ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41c07 |
|---|---|
| Clone Library Name | barley_pub |
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 124 bits (311), Expect = 1e-28 Identities = 57/87 (65%), Positives = 66/87 (75%) Frame = +1 Query: 205 MAANRGMVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAX 384 M A+ G+VAGS+ RNE V IR++ D K +K GQ CQICGD VG++ TGDVFVA Sbjct: 1 MEASAGLVAGSYRRNELVRIRHESDGGT--KPLKNMNGQICQICGDDVGLAETGDVFVAC 58 Query: 385 HECAFPVCRPCYEYERKDGVXCCPQCK 465 +ECAFPVCRPCYEYERKDG CCPQCK Sbjct: 59 NECAFPVCRPCYEYERKDGTQCCPQCK 85
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 110 bits (276), Expect = 1e-24 Identities = 49/87 (56%), Positives = 62/87 (71%) Frame = +1 Query: 205 MAANRGMVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAX 384 M A+ G+VAGSHNRNE V+I N + K +K GQ C+ICGD +G++ GD+FVA Sbjct: 1 MEASAGLVAGSHNRNELVVIHNHEEP----KPLKNLDGQFCEICGDQIGLTVEGDLFVAC 56 Query: 385 HECAFPVCRPCYEYERKDGVXCCPQCK 465 +EC FP CRPCYEYER++G CPQCK Sbjct: 57 NECGFPACRPCYEYERREGTQNCPQCK 83
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 106 bits (265), Expect = 3e-23 Identities = 50/81 (61%), Positives = 59/81 (72%) Frame = +1 Query: 223 MVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFP 402 MVAGS+ R EFV R+D D K +K GQ CQICGD VG++ TG+VFVA +EC FP Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGL--KPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFP 58 Query: 403 VCRPCYEYERKDGVXCCPQCK 465 +C+ CYEYERKDG CCPQCK Sbjct: 59 LCQSCYEYERKDGSQCCPQCK 79
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 106 bits (264), Expect = 3e-23 Identities = 48/81 (59%), Positives = 59/81 (72%) Frame = +1 Query: 223 MVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFP 402 ++AGSHNRNEFV+I D A + V+ GQ CQICGD + +S G+ FVA +ECAFP Sbjct: 7 LIAGSHNRNEFVLINADESARI--RSVEELSGQTCQICGDEIELSVDGESFVACNECAFP 64 Query: 403 VCRPCYEYERKDGVXCCPQCK 465 VCRPCYEYER++G CPQCK Sbjct: 65 VCRPCYEYERREGNQSCPQCK 85
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 105 bits (261), Expect = 7e-23 Identities = 46/81 (56%), Positives = 60/81 (74%) Frame = +1 Query: 223 MVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFP 402 ++AGSHNRNEFV+I D A + V+ GQ CQICGD + ++ + ++FVA +ECAFP Sbjct: 7 LIAGSHNRNEFVLINADESARI--RSVQELSGQTCQICGDEIELTVSSELFVACNECAFP 64 Query: 403 VCRPCYEYERKDGVXCCPQCK 465 VCRPCYEYER++G CPQCK Sbjct: 65 VCRPCYEYERREGNQACPQCK 85
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 102 bits (255), Expect = 4e-22 Identities = 46/81 (56%), Positives = 59/81 (72%) Frame = +1 Query: 223 MVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFP 402 ++AGSHNRNEFV+I D +A + V+ GQ CQIC D + ++ G+ FVA +ECAFP Sbjct: 7 LIAGSHNRNEFVLINADENARI--RSVQELSGQTCQICRDEIELTVDGEPFVACNECAFP 64 Query: 403 VCRPCYEYERKDGVXCCPQCK 465 VCRPCYEYER++G CPQCK Sbjct: 65 VCRPCYEYERREGNQACPQCK 85
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 95.1 bits (235), Expect = 8e-20 Identities = 41/80 (51%), Positives = 55/80 (68%) Frame = +1 Query: 223 MVAGSHNRNEFVMIRNDGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFP 402 ++AGSHNRNEFV+I D A + + GQ C+IC D + ++ G+ F+A +ECAFP Sbjct: 7 LIAGSHNRNEFVLINADDTARI--RSAEELSGQTCKICRDEIELTDNGEPFIACNECAFP 64 Query: 403 VCRPCYEYERKDGVXCCPQC 462 CRPCYEYER++G CPQC Sbjct: 65 TCRPCYEYERREGNQACPQC 84
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 84.0 bits (206), Expect = 2e-16 Identities = 37/65 (56%), Positives = 42/65 (64%) Frame = +1 Query: 271 DGDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFPVCRPCYEYERKDGVXC 450 + + GK +K Q CQIC D VG + GD FVA C+FPVCRPCYEYERKDG Sbjct: 2 ESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQS 61 Query: 451 CPQCK 465 CPQCK Sbjct: 62 CPQCK 66
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 72.0 bits (175), Expect = 7e-13 Identities = 27/46 (58%), Positives = 32/46 (69%) Frame = +1 Query: 325 CQICGDTVGVSATGDVFVAXHECAFPVCRPCYEYERKDGVXCCPQC 462 C++CGD V G FVA H C +PVC+PCYEYER +G CCPQC Sbjct: 23 CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQC 68
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 63.2 bits (152), Expect = 3e-10 Identities = 23/46 (50%), Positives = 32/46 (69%) Frame = +1 Query: 325 CQICGDTVGVSATGDVFVAXHECAFPVCRPCYEYERKDGVXCCPQC 462 C CG+ +GV + G+ FVA HEC+FP+C+ C EYE K+G C +C Sbjct: 9 CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRC 54
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/71 (29%), Positives = 26/71 (36%) Frame = -1 Query: 389 SXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRIMTNSLRLCDPATIPRLA 210 S T SP T T P P PP T+ P +PS I T + L P ++ Sbjct: 1400 SPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPIS 1459 Query: 209 AIFRSPAALTP 177 P TP Sbjct: 1460 TTTTPPPTTTP 1470
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -1 Query: 350 PTVSPHIWQP*PPAPFTSLPGAGASPSLRIMTNSLRLCDPATIPRLAAIFRSPAALTPH 174 P+ +P I P PP PFT PG P T P T+P + P+ PH Sbjct: 849 PSQAPGILTPPPPYPFTPQPGVLGQPPPTRHTQLYPGPPPDTLPPHSGALPFPSPGPPH 907
>KLF6_RAT (O35819) Krueppel-like factor 6 (Core promoter element-binding| protein) (Transcription factor Zf9) Length = 283 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +1 Query: 274 GDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFPVCRPCY 420 GD P+PGK G G+ GD A+ D H C F CR Y Sbjct: 167 GDLPSPGKVRSGTSGKS----GDKGSGDASPDGRRRVHRCHFNGCRKVY 211
>KLF6_MOUSE (O08584) Krueppel-like factor 6 (Core promoter element-binding| protein) Length = 283 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +1 Query: 274 GDAPAPGKEVKGAGGQGCQICGDTVGVSATGDVFVAXHECAFPVCRPCY 420 GD P+PGK G G+ GD A+ D H C F CR Y Sbjct: 167 GDLPSPGKVRSGTSGKS----GDKGNGDASPDGRRRVHRCHFNGCRKVY 211
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 27.7 bits (60), Expect(2) = 2.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 240 VRPRDHPPVGRHLSLPRRPHTPPAAVTKA 154 +RP+ PP G LP PH PP++ + A Sbjct: 811 LRPQSQPPEG---PLPPAPHLPPSSTSSA 836 Score = 20.8 bits (42), Expect(2) = 2.9 Identities = 13/41 (31%), Positives = 15/41 (36%) Frame = -1 Query: 341 SPHIWQP*PPAPFTSLPGAGASPSLRIMTNSLRLCDPATIP 219 SPH+ P P P + P S S L C P P Sbjct: 737 SPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAP 777
>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription| C16C9.04c Length = 489 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +1 Query: 325 CQICGDTVGVSATGDVFVAXHECAFPVCRPCYEYERKDGVXCCPQCK 465 C +C + + +S D +C + VCR C+ + ++D CP C+ Sbjct: 18 CPLCMEEIDIS---DKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACR 61
>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) Length = 727 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -1 Query: 443 TPSLRSYS*QGRQTGKAHSXQATKTSP-VAETPTVSPHIWQP*PPAPFTSLPGAGASPS 270 +P++ + S T + A P V T ++ P ++QP P + ++ PGA SP+ Sbjct: 369 SPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSPGANYSPT 427
>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)| Length = 684 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 398 KAHSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASP 273 +A+S QA++ +P + P QP PP + PG G P Sbjct: 271 RANSVQASRPAPASMPSPAPPQPVQPGPPGGSRAAPGPGRFP 312
>TUS1_YEAST (Q06412) Rho1 guanine nucleotide exchange factor TUS1 (TOR unique| function suppressor protein 1) Length = 1307 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = -1 Query: 392 HSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRIMTNSLRLCDPATIPRL 213 HS + TS TP + ++ + PP P P L T S+R+ P P Sbjct: 80 HSARGNGTSSSESTPKSTKYVKERRPPPP----------PPLLYSTESIRIDSPMVSPSS 129 Query: 212 AAIFRSPAALT 180 + RSP L+ Sbjct: 130 QSRERSPNKLS 140
>D11_DICDI (P05817) Prestalk D11 protein precursor| Length = 282 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 388 ECAFPVCRPCYEYERKDGVXCCPQCK 465 +CA PVC+P Y D CC +C+ Sbjct: 93 KCATPVCKPYYRLNMTD--SCCGRCE 116
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -1 Query: 362 VAETPTVSPHIWQP*PPAPFTSLPGAGASPS 270 V T ++ P ++QP P + ++ PGA SP+ Sbjct: 393 VVTTASIRPSVYQPVPASSYSPSPGANYSPT 423
>OXR1_ASPFU (Q4WX99) Oxidation resistance protein 1| Length = 324 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -1 Query: 410 RQTGKAHSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRIMTNSL----R 243 R+ ++ ++ TSP P + +QP P P T PG G P +++T +L R Sbjct: 77 RKMNARNNRDSSTTSPDIFVPIRTASPFQPPPLTPLTLTPGPGV-PQQQLLTRALAEEIR 135 Query: 242 LCDPATI 222 L PA + Sbjct: 136 LLVPARL 142
>ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-sensing ion| channel 3) (ASIC3) (hASIC3) (Testis sodium channel 1) (hTNaC1) Length = 531 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -3 Query: 207 HLSLPRRPHTPPAAVTK 157 HLSL RP TPP AVTK Sbjct: 500 HLSLGPRPPTPPCAVTK 516
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -3 Query: 240 VRPRDHPPVGRHLSLPRRPHTP 175 + P+ PP G+H++ PR P P Sbjct: 2282 IAPQSRPPEGKHITTPREPLPP 2303
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 28.5 bits (62), Expect = 8.9 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -1 Query: 395 AHSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRI-MTNSLRLCDPATIP 219 AH QA ++ TPT +P IW P AP L A A+ S+ I +T+ RL Sbjct: 756 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 801 Query: 218 RLAAIFRSP 192 AAIFR P Sbjct: 802 -PAAIFRPP 809
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/73 (31%), Positives = 26/73 (35%) Frame = -1 Query: 392 HSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRIMTNSLRLCDPATIPRL 213 H T T P TPT PH P P T P +P + SL L P+ P Sbjct: 29 HPHTPTHTHPHTPTPTPHPHPHTPHPHTTPTPTPHHTHTPHTTLSNLSLNL--PSHYP-- 84 Query: 212 AAIFRSPAALTPH 174 SP PH Sbjct: 85 ----TSPLVTLPH 93
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 377 TKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPS 270 T+T +++ PT SP P PP+P T G SPS Sbjct: 691 TETESISKNPTKSP----PPPPSPSTMDTGTSNSPS 722
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.5 bits (62), Expect = 8.9 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -1 Query: 395 AHSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRI-MTNSLRLCDPATIP 219 AH QA ++ TPT +P IW P AP L A A+ S+ I +T+ RL Sbjct: 756 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 801 Query: 218 RLAAIFRSP 192 AAIFR P Sbjct: 802 -PAAIFRPP 809
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 28.5 bits (62), Expect = 8.9 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -1 Query: 395 AHSXQATKTSPVAETPTVSPHIWQP*PPAPFTSLPGAGASPSLRI-MTNSLRLCDPATIP 219 AH QA ++ TPT +P IW P AP L A A+ S+ I +T+ RL Sbjct: 741 AHRVQAAASA----TPTPTPVIWTPLIQAP---LQAAAATTSVAIALTHHPRL------- 786 Query: 218 RLAAIFRSP 192 AAIFR P Sbjct: 787 -PAAIFRPP 794
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 28.5 bits (62), Expect = 8.9 Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Frame = -1 Query: 389 SXQATKTSPVAETPTVSPHIW------------QP*PPAPFTSLP-GAGASPSLRIMTNS 249 S A KT P PT P Q PP P T P GA A+P+ + Sbjct: 440 SASAAKTPPTTPAPTTPPPTSTHATPRPTTPGPQTTPPGPATPGPVGASAAPT---ADSP 496 Query: 248 LRLCDPATIPRLAAIFRSPAALT 180 L PAT P +A S AA T Sbjct: 497 LTASPPATAPGPSAANVSVAATT 519 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,564,047 Number of Sequences: 219361 Number of extensions: 850455 Number of successful extensions: 3515 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3498 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
