ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl41c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476736.1| Oryza sativa (japonica cultivar-group), mRNA 153 6e-34
2dbj|AK065622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 6e-34
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5ref|XM_957326.1| Neurospora crassa OR74A hypothetical protein (N... 50 0.006
6ref|XM_328608.1| Neurospora crassa OR74A hypothetical protein (N... 50 0.006
7ref|XM_465846.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.098
8ref|NM_186863.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.098
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
10dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
11dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
12dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
13dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
16dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
18emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.39
19gb|AC149346.2| Phakopsora pachyrhizi clone JGIAFNA-33E14, comple... 44 0.39
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
21gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genom... 42 1.5
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
23dbj|AK106671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
24dbj|AK062841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
25gb|AF027770.1|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene,... 42 1.5
26gb|U52048.1|SOU52048 Spinacia oleracea polyribonucleotide phopho... 42 1.5
27gb|AF034152.1|AF034152 Mycobacterium smegmatis exochelin gene cl... 42 1.5
28emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584... 42 1.5
29ref|NM_111242.2| Arabidopsis thaliana 3'-5'-exoribonuclease/ RNA... 40 6.1
30ref|NM_104461.2| Arabidopsis thaliana transporter AT1G55840 mRNA... 40 6.1
31ref|XM_467063.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
32gb|AC005571.1| Homo sapiens chromosome 5, BAC clone 24d5 (LBNL H... 40 6.1
33gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.1
34gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
35gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.1
36gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
37gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
38emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.1
39gb|AC122025.3| Mus musculus BAC clone RP24-388G8 from 12, comple... 40 6.1
40gb|AC073521.5| Homo sapiens BAC clone RP11-806J6 from 7, complet... 40 6.1
41gb|DQ087285.1| Burkholderia pseudomallei phage phi52237, complet... 40 6.1
42gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.1
43ref|XM_964912.1| PREDICTED: Tribolium castaneum similar to CG551... 40 6.1
44gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.1
45emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.1
46emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 6.1
47emb|AJ252123.1|ATH252123 Arabidopsis thaliana partial mRNA for p... 40 6.1
48gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 6.1
49gb|AC092952.4| Homo sapiens 3 BAC RP11-332P22 (Roswell Park Canc... 40 6.1
50gb|AE011683.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.1
51gb|AY079108.1| Arabidopsis thaliana At1g55840/F14J16_2 mRNA, com... 40 6.1
52gb|AF419577.1|AF419577 Arabidopsis thaliana At1g55840/F14J16_2 m... 40 6.1
53gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome... 40 6.1
54gb|AC025918.7| Homo sapiens chromosome 15 clone RP11-313H3 map 1... 40 6.1
55tpg|BK000358.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M78 t... 40 6.1
56dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
57dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
58dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
59emb|BX813697.1|CNS0AAK0 Arabidopsis thaliana Full-length cDNA Co... 40 6.1
60gb|AC130371.4| Homo sapiens chromosome 17, clone RP11-1197K16, c... 40 6.1
61gb|AC127518.8| Homo sapiens chromosome 17, clone RP13-629P20, co... 40 6.1
62gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.1
63gb|AF450480.1| Arabidopsis thaliana polynucleotide phosphorylase... 40 6.1
64gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana... 40 6.1
65dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
66dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.1
67dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
68dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
69dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
70dbj|BS000222.1| Pan troglodytes chromosome 22 clone:RP43-111J12,... 40 6.1
71dbj|AK122119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
72dbj|AK099883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
73dbj|AK065446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
74gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
75gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
76emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1
77gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.1 
>ref|XM_476736.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3102

 Score =  153 bits (77), Expect = 6e-34
 Identities = 130/147 (88%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                       
Query: 280 ccgaggaggcgagcagctccggc---ccgaccaagttctccgtgaaaattcccgtcggcg 336
           ||||||||||||||| |||||||   |||||||||||||||  ||| |||||||||||||
Sbjct: 295 ccgaggaggcgagcacctccggcggcccgaccaagttctccacgaagattcccgtcggcg 354

                                                                       
Query: 337 accgccacatattagtggaaacaggacacattgggaggcaagctagtggttctgtaatgg 396
           ||||||||||| | ||||| ||||| ||||| ||||||||||| || | |||||||||||
Sbjct: 355 accgccacatactggtggagacaggccacatagggaggcaagcaagcgcttctgtaatgg 414

                                      
Query: 397 tcacagatggcgaaacaattgtctact 423
           |||| ||||||||||||||||| ||||
Sbjct: 415 tcacggatggcgaaacaattgtttact 441
to top
>dbj|AK065622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031K22, full
           insert sequence
          Length = 3102

 Score =  153 bits (77), Expect = 6e-34
 Identities = 130/147 (88%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                       
Query: 280 ccgaggaggcgagcagctccggc---ccgaccaagttctccgtgaaaattcccgtcggcg 336
           ||||||||||||||| |||||||   |||||||||||||||  ||| |||||||||||||
Sbjct: 295 ccgaggaggcgagcacctccggcggcccgaccaagttctccacgaagattcccgtcggcg 354

                                                                       
Query: 337 accgccacatattagtggaaacaggacacattgggaggcaagctagtggttctgtaatgg 396
           ||||||||||| | ||||| ||||| ||||| ||||||||||| || | |||||||||||
Sbjct: 355 accgccacatactggtggagacaggccacatagggaggcaagcaagcgcttctgtaatgg 414

                                      
Query: 397 tcacagatggcgaaacaattgtctact 423
           |||| ||||||||||||||||| ||||
Sbjct: 415 tcacggatggcgaaacaattgtttact 441
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 61/68 (89%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                           
Query: 280     ccgaggaggcgagcagctccggc---ccgaccaagttctccgtgaaaattcccgtcggcg 336
               ||||||||||||||| |||||||   |||||||||||||||  ||| |||||||||||||
Sbjct: 3688612 ccgaggaggcgagcacctccggcggcccgaccaagttctccacgaagattcccgtcggcg 3688553

                       
Query: 337     accgccac 344
               ||||||||
Sbjct: 3688552 accgccac 3688545



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                           
Query: 351     gtggaaacaggacacattgggaggcaagctagtggttctgtaatggtcacagatggcgaa 410
               ||||| ||||| ||||| ||||||||||| || | ||||||||||||||| |||||||||
Sbjct: 3688217 gtggagacaggccacatagggaggcaagcaagcgcttctgtaatggtcacggatggcgaa 3688158

                  
Query: 411     aca 413
               |||
Sbjct: 3688157 aca 3688155



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 270     gcggtggcggccgaggaggcgagcagc 296
               ||||||||||| |||||||||||||||
Sbjct: 8417861 gcggtggcggcggaggaggcgagcagc 8417835
to top
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0050F10
          Length = 151986

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 61/68 (89%), Gaps = 3/68 (4%)
 Strand = Plus / Minus

                                                                         
Query: 280   ccgaggaggcgagcagctccggc---ccgaccaagttctccgtgaaaattcccgtcggcg 336
             ||||||||||||||| |||||||   |||||||||||||||  ||| |||||||||||||
Sbjct: 32963 ccgaggaggcgagcacctccggcggcccgaccaagttctccacgaagattcccgtcggcg 32904

                     
Query: 337   accgccac 344
             ||||||||
Sbjct: 32903 accgccac 32896



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 351   gtggaaacaggacacattgggaggcaagctagtggttctgtaatggtcacagatggcgaa 410
             ||||| ||||| ||||| ||||||||||| || | ||||||||||||||| |||||||||
Sbjct: 32568 gtggagacaggccacatagggaggcaagcaagcgcttctgtaatggtcacggatggcgaa 32509

                
Query: 411   aca 413
             |||
Sbjct: 32508 aca 32506
to top
>ref|XM_957326.1| Neurospora crassa OR74A hypothetical protein (NCU07903.1) partial
            mRNA
          Length = 1440

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 258  gaggcggtgcccgcggtggcggccg 282
            |||||||||||||||||||||||||
Sbjct: 1220 gaggcggtgcccgcggtggcggccg 1244
to top
>ref|XM_328608.1| Neurospora crassa OR74A hypothetical protein (NCU07903.1) partial
            mRNA
          Length = 1440

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 258  gaggcggtgcccgcggtggcggccg 282
            |||||||||||||||||||||||||
Sbjct: 1220 gaggcggtgcccgcggtggcggccg 1244
to top
>ref|XM_465846.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 495

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 270 gcggtggcggccgaggaggcgagcagc 296
           ||||||||||| |||||||||||||||
Sbjct: 428 gcggtggcggcggaggaggcgagcagc 402
to top
>ref|NM_186863.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 630

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 270 gcggtggcggccgaggaggcgagcagc 296
           ||||||||||| |||||||||||||||
Sbjct: 493 gcggtggcggcggaggaggcgagcagc 467
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 270      gcggtggcggccgaggaggcgagcagc 296
                ||||||||||| |||||||||||||||
Sbjct: 17869987 gcggtggcggcggaggaggcgagcagc 17869961



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       ctcctcctcccggcgccgcc 97
                ||||||||||||||||||||
Sbjct: 26193115 ctcctcctcccggcgccgcc 26193096
to top
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0021G06
          Length = 137678

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 270    gcggtggcggccgaggaggcgagcagc 296
              ||||||||||| |||||||||||||||
Sbjct: 122959 gcggtggcggcggaggaggcgagcagc 122933
to top
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1126_B06
          Length = 99637

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 270  gcggtggcggccgaggaggcgagcagc 296
            ||||||||||| |||||||||||||||
Sbjct: 4620 gcggtggcggcggaggaggcgagcagc 4594
to top
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654A08
          Length = 154812

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 270    gcggtggcggccgaggaggcgagcagc 296
              ||||||||||| |||||||||||||||
Sbjct: 109518 gcggtggcggcggaggaggcgagcagc 109492
to top
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0056I06
          Length = 138653

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 270   gcggtggcggccgaggaggcgagcagc 296
             ||||||||||| |||||||||||||||
Sbjct: 49454 gcggtggcggcggaggaggcgagcagc 49428
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 78       ctcctcctcccggcgccgccac 99
                ||||||||||||||||||||||
Sbjct: 24708968 ctcctcctcccggcgccgccac 24708947



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 282      gaggaggcgagcagctccggc 302
                |||||||||||||||||||||
Sbjct: 27041263 gaggaggcgagcagctccggc 27041283



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       ctcctcctcccggcgccgcc 97
                ||||||||||||||||||||
Sbjct: 10108800 ctcctcctcccggcgccgcc 10108781
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 78       ctcctcctcccggcgccgccac 99
                ||||||||||||||||||||||
Sbjct: 26577445 ctcctcctcccggcgccgccac 26577466
to top
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0460H04
          Length = 166490

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 78     ctcctcctcccggcgccgccac 99
              ||||||||||||||||||||||
Sbjct: 111098 ctcctcctcccggcgccgccac 111119
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 78       ctcctcctcccggcgccgccac 99
                ||||||||||||||||||||||
Sbjct: 24637174 ctcctcctcccggcgccgccac 24637153



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 282      gaggaggcgagcagctccggc 302
                |||||||||||||||||||||
Sbjct: 26966852 gaggaggcgagcagctccggc 26966872



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       ctcctcctcccggcgccgcc 97
                ||||||||||||||||||||
Sbjct: 10108685 ctcctcctcccggcgccgcc 10108666
to top
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140383

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 78    ctcctcctcccggcgccgccac 99
             ||||||||||||||||||||||
Sbjct: 16125 ctcctcctcccggcgccgccac 16104
to top
>gb|AC149346.2| Phakopsora pachyrhizi clone JGIAFNA-33E14, complete sequence
          Length = 38941

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    caccatctcctcctcccggcgc 93
             ||||||||||||||||||||||
Sbjct: 20347 caccatctcctcctcccggcgc 20326
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      gaggaggcgagcagctccggc 302
                |||||||||||||||||||||
Sbjct: 17705256 gaggaggcgagcagctccggc 17705236



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      aggaggcgagcagctccggc 302
                ||||||||||||||||||||
Sbjct: 12494270 aggaggcgagcagctccggc 12494289
to top
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete
             sequence
          Length = 136916

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   gaggaggcgagcagctccggc 302
             |||||||||||||||||||||
Sbjct: 78751 gaggaggcgagcagctccggc 78771
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 282      gaggaggcgagcagctccggc 302
                |||||||||||||||||||||
Sbjct: 17698797 gaggaggcgagcagctccggc 17698777



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      aggaggcgagcagctccggc 302
                ||||||||||||||||||||
Sbjct: 12491033 aggaggcgagcagctccggc 12491052
to top
>dbj|AK106671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A01, full
           insert sequence
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 282 gaggaggcgagcagctccggc 302
           |||||||||||||||||||||
Sbjct: 115 gaggaggcgagcagctccggc 95
to top
>dbj|AK062841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H05, full
           insert sequence
          Length = 823

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 282 gaggaggcgagcagctccggc 302
           |||||||||||||||||||||
Sbjct: 116 gaggaggcgagcagctccggc 96
to top
>gb|AF027770.1|AF027770 Mycobacterium smegmatis FxbA (fxbA) gene, partial cds; FxbB (fxbB),
            FxbC (fxbC), and FxuD (fxtD) genes, complete cds; and
            unknown genes
          Length = 30683

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 266  gcccgcggtggcggccgaggaggcg 290
            |||||||||||||||||||| ||||
Sbjct: 4136 gcccgcggtggcggccgaggcggcg 4112
to top
>gb|U52048.1|SOU52048 Spinacia oleracea polyribonucleotide phophorylase mRNA, partial cds
          Length = 3213

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 357 acaggacacattgggaggcaagctagtggttctgtaatggtcacagatggcgaaacaatt 416
           ||||| || ||||| || |||||||||||| |||| |  || |||||||| ||||| |||
Sbjct: 277 acaggtcatattggtagacaagctagtggtgctgttacagtgacagatggtgaaacgatt 336

                
Query: 417 gtcta 421
           |||||
Sbjct: 337 gtcta 341
to top
>gb|AF034152.1|AF034152 Mycobacterium smegmatis exochelin gene cluster, ExiT (exiT) and FxbB
            (fxbB) genes, complete cds; and FxbC (fxbC) gene, partial
            cds
          Length = 15223

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 266  gcccgcggtggcggccgaggaggcg 290
            |||||||||||||||||||| ||||
Sbjct: 3692 gcccgcggtggcggccgaggcggcg 3668
to top
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 131300

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    gaggaggcgagcagctccggc 302
              |||||||||||||||||||||
Sbjct: 114974 gaggaggcgagcagctccggc 114954
to top
>ref|NM_111242.2| Arabidopsis thaliana 3'-5'-exoribonuclease/ RNA binding / nucleic
           acid binding AT3G03710 mRNA, complete cds
          Length = 3103

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 395 ggtcacagatggcgaaacaattgtctac 422
           |||||||||||| ||||| |||||||||
Sbjct: 345 ggtcacagatggagaaactattgtctac 372
to top
>ref|NM_104461.2| Arabidopsis thaliana transporter AT1G55840 mRNA, complete cds
          Length = 1521

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 408  gaaacaattgtctactgttc 427
            ||||||||||||||||||||
Sbjct: 1075 gaaacaattgtctactgttc 1056
to top
>ref|XM_467063.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1950

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctcctcctcccggcgccgcc 97
           ||||||||||||||||||||
Sbjct: 297 ctcctcctcccggcgccgcc 316
to top
>gb|AC005571.1| Homo sapiens chromosome 5, BAC clone 24d5 (LBNL H108), complete
             sequence
          Length = 62288

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   aggacacattgggaggcaag 378
             ||||||||||||||||||||
Sbjct: 35636 aggacacattgggaggcaag 35655
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cgtggcgccgccgcgcgtcg 180
              ||||||||||||||||||||
Sbjct: 139398 cgtggcgccgccgcgcgtcg 139417
to top
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01,
              complete sequence
          Length = 118799

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    gcggtggcggccgaggaggc 289
              ||||||||||||||||||||
Sbjct: 102141 gcggtggcggccgaggaggc 102122
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cgtggcgccgccgcgcgtcg 180
              ||||||||||||||||||||
Sbjct: 348368 cgtggcgccgccgcgcgtcg 348387
to top
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17,
              complete sequence
          Length = 124139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    gcggtggcggccgaggaggc 289
              ||||||||||||||||||||
Sbjct: 103465 gcggtggcggccgaggaggc 103484
to top
>gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBb0013J02, complete sequence
          Length = 118026

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  gcggtggcggccgaggaggc 289
            ||||||||||||||||||||
Sbjct: 7043 gcggtggcggccgaggaggc 7024
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    cgccgcttcacgcgtggctccccc 153
              |||||||||||||||||| |||||
Sbjct: 678990 cgccgcttcacgcgtggcgccccc 678967
to top
>gb|AC122025.3| Mus musculus BAC clone RP24-388G8 from 12, complete sequence
          Length = 202612

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 410   aacaattgtctactgttctgtttg 433
             ||||| ||||||||||||||||||
Sbjct: 57226 aacaaatgtctactgttctgtttg 57203
to top
>gb|AC073521.5| Homo sapiens BAC clone RP11-806J6 from 7, complete sequence
          Length = 81694

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 418   tctactgttctgtttgcatggctg 441
             |||||| |||||||||||||||||
Sbjct: 74971 tctactcttctgtttgcatggctg 74994
to top
>gb|DQ087285.1| Burkholderia pseudomallei phage phi52237, complete genome
          Length = 37639

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   cgtggcgccgccgcgcgtcg 180
             ||||||||||||||||||||
Sbjct: 35105 cgtggcgccgccgcgcgtcg 35124
to top
>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03,
             from chromosome 3, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   aggaggcgagcagctccggc 302
             ||||||||||||||||||||
Sbjct: 93671 aggaggcgagcagctccggc 93652
to top
>ref|XM_964912.1| PREDICTED: Tribolium castaneum similar to CG5519-PA (LOC658530),
           mRNA
          Length = 1630

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcccgcggtggcggccgagg 285
           ||||||||||||||||||||
Sbjct: 435 gcccgcggtggcggccgagg 454
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 258     gaggcggtgcccgcggtggcggcc 281
               |||||||||||||||| |||||||
Sbjct: 1317997 gaggcggtgcccgcggcggcggcc 1318020
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cgtggcgccgccgcgcgtcg 180
              ||||||||||||||||||||
Sbjct: 123341 cgtggcgccgccgcgcgtcg 123360
to top
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    cgtggcgccgccgcgcgtcg 180
              ||||||||||||||||||||
Sbjct: 131012 cgtggcgccgccgcgcgtcg 130993
to top
>emb|AJ252123.1|ATH252123 Arabidopsis thaliana partial mRNA for putative polynucleotide
           phosphorylase (pnp gene)
          Length = 2766

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 395 ggtcacagatggcgaaacaattgtctac 422
           |||||||||||| ||||| |||||||||
Sbjct: 345 ggtcacagatggagaaactattgtctac 372
to top
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    taatggtcacagatggcgaa 410
              ||||||||||||||||||||
Sbjct: 733849 taatggtcacagatggcgaa 733830
to top
>gb|AC092952.4| Homo sapiens 3 BAC RP11-332P22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168234

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ggaggggtgcgagggataaa 236
             ||||||||||||||||||||
Sbjct: 95731 ggaggggtgcgagggataaa 95712
to top
>gb|AE011683.1| Xanthomonas axonopodis pv. citri str. 306,  section 61 of 469 of the
             complete genome
          Length = 11877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   cgccgcttcacgcgtggctccccc 153
             |||||||||||||||||| |||||
Sbjct: 11478 cgccgcttcacgcgtggccccccc 11455
to top
>gb|AY079108.1| Arabidopsis thaliana At1g55840/F14J16_2 mRNA, complete cds
          Length = 978

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 408 gaaacaattgtctactgttc 427
           ||||||||||||||||||||
Sbjct: 786 gaaacaattgtctactgttc 767
to top
>gb|AF419577.1|AF419577 Arabidopsis thaliana At1g55840/F14J16_2 mRNA, complete cds
          Length = 1498

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 408  gaaacaattgtctactgttc 427
            ||||||||||||||||||||
Sbjct: 1075 gaaacaattgtctactgttc 1056
to top
>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence
          Length = 200974

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 410    aacaattgtctactgttctgtttg 433
              ||||| ||||||||||||||||||
Sbjct: 130845 aacaaatgtctactgttctgtttg 130822
to top
>gb|AC025918.7| Homo sapiens chromosome 15 clone RP11-313H3 map 15q21.3, complete
              sequence
          Length = 187734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    ggaggggtgcgagggataaa 236
              ||||||||||||||||||||
Sbjct: 123064 ggaggggtgcgagggataaa 123083
to top
>tpg|BK000358.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M78 transposase gene,
            complete cds
          Length = 14306

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   gctccaccatctcctcctcc 87
            ||||||||||||||||||||
Sbjct: 2223 gctccaccatctcctcctcc 2204
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       ctcctcctcccggcgccgcc 97
                ||||||||||||||||||||
Sbjct: 20769214 ctcctcctcccggcgccgcc 20769195
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 270      gcggtggcggccgaggaggc 289
                ||||||||||||||||||||
Sbjct: 24820158 gcggtggcggccgaggaggc 24820139



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 270      gcggtggcggccgaggaggc 289
                ||||||||||||||||||||
Sbjct: 21386143 gcggtggcggccgaggaggc 21386162
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       gctccaccatctcctcctcc 87
                ||||||||||||||||||||
Sbjct: 17865518 gctccaccatctcctcctcc 17865499
to top
>emb|BX813697.1|CNS0AAK0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB34ZA01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1239

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 408 gaaacaattgtctactgttc 427
           ||||||||||||||||||||
Sbjct: 903 gaaacaattgtctactgttc 884
to top
>gb|AC130371.4| Homo sapiens chromosome 17, clone RP11-1197K16, complete sequence
          Length = 195613

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   cccgcggtggcggccgagga 286
             ||||||||||||||||||||
Sbjct: 22997 cccgcggtggcggccgagga 22978
to top
>gb|AC127518.8| Homo sapiens chromosome 17, clone RP13-629P20, complete sequence
          Length = 166080

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   cccgcggtggcggccgagga 286
             ||||||||||||||||||||
Sbjct: 14785 cccgcggtggcggccgagga 14766
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 268     ccgcggtggcggccgaggaggcgagcag 295
               |||||| ||||||||||| |||||||||
Sbjct: 1147088 ccgcggcggcggccgaggcggcgagcag 1147061
to top
>gb|AF450480.1| Arabidopsis thaliana polynucleotide phosphorylase mRNA, complete
           cds; nuclear gene for chloroplast product
          Length = 2769

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 395 ggtcacagatggcgaaacaattgtctac 422
           |||||||||||| ||||| |||||||||
Sbjct: 345 ggtcacagatggagaaactattgtctac 372
to top
>gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana BAC F14J16 from chromosome I,
             complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   gaaacaattgtctactgttc 427
             ||||||||||||||||||||
Sbjct: 24419 gaaacaattgtctactgttc 24400
to top
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0455H03
          Length = 175947

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gctccaccatctcctcctcc 87
              ||||||||||||||||||||
Sbjct: 112640 gctccaccatctcctcctcc 112621
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 263    ggtgcccgcggtggcggccgaggaggcg 290
              |||| ||||||||| |||||||||||||
Sbjct: 354326 ggtggccgcggtggaggccgaggaggcg 354353
to top
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0569E11
          Length = 157319

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ctcctcctcccggcgccgcc 97
             ||||||||||||||||||||
Sbjct: 44243 ctcctcctcccggcgccgcc 44224
to top
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0048B08
          Length = 146874

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ctcctcctcccggcgccgcc 97
             ||||||||||||||||||||
Sbjct: 89942 ctcctcctcccggcgccgcc 89923
to top
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0012J10
          Length = 132375

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ctcctcctcccggcgccgcc 97
             ||||||||||||||||||||
Sbjct: 15956 ctcctcctcccggcgccgcc 15937
to top
>dbj|BS000222.1| Pan troglodytes chromosome 22 clone:RP43-111J12, map 22, complete
              sequences
          Length = 189474

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ggaggggtgcgagggataaa 236
              ||||||||||||||||||||
Sbjct: 103201 ggaggggtgcgagggataaa 103182
to top
>dbj|AK122119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128G07, full
           insert sequence
          Length = 1993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 aggaggcgagcagctccggc 302
           ||||||||||||||||||||
Sbjct: 75  aggaggcgagcagctccggc 56
to top
>dbj|AK099883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111P14, full
           insert sequence
          Length = 2109

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 aggaggcgagcagctccggc 302
           ||||||||||||||||||||
Sbjct: 155 aggaggcgagcagctccggc 136
to top
>dbj|AK065446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011E08, full
           insert sequence
          Length = 2338

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 aggaggcgagcagctccggc 302
           ||||||||||||||||||||
Sbjct: 165 aggaggcgagcagctccggc 146
to top
>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08,
              complete sequence
          Length = 148274

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    gcggtggcggccgaggaggc 289
              ||||||||||||||||||||
Sbjct: 146657 gcggtggcggccgaggaggc 146638
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     ggcggtgcccgcggtggcgg 279
               ||||||||||||||||||||
Sbjct: 2939379 ggcggtgcccgcggtggcgg 2939398
to top
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    ctcctcctcccggcgccgcc 97
             ||||||||||||||||||||
Sbjct: 53821 ctcctcctcccggcgccgcc 53840
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 263  ggtgcccgcggtggcggccgaggaggcg 290
            |||| ||||||||| |||||||||||||
Sbjct: 3421 ggtggccgcggtggaggccgaggaggcg 3448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,871,222
Number of Sequences: 3902068
Number of extensions: 2871222
Number of successful extensions: 66393
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64063
Number of HSP's gapped (non-prelim): 2326
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top