ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41b09 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.4 bits (228), Expect = 4e-19 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 423 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.4 bits (228), Expect = 4e-19 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 423 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.4 bits (228), Expect = 4e-19 Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Frame = +1 Query: 115 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITV 291 A + C L++ S + +K DLE DV K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 292 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 423 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYR 106
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 91.7 bits (226), Expect = 7e-19 Identities = 43/99 (43%), Positives = 64/99 (64%) Frame = +1 Query: 127 PCTLLVHFDKGSAAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVL 306 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 307 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLR 423 P ++HTI+KLLL++ EI+ K A G++L EMIL+C R Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYR 104
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 70.1 bits (170), Expect = 2e-12 Identities = 35/99 (35%), Positives = 58/99 (58%) Frame = +1 Query: 130 CTLLVHFDKGSAAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 309 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 310 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRN 426 S + ++KLL Y E+ K + G + EMIL C + RN Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRN 101
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 59.3 bits (142), Expect = 4e-09 Identities = 29/81 (35%), Positives = 52/81 (64%) Frame = +1 Query: 184 KADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 363 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSDEQ-KIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 364 KRDAAGRVLPEMILICQNLRN 426 K G++ EMIL+C +++ Sbjct: 89 KLAEDGKLRHEMILVCNAIQH 109
>MODC_PSEPK (Q88G95) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 363 Score = 32.7 bits (73), Expect = 0.37 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Frame = +1 Query: 40 HLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDV--A 213 HL R N + RR PA R ++D+ C LL G + + A L G + Sbjct: 93 HLSVRGNLTFGWRRVAPAE---RKVSLDQACQLL-----GIGHLLDRRPATLSGGEAQRV 144 Query: 214 GKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLP 393 G A+ + LLL E L L R +LP + +L + + + +D R+ Sbjct: 145 GIARALLSSPRLLLMDEPLAALDSPRKREILPFLERLHDELDIPLIYVSHAQDEVARLAD 204 Query: 394 EMILICQ 414 ++L+ Q Sbjct: 205 HLVLLEQ 211
>SYL_XANAC (Q8PIW4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 880 Score = 32.0 bits (71), Expect = 0.64 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -2 Query: 264 LAIEEEHDGALHGLDLAGDVAALQIRLDLIRHGGGALVEVD*QRARLVHGAGSAVHP 94 ++I EH ALH ++AAL L+ ++HGG + E++ Q R + +AVHP Sbjct: 267 VSIAAEHPLALHAAKSNPELAAL---LETLKHGGVSEAELETQEKRGMATGLTAVHP 320
>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 745 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +1 Query: 193 LEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYL 351 L + AGK+EA+ + +++GE + F VV+ V SE+ I++L+ +YL Sbjct: 42 LNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLV-ASENPEIRRLVHIYL 93
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 30.0 bits (66), Expect = 2.4 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +1 Query: 88 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGET 267 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 268 LPTLFITVVRYVLPSED 318 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 183 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 10 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 29.3 bits (64), Expect = 4.1 Identities = 21/68 (30%), Positives = 34/68 (50%) Frame = +1 Query: 208 VAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRV 387 +A E++ + V LL N + LFI V + H + L+LE++ KRD G + Sbjct: 274 LADSHESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYL 327 Query: 388 LPEMILIC 411 +M+ IC Sbjct: 328 WVQMLWIC 335
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +2 Query: 5 HSPPLPAPRSRSTS------AADPTTD 67 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 Query: 366 ARCRWPRPPGDDPHLPESPQH 428 AR P PPG DP LP+S Q+ Sbjct: 350 ARLGLPSPPGHDPRLPQSRQY 370
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1 Query: 247 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 408 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 7.1 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +1 Query: 118 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGE--TLPTLF-IT 288 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 289 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 381 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>MAUJ_PARDE (P22566) Methylamine utilization protein mauJ| Length = 287 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = -2 Query: 249 EHDGALHGLDLAGDVAALQIRLDLIRHGGGAL------VEVD*QRARLVHGAGSAVH 97 EH L GLDLA +AAL+ D + GG L + + ARL + A A H Sbjct: 211 EHQAGLQGLDLAALIAALRPEHDRLIAPGGLLAALSDDLAAQQRLARLANLADLAAH 267
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 75 CGVSVVGSAAEVDRDLGAGRGGEWL 1 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>MODC_BORPE (Q7VUJ5) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 369 Score = 28.5 bits (62), Expect = 7.1 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Frame = +1 Query: 40 HLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDV--A 213 HL +N RY +R PPA R +++ LL G + + A L G + Sbjct: 100 HLDVLANLRYGMKRVPPAL---RRVDLEQATGLL-----GIGHLLARMPAGLSGGERQRV 151 Query: 214 GKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLP 393 G A+ + LLL E L L + R +LP + +L + + + D R+ Sbjct: 152 GIARALLTSPRLLLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLAD 211 Query: 394 EMILICQ 414 ++L+ Q Sbjct: 212 HLVLLEQ 218
>MODC_BORPA (Q7W1F4) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 369 Score = 28.5 bits (62), Expect = 7.1 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Frame = +1 Query: 40 HLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDV--A 213 HL +N RY +R PPA R +++ LL G + + A L G + Sbjct: 100 HLDVLANLRYGMKRVPPAL---RRVDLEQATGLL-----GIGHLLARMPAGLSGGERQRV 151 Query: 214 GKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLP 393 G A+ + LLL E L L + R +LP + +L + + + D R+ Sbjct: 152 GIARALLTSPRLLLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLAD 211 Query: 394 EMILICQ 414 ++L+ Q Sbjct: 212 HLVLLEQ 218
>MODC_BORBR (Q7WP62) Molybdenum import ATP-binding protein modC (EC 3.6.3.29)| Length = 369 Score = 28.5 bits (62), Expect = 7.1 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Frame = +1 Query: 40 HLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDV--A 213 HL +N RY +R PPA R +++ LL G + + A L G + Sbjct: 100 HLDVLANLRYGMKRVPPAL---RRVDLEQATGLL-----GIGHLLARMPAGLSGGERQRV 151 Query: 214 GKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLP 393 G A+ + LLL E L L + R +LP + +L + + + D R+ Sbjct: 152 GIARALLTSPRLLLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLAD 211 Query: 394 EMILICQ 414 ++L+ Q Sbjct: 212 HLVLLEQ 218
>RL4_LACJO (P61064) 50S ribosomal protein L4| Length = 205 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = +1 Query: 163 AAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLL 342 A E+KA L+ ++V+GKV + + L+G+ LP + + V + + QKL+L Sbjct: 133 APKTKELKAILDNANVSGKVLVVSDDKNVQLSGKNLPKVKVVPVNGLNVVDAVDYQKLVL 192
>ARLY_MYCTU (P0A4Z0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 470 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = -2 Query: 273 RQGLAIEEEHDGALHGLD-LAGDVA 202 R GL EE+ DG L GLD LA DVA Sbjct: 51 RAGLLTEEQRDGLLAGLDSLAQDVA 75
>ARLY_MYCBO (P0A4Z1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 470 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = -2 Query: 273 RQGLAIEEEHDGALHGLD-LAGDVA 202 R GL EE+ DG L GLD LA DVA Sbjct: 51 RAGLLTEEQRDGLLAGLDSLAQDVA 75
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 4 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 99 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>FREM2_HUMAN (Q5SZK8) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) Length = 3169 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +1 Query: 247 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 408 L L+ T L + + Y PSED ++L L LE++D AA M+++ Sbjct: 378 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEVVDLEGAASDPFAFMVVV 431
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 190 DLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 Query: 5 HSPPLPAPRSRSTSAADPTTDTPHAVALR 91 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 28.1 bits (61), Expect = 9.2 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Frame = +1 Query: 151 DKG---SAAMANEIKADLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DKG + + + + LE +D A + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 322 TIQKLLL--LYLEIIDKRDAAGR 384 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +1 Query: 190 DLEGSDVAGKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 321 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -2 Query: 117 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 10 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,848,244 Number of Sequences: 219361 Number of extensions: 907241 Number of successful extensions: 3948 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3944 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
