>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 300 GPTKFSVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTP 449
           G  K    I    R + VETG + +QA+G+VM+  G+T V  +   +  P
Sbjct: 1   GQEKHVFTIDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP 50

>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 321 KIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           K   G   + +ETG + RQA+ +VMV+  +T V+ +V
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTV 44

>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 KIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           K   G   I +ETG I RQA+ +VM +  ET V+ +V
Sbjct: 8   KFQYGQHTITLETGVIARQANAAVMASMDETAVFVTV 44

>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 KIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           K   G   + +ETG + RQA+ +VMV   +T V+ +V
Sbjct: 8   KFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTV 44

>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 321 KIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           K   G   + +ETG + RQA+ +VMV+  +T V+ +V
Sbjct: 8   KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV 44

>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 315 SVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTP 449
           +V + +G+R + + +G + R A GS +V  G+T V  +      P
Sbjct: 46  AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP 90

>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 315 SVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTP 449
           +V + +G+R + + +G + R A GS +V  G+T V  +      P
Sbjct: 46  AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKP 90

>PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 701

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 333 GDRHILVETGHIGRQASGSVMVT-DGETIVYCSV 431
           G   + +ETG I RQA+G+V+VT D +  V  +V
Sbjct: 11  GQSTVTLETGRIARQATGAVLVTVDNDVTVLVTV 44

>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 333 GDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           G   + +ETG I RQA+ +VM +  +T V+ +V
Sbjct: 11  GQHTVTLETGAIARQATAAVMASMDDTTVFVTV 43

>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 KIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSV 431
           K   G   I +ETG + RQA+ +VM +  +T V+ +V
Sbjct: 8   KFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTV 44

>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit)
          Length = 1137

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 230 PRTPPSHSARGAMRECRDARRRHA---GKGEP 144
           P  PP  +  G    CRD RRR A   G+G+P
Sbjct: 150 PPPPPRFTLGGGCCSCRDTRRRSAVFGGEGDP 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,796,912
Number of Sequences: 219361
Number of extensions: 612589
Number of successful extensions: 2060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)