunit 10 theta, 150/170kDa, the gene for a novel
              protein similar to uncharacterized hypothalamus protein
              HT011, the 3' end of a novel gene and three CpG islands,
              complete sequence
          Length = 128228

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    gcagagttttcttttctttt 127
              ||||||||||||||||||||
Sbjct: 127730 gcagagttttcttttctttt 127749
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>emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on chromosome 10 Contains
            the 5' end of a novel gene, the PRDX3 gene for
            peroxiredoxin 3 (AOP1, MER5, AOP-1, SP-22), the 5' end of
            the GPRK5 gene for G protein-coupled receptor kinase 5
            (GRK5), a novel gene and four CpG islands, complete
            sequence
          Length = 168528

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 1502 gcagagttttcttttctttt 1521
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>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12
          Length = 295050

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aaacaagcaaagtattttct 29
              ||||||||||||||||||||
Sbjct: 115974 aaacaagcaaagtattttct 115955
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>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project)
          Length = 108459

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tcatccctcacaagtcacaa 194
             ||||||||||||||||||||
Sbjct: 87416 tcatccctcacaagtcacaa 87397
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>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tcatccctcacaagtcacaa 194
              ||||||||||||||||||||
Sbjct: 104073 tcatccctcacaagtcacaa 104054
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>gb|AY123992.1| Arabidopsis thaliana AT3g13460/MRP15_10 mRNA, complete cds
          Length = 2736

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcagagttttcttttctttt 127
            ||||||||||||||||||||
Sbjct: 2588 gcagagttttcttttctttt 2607
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>dbj|AB110181.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, partial cds, clone: 13YPR054
          Length = 1092

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tgctcaccgccgccggcgac 321
           ||||||||||||||||||||
Sbjct: 64  tgctcaccgccgccggcgac 83
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>gb|DQ360379.1| Bradyrhizobium sp. Dp6.5 alpha-ketoglutarate-dependent
           2,4-dichlorophenoxyacetate dioxygenase (tfdA) gene,
           partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 214 caccgacgacgaaaagcaga 233
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>gb|DQ360376.1| Bradyrhizobium sp. Lppb2 alpha-ketoglutarate-dependent
           2,4-dichlorophenoxyacetate dioxygenase (tfdA) gene,
           partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 214 caccgacgacgaaaagcaga 233
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>gb|DQ360375.1| Bradyrhizobium sp. DcE2.8 alpha-ketoglutarate-dependent
           2,4-dichlorophenoxyacetate dioxygenase (tfdA) gene,
           partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 214 caccgacgacgaaaagcaga 233
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>gb|DQ360374.1| Bradyrhizobium sp. ApT12 alpha-ketoglutarate-dependent
           2,4-dichlorophenoxyacetate dioxygenase (tfdA) gene,
           partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 214 caccgacgacgaaaagcaga 233
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>gb|DQ360373.1| Bradyrhizobium sp. ApB16 alpha-ketoglutarate-dependent
           2,4-dichlorophenoxyacetate dioxygenase (tfdA) gene,
           partial cds
          Length = 460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 214 caccgacgacgaaaagcaga 233
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>gb|AC010601.6| Homo sapiens chromosome 16 clone CTA-481E9, complete sequence
          Length = 110222

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   agagttttcttttcttttcc 129
             ||||||||||||||||||||
Sbjct: 30400 agagttttcttttcttttcc 30381
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 296     tcgacgtgctcaccgccgccggcg 319
               ||||||||||| ||||||||||||
Sbjct: 1122582 tcgacgtgctcgccgccgccggcg 1122559
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      tgctcaccgccgccggcgac 321
                ||||||||||||||||||||
Sbjct: 35558379 tgctcaccgccgccggcgac 35558360
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 295    ctcgacgtgctcaccgccgccggc 318
              ||||||||||| ||||||||||||
Sbjct: 278423 ctcgacgtgcttaccgccgccggc 278400
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>gb|AF238238.1|AF238238 Arabidopsis thaliana branched-chain alpha-keto acid dehydrogenase
           E1 beta (din4) gene, promoter and partial sequence
          Length = 1127

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 gcagagttttcttttctttt 127
           ||||||||||||||||||||
Sbjct: 557 gcagagttttcttttctttt 576
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>gb|AC025226.4|AC025226 Homo sapiens BAC clone RP11-57J19 from Y, complete sequence
          Length = 168066

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cctcacaagtcacaacccac 199
             ||||||||||||||||||||
Sbjct: 64094 cctcacaagtcacaacccac 64075
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>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   tgctcaccgccgccggcgac 321
             ||||||||||||||||||||
Sbjct: 19319 tgctcaccgccgccggcgac 19338
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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
            complete sequence
          Length = 145290

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  tgctcaccgccgccggcgac 321
            ||||||||||||||||||||
Sbjct: 1270 tgctcaccgccgccggcgac 1251
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>gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, partial cds
          Length = 64211

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tgcacaaacatcccgaccaa 174
             ||||||||||||||||||||
Sbjct: 20893 tgcacaaacatcccgaccaa 20912
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>ref|NM_182615.1| Homo sapiens hypothetical protein MGC40069 (MGC40069), mRNA
          Length = 1882

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 agcagagttttcttttcttt 126
           ||||||||||||||||||||
Sbjct: 967 agcagagttttcttttcttt 986
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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 296   tcgacgtgctcaccgccgccggcg 319
             ||||||||||| ||||||||||||
Sbjct: 35819 tcgacgtgctcgccgccgccggcg 35796
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>dbj|AB119231.1| Bradyrhizobium sp. BDV5329 tfdA-like gene for hypothetical protein,
           partial cds
          Length = 307

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 94  caccgacgacgaaaagcaga 113
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>dbj|AB119229.1| Bradyrhizobium sp. ApB16 tfdA-like gene for hypothetical protein,
           partial cds
          Length = 307

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  caccgacgacgaaaagcaga 94
           ||||||||||||||||||||
Sbjct: 94  caccgacgacgaaaagcaga 113
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>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
          Length = 83287

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   gcagagttttcttttctttt 127
             ||||||||||||||||||||
Sbjct: 38817 gcagagttttcttttctttt 38798
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>dbj|AK105776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F08, full
           insert sequence
          Length = 1200

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tgctcaccgccgccggcgac 321
           ||||||||||||||||||||
Sbjct: 54  tgctcaccgccgccggcgac 73
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>dbj|AK104952.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D12, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 296 tcgacgtgctcaccgccgccggcg 319
           ||||||||||| ||||||||||||
Sbjct: 363 tcgacgtgctcgccgccgccggcg 386
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>emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal region; segment 1/2
          Length = 240000

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cctcacaagtcacaacccac 199
              ||||||||||||||||||||
Sbjct: 106711 cctcacaagtcacaacccac 106730
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>dbj|AK069887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038B06, full
           insert sequence
          Length = 1370

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 296 tcgacgtgctcaccgccgccggcg 319
           ||||||||||| ||||||||||||
Sbjct: 364 tcgacgtgctcgccgccgccggcg 387
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>dbj|AK068201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E23, full
           insert sequence
          Length = 1084

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 tgctcaccgccgccggcgac 321
           ||||||||||||||||||||
Sbjct: 51  tgctcaccgccgccggcgac 70
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>gb|BC032242.1| Homo sapiens hypothetical protein MGC40069, mRNA (cDNA clone
           MGC:40069 IMAGE:5216694), complete cds
          Length = 1882

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 agcagagttttcttttcttt 126
           ||||||||||||||||||||
Sbjct: 967 agcagagttttcttttcttt 986
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>emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chromosome 14, complete
             sequence
          Length = 197196

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tgcacaaacatcccgaccaa 174
             ||||||||||||||||||||
Sbjct: 47003 tgcacaaacatcccgaccaa 47022
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>gb|AC121355.9| Mus musculus chromosome 15, clone RP24-434C10, complete sequence
          Length = 124054

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cacaacccaccccagaaaac 209
             ||||||||||||||||||||
Sbjct: 96933 cacaacccaccccagaaaac 96952
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>emb|CT574593.2| Pan troglodytes chromosome X clone RP43-059H19 map Xq28, complete
             sequence
          Length = 151142

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cctcacaagtcacaacccac 199
             ||||||||||||||||||||
Sbjct: 33213 cctcacaagtcacaacccac 33194
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     tcaccgccgccggcgacaag 324
               ||||||||||||||||||||
Sbjct: 3215628 tcaccgccgccggcgacaag 3215647
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 127     tccggtcgctatctgttcgt 146
               ||||||||||||||||||||
Sbjct: 4549040 tccggtcgctatctgttcgt 4549059
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agcagagttttcttttcttt 126
              ||||||||||||||||||||
Sbjct: 361050 agcagagttttcttttcttt 361069
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      aaacaagcaaagtattttct 29
               ||||||||||||||||||||
Sbjct: 2205937 aaacaagcaaagtattttct 2205918
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>emb|AL845542.9| Mouse DNA sequence from clone RP23-288I12 on chromosome 2, complete
              sequence
          Length = 178976

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    cagagttttcttttcttttc 128
              ||||||||||||||||||||
Sbjct: 164243 cagagttttcttttcttttc 164262
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>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete
             sequence
          Length = 213391

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tgcacaaacatcccgaccaa 174
             ||||||||||||||||||||
Sbjct: 12477 tgcacaaacatcccgaccaa 12458


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,138,339
Number of Sequences: 3902068
Number of extensions: 3138339
Number of successful extensions: 311547
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 310921
Number of HSP's gapped (non-prelim): 626
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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