ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41c12 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAG_FUJSV (P03326) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 309 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 166 APPPPYVGSGLYPSLAGVGEQQGQGG 191
>GAG_AVIMC (P03323) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAG_AVEV2 (P06937) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19 beta; Core protein p10] (Fragment) Length = 188 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 119 APPPPYVGSGLYPSLAGVGEQQGQGG 144
>GAGC_AVISC (P05433) P47(GAG-CRK) protein| Length = 440 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 172 APPPPYVGSGLYPSLAGVGEQQGQGG 197
>GAG_AVEV1 (P06936) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19; Core protein p23; Core protein p2; Core protein p10] (Fragment) Length = 239 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)| Length = 421 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 72 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 185 GN+P + GGG + L+ L++D V GR Q Q Sbjct: 204 GNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQQ 241
>GAG_AVIMD (P06444) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 109 APPPPRTARGVFPSVAKRGRREINGG 32 APPPP G++PS+A G + GG Sbjct: 170 APPPPYVGSGLYPSLAGVGELQGQGG 195
>NCAP_CVHSA (P59595) Nucleocapsid protein (N structural protein) (NC)| Length = 422 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 72 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 185 GN+P + GGG + L+ L++D V G+ Q Q Sbjct: 205 GNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQ 242
>MODC_MYCTU (P95155) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 369 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 99 GGGAS*LSCLVVDAATSARIAVGGR 173 GG +C+ VDAAT R+A G R Sbjct: 323 GGAPGLAACITVDAATELRVAPGSR 347
>THYG_BOVIN (P01267) Thyroglobulin precursor| Length = 2769 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -2 Query: 140 CVDDQTRELXXXXXXADRARCVPECG*KRA 51 CVD Q REL R RC EC +RA Sbjct: 637 CVDAQGRELAGSRVRGGRPRCPTECEKQRA 666
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 318 AGPRRASGPTARPRRGRQP 262 +GPRR GPTA P G +P Sbjct: 2335 SGPRRYPGPTAEPLAGDRP 2353
>CA077_RAT (Q498T2) Protein C1orf77 homolog| Length = 248 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 102 LLRGPRAVCSRVWLKEGGERSTG 34 LLRG RAV R+ L+ GG R G Sbjct: 138 LLRGGRAVAPRMGLRRGGVRGRG 160
>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog| Length = 249 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 102 LLRGPRAVCSRVWLKEGGERSTG 34 LLRG RAV R+ L+ GG R G Sbjct: 139 LLRGGRAVAPRMGLRRGGVRGRG 161
>CA077_HUMAN (Q9Y3Y2) Protein C1orf77| Length = 248 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 102 LLRGPRAVCSRVWLKEGGERSTG 34 LLRG RAV R+ L+ GG R G Sbjct: 138 LLRGGRAVAPRMGLRRGGVRGRG 160
>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog| Length = 248 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 Query: 102 LLRGPRAVCSRVWLKEGGERSTG 34 LLRG RAV R+ L+ GG R G Sbjct: 138 LLRGGRAVAPRMGLRRGGVRGRG 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,990,755 Number of Sequences: 219361 Number of extensions: 405252 Number of successful extensions: 1343 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1340 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
