ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41d03 |
|---|---|
| Clone Library Name | barley_pub |
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 32.7 bits (73), Expect = 0.27 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLA 88 APAPS+ ASSRSP P P +P A Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -3 Query: 120 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 10 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 30.0 bits (66), Expect = 1.7 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P+P ASSR P+P PP+ P SP SP Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258
>IGHA1_GORGO (P20758) Ig alpha-1 chain C region| Length = 353 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 5 RAPA-PSTLASSRSPNPDPPACHPTSPLAR 91 R P+ P T + S P P PP CHP L R Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131
>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)| Length = 264 Score = 29.6 bits (65), Expect = 2.3 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 97 PAP + AS+ SP+P PPAC HP+S ++ P Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133
>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1079 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P PS +A SP+P P P +P A SP Sbjct: 924 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952
>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1839 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = +2 Query: 23 TLASSRSP----NPDPPACHPTSPLARSP 97 TL +++P NP PP+ HP +PLA P Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 29.3 bits (64), Expect = 3.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 5 RAPAPSTLASSRSPNPDPPACHPTSP 82 R PA T +S P+P PPA P +P Sbjct: 2832 RNPAEPTSSSPAGPSPPPPAVQPVAP 2857
>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1083 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P PS +A SP+P P P +P A SP Sbjct: 928 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956
>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)| Length = 264 Score = 29.3 bits (64), Expect = 3.0 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 97 PAP + +S SP+P PPAC HP+S ++ P Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P PS +A SP+P P P +P A SP Sbjct: 926 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954
>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (DSIF p160) (Tat-cotransactivator 1 protein) (Tat-CT1 protein) Length = 1087 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P PS +A SP+P P P +P A SP Sbjct: 932 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960
>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (Protein foggy) Length = 1084 Score = 29.3 bits (64), Expect = 3.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 11 PAPSTLASSRSPNPDPPACHPTSPLARSP 97 P PS +A SP+P P P +P A SP Sbjct: 930 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLARSP 97 +PAP + S P+P PP+ P SP SP Sbjct: 72 SPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLARSP 97 +PAP + S P+P PPA P SP+ SP Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLARSP 97 +PAP + A P+P PP+ P +P + SP Sbjct: 110 SPAPPSPAPPSPPSPAPPSPSPPAPPSPSP 139
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +2 Query: 5 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 82 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +2 Query: 5 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 82 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 2 SRAPAPSTLASSRSPNPDPPACHPTSPL 85 S+A PS SS SP+P PP HP +P+ Sbjct: 39 SQAGHPS---SSSSPSPGPPTKHPKTPM 63
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +2 Query: 5 RAPAPSTLASSRSPNPDPPACHPTSPLA-RSP 97 R P P ++ SP P PPA P +P + R+P Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPGAPASPRAP 790
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 3 PVLPPRPHSRAPDPRTLTPPHAIPLA 80 P+ PP P S +P P + TPP P A Sbjct: 716 PLRPPSPMSSSPTPPSSTPPSPQPKA 741
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 15 PRPHSRAPDPRTLTPPHAIP 74 P P R PDP + PPHA P Sbjct: 25 PDPTRRHPDPESRAPPHARP 44
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +2 Query: 5 RAPAPSTLASSRSPNPDPPACH---PTSPLARSP 97 R+P+P RSP+P PP P+ P RSP Sbjct: 542 RSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSP 575
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +3 Query: 6 VLPPRPHSRAPDPRTLTPPHAIP 74 V PP PH +P P TPP +P Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLARSP 97 APAPS+ ++R+P+ A P P SP Sbjct: 206 APAPSSAPAARAPSSPSSAPRPARPAGASP 235
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 2 SRAPAPSTLASSRSPNPDPPACHPTSPLARSP 97 SRA P T A S P P PPA +SP A +P Sbjct: 220 SRAGCP-TAAGSLLPAPRPPASSASSPQAAAP 250
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +2 Query: 2 SRAPAPSTLASSRSPNPDPPACHPTSPLA 88 +RAP P+ S P P+P P +P A Sbjct: 760 ARAPLPAPAPPSTPPGPEPAPAQPAAPRA 788
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 8 APAPSTLASSRSPNPDPPACHPTSPLARSP 97 APAPS+ ++R+P+ A P P SP Sbjct: 192 APAPSSAPAARAPSSPSSAPRPARPAGASP 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,961,601 Number of Sequences: 219361 Number of extensions: 274992 Number of successful extensions: 3652 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3602 length of database: 80,573,946 effective HSP length: 42 effective length of database: 71,360,784 effective search space used: 1712658816 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
