ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41d06 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 35.0 bits (79), Expect = 0.047 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -3 Query: 222 SISPPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 118 S +PP PN +PTS+ T PP P+ SIH F Sbjct: 691 SDNPPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 145 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +1 Query: 67 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 210 R+G R W AA +EPLVD + R RA G T A+G G + R Sbjct: 86 RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130
>DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 141 Score = 30.0 bits (66), Expect = 1.5 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +1 Query: 67 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR---RGDGRQAAL 237 R+G R W AA +EPLVD + + RA G T A+G G + R DG L Sbjct: 82 RKGRRPTWNAAAPGDVAEPLVDEV-VAQLRALG--ATVATGRFGAQMRVSLTNDGPFTVL 138 Query: 238 VAV 246 V V Sbjct: 139 VEV 141
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +1 Query: 130 DRADINRPRAAGWSCTCASGTDGIRPRRG 216 D +NRP G++C C G G+R G Sbjct: 3213 DATCVNRPDGRGYTCRCHLGRSGVRCEEG 3241
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -3 Query: 225 PSISPPRPNAISPTSTCTGP-PRCTRP 148 P+++ P PNA SPT T P P T P Sbjct: 525 PAVTTPTPNATSPTPAVTTPTPNATSP 551
>SYE_THEVO (Q979Q0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 548 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = +1 Query: 127 VDRADINRPRAAGWSCTCASGTDGIRPRRGDGRQAALVAVFVVVHDDHRRGVCGALRG 300 V + D+N P + D PR GD + + F V DDH G+ LRG Sbjct: 237 VMKTDLNHPNPSVRDWIAFRIIDAKHPRTGDKYRVFPMMSFSVAVDDHYLGLTHVLRG 294
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +1 Query: 130 DRADINRPRAAGWSCTCASGTDGIRPRRG 216 D +NRP G++C C G G+R G Sbjct: 3896 DATCVNRPDGRGYTCRCHLGRSGLRCEEG 3924
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Frame = -3 Query: 228 LPSISPPRPNAISPT----STCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTA 79 +P P+ SP + PP +P +SS H++ A+ AC LP+ Sbjct: 1054 VPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNK 1113 Query: 78 RTSPA 64 TSP+ Sbjct: 1114 ETSPS 1118
>SYE_METTH (O26157) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 553 Score = 28.5 bits (62), Expect = 4.4 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = +1 Query: 88 WQEAASQQSSEPLVD-RADINRPRAAGWSCTCASGTDGIRPRRGDGRQAALVAVFVVVHD 264 W+E + +V + D+N P A + PR G + + F V D Sbjct: 222 WREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVD 281 Query: 265 DHRRGVCGALRG 300 DH GV LRG Sbjct: 282 DHLLGVTHVLRG 293
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Frame = -3 Query: 228 LPSISPPRPNAISPT----STCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTA 79 +P P+ SP + PP +P +SS H++ A+ AC LP+ Sbjct: 1028 VPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNK 1087 Query: 78 RTSPA 64 TSP+ Sbjct: 1088 ETSPS 1092
>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain (VL);| Vitellin light chain rare isoform; Vitellin heavy chain rare isoform; Vitellin heavy chain (VH)] Length = 1782 Score = 25.4 bits (54), Expect(2) = 5.2 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Frame = +1 Query: 247 FVVVHDDHR---RGVCGALRGGRLDD 315 FVV D+R RG+CG + G + DD Sbjct: 1587 FVVFTQDYRNSTRGICGRMSGEQRDD 1612 Score = 21.2 bits (43), Expect(2) = 5.2 Identities = 9/34 (26%), Positives = 15/34 (44%) Frame = +2 Query: 29 LEIRSEPRPSSPAGEVRAVCGRKQQASKALNLWW 130 LEI +P A +V+ K+ L ++W Sbjct: 1517 LEIEIQPASGDSAYQVKVTTNTKKITDDDLTMYW 1550
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -3 Query: 225 PSISPPRPNAISPT--STCTGPPRCTRP 148 P + PPRP +P +T T PPR TRP Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186
>RS3_MYCTU (P0A5X6) 30S ribosomal protein S3| Length = 273 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 97 AASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPRRGD 219 AA + P +R RPR +G S T A+GTD R G+ Sbjct: 216 AAPAGADRPRRERPSGTRPRRSGASGTTATGTDAGRAAGGE 256
>RS3_MYCBO (P0A5X7) 30S ribosomal protein S3| Length = 273 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 97 AASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPRRGD 219 AA + P +R RPR +G S T A+GTD R G+ Sbjct: 216 AAPAGADRPRRERPSGTRPRRSGASGTTATGTDAGRAAGGE 256
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -3 Query: 225 PSISPPRPNAISPT--STCTGPPRCTRP 148 P + PPRP +P +T T PPR TRP Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220
>EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1) (HIF-PH1) (HPH-3) (Prolyl hydroxylase domain-containing protein 1) (PHD1) (Estrogen-induced tag 6) Length = 407 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 43 GAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 192 GA P+ P R+ A A S P + + R G SC+C+SG+ Sbjct: 111 GARPEAPKRKWAEDGGD--APSPSKRPWARQENQEAEREGGMSCSCSSGS 158
>RPP38_HUMAN (P78345) Ribonuclease P protein subunit p38 (EC 3.1.26.5) (RNaseP| protein p38) Length = 283 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +1 Query: 40 LGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWS 171 + AAPQ PGR S + + PLV + +N P WS Sbjct: 1 MAAAPQAPGR----------GSLRKTRPLVVKTSLNNPYIIRWS 34
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%) Frame = -3 Query: 225 PSISPPRPNA------ISPTSTCTGPPRCTRPVYISSIHQR 121 P +SP RP I P+S P T P Y+SS+ R Sbjct: 399 PCLSPTRPTPGSSDPLIKPSSPAVCPEPATSPKYVSSVTPR 439
>BRD8_MOUSE (Q8R3B7) Bromodomain-containing protein 8| Length = 951 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 53 PSSPAGEVRAVCGRKQQASKALNLW 127 PSSPA +VC Q+A +A +W Sbjct: 761 PSSPASSQFSVCSEDQEAIQAQKIW 785
>IF2_SYNY3 (P72689) Translation initiation factor IF-2| Length = 1001 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 252 DEDGDEGRLPSISPPRPNAISPTSTCTGPPRCTRP 148 D D D+G L S P+P PT PPR +P Sbjct: 276 DNDADDGDLLSTEKPKPKLKRPT-----PPRLGKP 305
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 222 SISPPRPNAISPTSTCTGPPRCTRPVYISS 133 S++P + +SPT++ PP+ T PV SS Sbjct: 202 SMAPKSGSPVSPTTSPPAPPKSTSPVSPSS 231
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = -3 Query: 249 EDGDEGRLP-------SISPPRPNAISPTSTCTGP-PRCTRP 148 ++G E + P +++ P PNA SPT T P P T P Sbjct: 496 DNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Frame = -3 Query: 249 EDGDEGRLP-------SISPPRPNAISPTSTCTGP-PRCTRP 148 ++G E + P +++ P PNA SPT T P P T P Sbjct: 496 DNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC| 2.1.1.-) Length = 274 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = -1 Query: 221 PSPRLGRMPSVPLAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPR 69 P RLG + L +QD P G + + G E WL A C P +P+ Sbjct: 117 PHARLGLV----LERLQD-PGNLGTILRTAAATGVEGIWLTADCVDPTSPK 162
>BRD8_HUMAN (Q9H0E9) Bromodomain-containing protein 8 (p120) (Skeletal muscle| abundant protein) (Thyroid hormone receptor coactivating protein 120kDa) (TrCP120) Length = 1235 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 53 PSSPAGEVRAVCGRKQQASKALNLW 127 PSSPA +VC Q+A +A +W Sbjct: 688 PSSPASSQFSVCSEDQEAIQAQKIW 712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,191,362 Number of Sequences: 219361 Number of extensions: 783871 Number of successful extensions: 3134 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2922 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3126 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
