ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl41c11 |
|---|---|
| Clone Library Name | barley_pub |
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -2 Query: 263 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 99 +TTS G G P +G LRP + P G G + + P GD KP Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545
>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)| Length = 319 Score = 31.6 bits (70), Expect = 0.81 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = -1 Query: 381 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 202 R K +S FGT+ + V VD++ P K T F+ D++ + Sbjct: 70 RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126 Query: 201 GHGGRETLWER 169 G G ET W+R Sbjct: 127 GLPGEETYWQR 137
>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC| 2.5.1.48) (O-succinylhomoserine (thiol)-lyase) Length = 575 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +1 Query: 280 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 396 D+LK F G NGT+FTL A S++ KFG D + I Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Frame = -2 Query: 425 TSPSSSV*VRMKSASGPNLKALA---ILERRADR 333 TSPSS + +SAS LKA+A ILERRA R Sbjct: 130 TSPSSDTDLLDRSASKTELKAIAHARILERRASR 163
>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 655 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 290 LSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPC 177 L +SP TL + SQGS D RP A E+PC Sbjct: 482 LPLSP--TLASNSQGSQGDQRPDRSAPRSASQAEEEPC 517
>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5| Length = 215 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -2 Query: 266 LTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGD 120 +T +S S P+A P ++ RGGGR +R + R RGD Sbjct: 1 MTDSSPQSNPNAVPGAADVPAAAEGQQQEQRRGGGRGERGDRRGGRRGD 49
>Y126_METJA (Q57590) Hypothetical protein MJ0126| Length = 98 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = -1 Query: 399 ENEVSIRAKLKSTCNFGTKSR*IQSEVCSVDIAI---EPLKCVTIFDLDD 259 + E+ + K+KS FG+ +R Q+E +DI I EP+ + + +L++ Sbjct: 15 KKELKEKYKVKSIAIFGSYARNEQTETSDIDILIDYYEPISLLKLIELEN 64
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -2 Query: 239 PDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSG 108 PD P GG + + + CG G G +DR E + E+SG Sbjct: 524 PDKEPELGG--QEEGERDGLCGLGNGCADRKEAETESQNSELSG 565
>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 20) Length = 726 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 306 CQRNTLHFESICSSFQNCKCF*VW 377 CQR T + IC++ Q+C C W Sbjct: 635 CQRKTCNMRGICNNKQHCHCNHEW 658
>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -2 Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)| (HLS7-interacting protein kinase) Length = 535 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -2 Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -2 Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77
>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein| Length = 535 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -2 Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129 L SVSP +T +TTS S + S + ++ E PCGR R + V +R P Sbjct: 27 LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,730,575 Number of Sequences: 219361 Number of extensions: 839870 Number of successful extensions: 2866 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2866 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
