ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41d06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 192 tgatggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttcgt 251 |||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||| Sbjct: 38384272 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 38384216 Query: 252 cgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctgga 311 || | |||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||| Sbjct: 38384215 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 38384156 Query: 312 tgatgacgtc 321 |||||||||| Sbjct: 38384155 tgatgacgtc 38384146
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 192 tgatggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttcgt 251 |||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||| Sbjct: 145097 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 145041 Query: 252 cgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctgga 311 || | |||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||| Sbjct: 145040 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 144981 Query: 312 tgatgacgtc 321 |||||||||| Sbjct: 144980 tgatgacgtc 144971
>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full insert sequence Length = 2826 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 192 tgatggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttcgt 251 |||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||| Sbjct: 137 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 193 Query: 252 cgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctgga 311 || | |||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||| Sbjct: 194 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 253 Query: 312 tgatgacgtc 321 |||||||||| Sbjct: 254 tgatgacgtc 263
>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full insert sequence Length = 2988 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 192 tgatggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttcgt 251 |||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||| Sbjct: 303 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 359 Query: 252 cgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctgga 311 || | |||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||| Sbjct: 360 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 419 Query: 312 tgatgacgtc 321 |||||||||| Sbjct: 420 tgatgacgtc 429
>ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 131 bits (66), Expect = 2e-27 Identities = 113/128 (88%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 194 atggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttcgtcg 253 |||||||| ||||||||| | ||||||||||||||||| ||||||||||| |||||| Sbjct: 1 atggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgtcg 57 Query: 254 ttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctggatg 313 | |||||||||||||||| ||| ||||| |||||||||||| |||| |||||||||||| Sbjct: 58 ctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctggatg 117 Query: 314 atgacgtc 321 |||||||| Sbjct: 118 atgacgtc 125
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence Length = 2841 Score = 101 bits (51), Expect = 1e-18 Identities = 110/129 (85%), Gaps = 3/129 (2%) Strand = Plus / Plus Query: 190 actgatggcattcggccgaggcggggagatggacggcaggcggccctcgtcgccgtcttc 249 |||||||||||| |||||||| ||| ||||||||||| | ||||| |||||| |||| Sbjct: 212 actgatggcatttggccgaggtgggaagatggacggccgccggccgtcgtcgtcgtc--- 268 Query: 250 gtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgcgtggtgggcgcctg 309 |||||| |||||||| ||||| | ||| || ||||||||||||||| |||| ||||| || Sbjct: 269 gtcgttctgcacgaccaccacggtcgtcgtctttgtggcgctctgcctggtcggcgcgtg 328 Query: 310 gatgatgac 318 ||||||||| Sbjct: 329 gatgatgac 337
>ref|XM_690503.1| PREDICTED: Danio rerio similar to sodium-calcium exchanger (LOC567212), mRNA Length = 1422 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 268 caccgccgtggtgtttgtggcgctc 292 ||||||||||||||||||||||||| Sbjct: 1005 caccgccgtggtgtttgtggcgctc 1029
>emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in linkage group 18, complete sequence Length = 191296 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 268 caccgccgtggtgtttgtggcgctc 292 ||||||||||||||||||||||||| Sbjct: 48035 caccgccgtggtgtttgtggcgctc 48059
>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205638 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||||||||||||||||||||| Sbjct: 108108 ccccggccggcgaggtgcgcgcgg 108085
>emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surrounding NotI site, clone NB1-803R Length = 460 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GA3RS Length = 667 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surrounding NotI site, clone NL1-FL23RS Length = 557 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surrounding NotI site, clone NR1-194R Length = 724 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>gb|AF175313.1|AF175313 Oncorhynchus mykiss cardiac sodium-calcium exchanger (NCX) mRNA, complete cds Length = 3302 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 269 accgccgtggtgtttgtggcgctc 292 |||||||||||||||||||||||| Sbjct: 2562 accgccgtggtgtttgtggcgctc 2585
>ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0071K19.13), mRNA Length = 1707 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 59 cgtcgccgtcttcgtcgttgt 79
>ref|XM_479657.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 198 gggagatggacggcaggcggc 218
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 85655 gggagatggacggcaggcggc 85675
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 118443 cgtcgccgtcttcgtcgttgt 118423
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence Length = 108051 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 cccagctccccggccggcgag 73 ||||||||||||||||||||| Sbjct: 7532 cccagctccccggccggcgag 7512
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 cggccctcgtcgccgtcttcgtcgt 254 |||||||||||| |||||||||||| Sbjct: 241542 cggccctcgtcggcgtcttcgtcgt 241518
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11, complete sequence Length = 113677 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 28782 gggagatggacggcaggcggc 28762
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 26754413 gggagatggacggcaggcggc 26754433
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 138312 gggagatggacggcaggcggc 138292
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 26060894 gggagatggacggcaggcggc 26060914
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 gggagatggacggcaggcggc 233 ||||||||||||||||||||| Sbjct: 53647 gggagatggacggcaggcggc 53627
>emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene Length = 2576 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 cggccctcgtcgccgtcttcgtcgt 254 |||||||||||| |||||||||||| Sbjct: 1813 cggccctcgtcggcgtcttcgtcgt 1837
>emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surrounding NotI site, clone NR1-TG13RS Length = 600 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 tccccggccggcgaggtgcgcgcgg 83 |||||||||||||||| |||||||| Sbjct: 45 tccccggccggcgaggggcgcgcgg 69
>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence Length = 2160 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full insert sequence Length = 1977 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 cgtcgccgtcttcgtcgttgt 257 ||||||||||||||||||||| Sbjct: 353382 cgtcgccgtcttcgtcgttgt 353362
>ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex and mab-3 related transcription factor 2 (LOC473159), mRNA Length = 2433 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ctcgtcgccgtcttcgtcgt 254 |||||||||||||||||||| Sbjct: 468 ctcgtcgccgtcttcgtcgt 449
>ref|XM_464814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 609 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 cctcgtcgccgtcttcgtcgttgtgcac 261 |||||||| |||||||||||| |||||| Sbjct: 99 cctcgtcgtcgtcttcgtcgtcgtgcac 126
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 40.1 bits (20), Expect = 4.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 tcgtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgc 295 |||||| ||||| ||||| | |||| ||| ||||| |||||||||||| Sbjct: 143183 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 143230
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 40.1 bits (20), Expect = 4.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 tcgtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgc 295 |||||| ||||| ||||| | |||| ||| ||||| |||||||||||| Sbjct: 13036 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 13083
>gb|AY078063.2| Zea mays B transcriptional activator (b1) gene, b1-B' allele, exons 1 through 3 and partial cds Length = 107840 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 202 cggccgaggcggggagatggacggcaggcggc 233 ||||| |||||||| ||||| ||||||||||| Sbjct: 312 cggccaaggcggggcgatgggcggcaggcggc 343
>ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506367.174) partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tcgtcgttgtgcacgacgac 267 |||||||||||||||||||| Sbjct: 369 tcgtcgttgtgcacgacgac 350
>ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506629.90) partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tcgtcgttgtgcacgacgac 267 |||||||||||||||||||| Sbjct: 369 tcgtcgttgtgcacgacgac 350
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctcgtcgccgtcttcgtcg 253 |||||||||||||||||||| Sbjct: 2397334 cctcgtcgccgtcttcgtcg 2397353
>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence Length = 118935 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ggtgtgtggcaggaagcagcaagc 105 |||| ||||||||||||||||||| Sbjct: 48288 ggtgggtggcaggaagcagcaagc 48311
>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216792 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 agcagcaagccagcaaagct 115 |||||||||||||||||||| Sbjct: 16209 agcagcaagccagcaaagct 16228
>dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper chaperon, ortho-aminophenol oxidase, complete cds Length = 1530 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggccgcgtgcagcggggtgg 168 |||||||||||||||||||| Sbjct: 367 ggccgcgtgcagcggggtgg 348
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 tcgtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgc 295 |||||| ||||| ||||| | |||| ||| ||||| |||||||||||| Sbjct: 4361673 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4361720
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggcaggcggccctcgtcgcc 243 |||||||||||||||||||| Sbjct: 1787592 ggcaggcggccctcgtcgcc 1787573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cctcgtcgccgtcttcgtcgttgtgcac 261 |||||||| |||||||||||| |||||| Sbjct: 8362905 cctcgtcgtcgtcttcgtcgtcgtgcac 8362878
>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104150 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tgtacatgtgctagtgggac 191 |||||||||||||||||||| Sbjct: 37641 tgtacatgtgctagtgggac 37622
>ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripartite motif-containing 65 (LOC303684), mRNA Length = 1384 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ggagccgcgccccagctccc 62 |||||||||||||||||||| Sbjct: 28 ggagccgcgccccagctccc 47
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccggcgaggtgcgcgcggtg 85 |||||||||||||||||||| Sbjct: 157990 ccggcgaggtgcgcgcggtg 157971
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggcaggcggccctcgtcgcc 243 |||||||||||||||||||| Sbjct: 174164 ggcaggcggccctcgtcgcc 174145
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1227_D07 Length = 118358 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggcaggcggccctcgtcgcc 243 |||||||||||||||||||| Sbjct: 26254 ggcaggcggccctcgtcgcc 26235
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0011N12 Length = 158586 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cctcgtcgccgtcttcgtcgttgtgcac 261 |||||||| |||||||||||| |||||| Sbjct: 15755 cctcgtcgtcgtcttcgtcgtcgtgcac 15728
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cctcgtcgccgtcttcgtcgttgtgcac 261 |||||||| |||||||||||| |||||| Sbjct: 139576 cctcgtcgtcgtcttcgtcgtcgtgcac 139549
>dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence Length = 3015 Score = 40.1 bits (20), Expect = 4.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 tcgtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgc 295 |||||| ||||| ||||| | |||| ||| ||||| |||||||||||| Sbjct: 238 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 285
>emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surrounding NotI site, clone NR1-CF19RS Length = 674 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ccccggccggcgaggtgcgcgcgg 83 |||||| ||||||||||||||||| Sbjct: 45 ccccggacggcgaggtgcgcgcgg 68
>emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ED2RS Length = 586 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ggccggcgaggtgcgcgcgg 83 |||||||||||||||||||| Sbjct: 49 ggccggcgaggtgcgcgcgg 68
>gb|AF466203.1| Zea mays clone ZMBBb_0092E12, partial sequence Length = 147198 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 202 cggccgaggcggggagatggacggcaggcggc 233 ||||| |||||||| ||||| ||||||||||| Sbjct: 23007 cggccaaggcggggcgatgggcggcaggcggc 22976
>dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full insert sequence Length = 1055 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cctcgtcgccgtcttcgtcg 253 |||||||||||||||||||| Sbjct: 64 cctcgtcgccgtcttcgtcg 83
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cggccggcgaggtgcgcgcg 82 |||||||||||||||||||| Sbjct: 9240 cggccggcgaggtgcgcgcg 9259
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cggccggcgaggtgcgcgcg 82 |||||||||||||||||||| Sbjct: 104187 cggccggcgaggtgcgcgcg 104206
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 tcgtcgttgtgcacgacgaccaccgccgtggtgtttgtggcgctctgc 295 |||||| ||||| ||||| | |||| ||| ||||| |||||||||||| Sbjct: 4370367 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4370414
>gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) gene, multicopy single-stranded DNA (msDNA) and RNA (msdRNA) genes, complete cds Length = 1640 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggccggcgaggtgcgcgcggtgtg 87 ||||| |||||||||||||||||| Sbjct: 1485 ggccgtcgaggtgcgcgcggtgtg 1462
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ggagccgcgccccagctccc 62 |||||||||||||||||||| Sbjct: 147553 ggagccgcgccccagctccc 147534
>dbj|AB033571.1| Eptatretus burgeri hgPTPR2Ab mRNA, partial cds Length = 1878 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 gtgtttgtggcgctctgcgtggtg 301 ||||||||||||||| |||||||| Sbjct: 1225 gtgtttgtggcgctcagcgtggtg 1248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,049,645 Number of Sequences: 3902068 Number of extensions: 2049645 Number of successful extensions: 67229 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66750 Number of HSP's gapped (non-prelim): 473 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
