Clone Information

BLAST Search Result

Clone Name	bastl41c03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_477026.1\| Oryza sativa (japonica cultivar-group), mRNA	343	3e-91
2	dbj\|AK100095.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	3e-91
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
4	dbj\|AP005259.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
5	gb\|AC126333.7\| Homo sapiens chromosome 8, clone RP11-666I19, com...	44	0.40
6	gb\|AF188030.5\| Homo sapiens chromosome 8 clone RP4-593A12 map p2...	44	0.40
7	gb\|AF214636.4\| Homo sapiens chromosome 8 clone RP4-605G11 map p2...	44	0.40
8	gb\|AC135112.5\| Mus musculus BAC clone RP23-477F17 from chromosom...	44	0.40
9	gb\|AY123972.1\| Arthrobacter sp. BP2 cyclohexanone oxidation gene...	44	0.40
10	emb\|BX294183.17\| Mouse DNA sequence from clone RP24-388B10 on ch...	44	0.40
11	gb\|AC154247.2\| Mus musculus BAC clone RP24-176G22 from chromosom...	44	0.40
12	dbj\|AB039951.1\| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ...	44	0.40
13	dbj\|AB010576.1\| Bacillus subtilis ComX, ComQ and DegQ genes, com...	44	0.40
14	ref\|XM_472252.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.6
15	gb\|AE009089.1\| Agrobacterium tumefaciens str. C58 circular chrom...	42	1.6
16	gb\|AY519500.1\| Gallus gallus CNR/Pcdh-alpha gene cluster, comple...	42	1.6
17	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	42	1.6
18	emb\|AL731619.3\|OSJN00267 Oryza sativa genomic DNA, chromosome 4,...	42	1.6
19	gb\|AE007869.1\| Agrobacterium tumefaciens str. C58, complete genome	42	1.6
20	gb\|AC090649.4\| Genomic sequence for Mus musculus, clone RP23-361...	42	1.6
21	ref\|NG_004818.1\| Gallus gallus cadherin-related neuronal recepto...	42	1.6
22	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
23	emb\|AL662977.3\|OSJN00176 Oryza sativa genomic DNA, chromosome 4,...	42	1.6
24	gb\|AC008254.7\|AC008254 Drosophila melanogaster, chromosome 3R, r...	42	1.6
25	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	42	1.6
26	gb\|AE003680.4\| Drosophila melanogaster chromosome 3R, section 18...	42	1.6
27	ref\|NM_187618.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.2
28	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	40	6.2
29	gb\|AC128644.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
30	gb\|AC133954.3\| Mus musculus BAC clone RP23-154C17 from chromosom...	40	6.2
31	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	6.2
32	gb\|AC132100.3\| Mus musculus BAC clone RP24-294D10 from chromosom...	40	6.2
33	emb\|AL591785.1\|SME591785 Sinorhizobium meliloti 1021 complete ch...	40	6.2
34	gb\|AC104473.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
35	emb\|CR848714.6\| Wallaby DNA sequence from clone MEKBa-460J13, co...	40	6.2
36	emb\|CR522870.1\| Desulfotalea psychrophila LSv54 chromosome	40	6.2
37	gb\|AC156498.2\| Mus musculus BAC clone RP24-300J13 from chromosom...	40	6.2
38	gb\|AC151605.2\| Emiliania huxleyi clone JGIACCU-13A3, complete se...	40	6.2
39	gb\|U65510.1\|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r...	40	6.2
40	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	6.2
41	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
42	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
43	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	40	6.2
44	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.2
45	gb\|AC104648.2\| Homo sapiens BAC clone RP11-45D4 from 2, complete...	40	6.2
46	dbj\|AP005260.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
47	ref\|XM_316442.2\| Anopheles gambiae str. PEST ENSANGP00000021115 ...	40	6.2
48	ref\|XM_313144.2\| Anopheles gambiae str. PEST ENSANGP00000013219 ...	40	6.2
49	dbj\|AK068454.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
50	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
51	emb\|AL590430.8\| Mouse DNA sequence from clone RP23-384K10 on chr...	40	6.2
52	emb\|AL732513.8\| Mouse DNA sequence from clone RP23-344B24 on chr...	40	6.2
53	dbj\|AB046872.1\| Physcomitrella patens Sig2 mRNA for PpSIG2, comp...	40	6.2
54	dbj\|AB059356.1\| Physcomitrella patens Sig2 gene for PpSIG2, comp...	40	6.2

>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  343 bits (173), Expect = 3e-91
 Identities = 236/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 197 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 256
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 257 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 316
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 317 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 376
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 377 cagggtgacacctttatcaaggtagaggccacagaggtattcttcgctacgaccaagttg 436
           |||||||||||||| | |||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                            
Query: 437 tttcagtccaaggatgc 453
           ||||| |||||||||||
Sbjct: 467 tttcaatccaaggatgc 483

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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  343 bits (173), Expect = 3e-91
 Identities = 236/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 197 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 256
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 257 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 316
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 317 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 376
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 377 cagggtgacacctttatcaaggtagaggccacagaggtattcttcgctacgaccaagttg 436
           |||||||||||||| | |||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                            
Query: 437 tttcagtccaaggatgc 453
           ||||| |||||||||||
Sbjct: 467 tttcaatccaaggatgc 483

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                           
Query: 247     agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 306
               |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893

                                                           
Query: 307     cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 350
               |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 5484894 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 5484937



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                       
Query: 345     aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttatcaaggta 400
               |||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct: 5485026 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 5485081



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 197     gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 248
               |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                         
Query: 396     aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgc 453
               |||| |||||||||||||| || || || ||||||||||||||||| |||||||||||
Sbjct: 5485742 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgc 5485799



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 44       cttcctcctctctcctgttc 63
                ||||||||||||||||||||
Sbjct: 10754361 cttcctcctctctcctgttc 10754380

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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                          
Query: 247    agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 306
              |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874

                                                          
Query: 307    cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 350
              |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 118875 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 118918



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 345    aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttatcaaggta 400
              |||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct: 119007 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 119062



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 197    gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 248
              |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                        
Query: 396    aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgc 453
              |||| |||||||||||||| || || || ||||||||||||||||| |||||||||||
Sbjct: 119723 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgc 119780

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>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 42    ctcttcctcctctctcctgttc 63
             ||||||||||||||||||||||
Sbjct: 22687 ctcttcctcctctctcctgttc 22708

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>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 42    ctcttcctcctctctcctgttc 63
             ||||||||||||||||||||||
Sbjct: 93539 ctcttcctcctctctcctgttc 93518

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>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 42    ctcttcctcctctctcctgttc 63
             ||||||||||||||||||||||
Sbjct: 11821 ctcttcctcctctctcctgttc 11800

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>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete
              sequence
          Length = 178498

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 41     cctcttcctcctctctcctgttcagtcctc 70
              ||||||||||||||||||| || |||||||
Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155

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>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial
            sequence
          Length = 8975

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 281  ggtgccgtcctgcaggaggccc 302
            ||||||||||||||||||||||
Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690

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>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete
              sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 41     cctcttcctcctctctcctgttcagtcctc 70
              ||||||||||||||||||| || |||||||
Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227

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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    tctcctgttcagtcctccctcg 75
             ||||||||||||||||||||||
Sbjct: 60120 tctcctgttcagtcctccctcg 60141

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>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 95  ctcgcgggagctctcgcgccgc 116
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

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>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 95  ctcgcgggagctctcgcgccgc 116
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495

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>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 cgccgccccgctccgccgccg 131
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160

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>gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 115
            of 256 of the complete sequence
          Length = 10144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 304  cgtcttccacgacccgcagcttgatgcgc 332
            |||||||| ||||| ||||||||||||||
Sbjct: 1595 cgtcttccgcgacctgcagcttgatgcgc 1567

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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    ccccgctccgccgccgttctc 136
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 290     ctgcaggaggcccgcgtcttc 310
               |||||||||||||||||||||
Sbjct: 4382506 ctgcaggaggcccgcgtcttc 4382526

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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  cgccgccccgctccgccgccg 131
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886

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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 304     cgtcttccacgacccgcagcttgatgcgc 332
               |||||||| ||||| ||||||||||||||
Sbjct: 1257267 cgtcttccgcgacctgcagcttgatgcgc 1257239

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>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence
          Length = 211611

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    cctcttcctcctctctcctgt 61
             |||||||||||||||||||||
Sbjct: 75898 cctcttcctcctctctcctgt 75878

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>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   ccccgctccgccgccgttctc 136
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 111      cgccgccccgctccgccgccg 131
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976

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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    cgccgccccgctccgccgccg 131
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139

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>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR02G22, complete sequence
          Length = 164982

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 46    tcctcctctctcctgttcagtcctc 70
             |||||||||||||||||| ||||||
Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 137    gcggcatagcggtcgacccgggcgc 161
              ||||||||||||||||| |||||||
Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774

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>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 46     tcctcctctctcctgttcagtcctc 70
              |||||||||||||||||| ||||||
Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261

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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 275 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 330
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 70  gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 125

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    cgtcctgcaggaggcccgcg 305
              ||||||||||||||||||||
Sbjct: 506652 cgtcctgcaggaggcccgcg 506671

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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 120    gctccgccgccgttctcgcggcat 143
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322

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>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ctcttcctcctctctcctgt 61
              ||||||||||||||||||||
Sbjct: 135518 ctcttcctcctctctcctgt 135537

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 275     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 330
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6646031 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6646086

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>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    cctcctctctcctgttcagt 66
             ||||||||||||||||||||
Sbjct: 96813 cctcctctctcctgttcagt 96832

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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   atcgagaagggtgccgtcct 291
             ||||||||||||||||||||
Sbjct: 23174 atcgagaagggtgccgtcct 23155

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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 275   gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 330
             |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 31579 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 31634

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>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence
          Length = 186287

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ctcttcctcctctctcctgt 61
              ||||||||||||||||||||
Sbjct: 156270 ctcttcctcctctctcctgt 156251

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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     cctttatcaaggtagaggcc 406
               ||||||||||||||||||||
Sbjct: 3057751 cctttatcaaggtagaggcc 3057732

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>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete
             sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 396   aggtagaggccacagaggtattct 419
             |||||||||||||||||| |||||
Sbjct: 98490 aggtagaggccacagaggaattct 98513

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>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tcgcgccgccccgctccgcc 127
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295

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>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   gcgccgccccgctccgccgc 129
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     gcgccgccccgctccgccgc 129
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 120     gctccgccgccgttctcgcggcat 143
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 275     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 330
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6645244 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6645299

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     ttcctcggcatcgagaaggg 282
               ||||||||||||||||||||
Sbjct: 1659149 ttcctcggcatcgagaaggg 1659168

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 112     gccgccccgctccgccgccg 131
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322

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>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    ttcctcctctctcctgttca 64
             ||||||||||||||||||||
Sbjct: 47456 ttcctcctctctcctgttca 47475

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>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    cttcctcctctctcctgttc 63
             ||||||||||||||||||||
Sbjct: 83807 cttcctcctctctcctgttc 83826

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>ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115
           (ENSANGG00000018626), partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 cgacccgcagcttgatgcgc 332
           ||||||||||||||||||||
Sbjct: 931 cgacccgcagcttgatgcgc 912

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>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219
           (ENSANGG00000010730), partial mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 272 atcgagaagggtgccgtcctgcag 295
           ||||| ||||||||||||||||||
Sbjct: 657 atcgataagggtgccgtcctgcag 634

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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 275 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 330
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 250 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 305

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 120     gctccgccgccgttctcgcggcat 143
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653

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>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete
             sequence
          Length = 144909

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tcttcctcctctctcctgtt 62
             ||||||||||||||||||||
Sbjct: 38565 tcttcctcctctctcctgtt 38546

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>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete
             sequence
          Length = 209452

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    gcctcttcctcctctctcct 59
             ||||||||||||||||||||
Sbjct: 54386 gcctcttcctcctctctcct 54405

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>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds
          Length = 2207

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgcctcttcctcctctctcc 58
           ||||||||||||||||||||
Sbjct: 918 cgcctcttcctcctctctcc 899

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>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   cgcctcttcctcctctctcc 58
            ||||||||||||||||||||
Sbjct: 1427 cgcctcttcctcctctctcc 1408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,227,443
Number of Sequences: 3902068
Number of extensions: 3227443
Number of successful extensions: 81661
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80833
Number of HSP's gapped (non-prelim): 833
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result