>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 98   EATPSEGRGVETLGGGVPAPPADHGGWGSG 9
            +A PS   G ++ GGG PAPPA   G G+G
Sbjct: 1218 DAYPSSLHGRKSEGGGTPAPPAPPSGPGTG 1247

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X|
            receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 274  AAGQRPGHPGQPREGAQAQGRLHRVRHADRPQEAPRDRVRAR 399
            AA   PGHP      A A+    R R  +R +E  R+R R R
Sbjct: 1701 AASLSPGHPTHLAAAASAEREREREREKERERERERERERER 1742

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 280  GQRPGHPGQPREGAQAQGRLHRVRHADRPQEAPRDRVRAR 399
            G R    G PR GA  + R HR  H    +E P D+   R
Sbjct: 939  GSRESRSGSPRTGADGEHRRHRA-HRRPGEEGPEDKAERR 977

>ATG9_EMENI (Q5B6U6) Autophagy-related protein 9|
          Length = 820

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
 Frame = +2

Query: 50  RRRLGFPPPAPPMESL---------PRKRKGARSLAGSLHDDS 151
           R+RLG PPPAP  ES+           +R   R  +G LH +S
Sbjct: 713 RQRLGRPPPAPVSESIIDDNEPSIAAARRPAPRRKSGQLHTNS 755

>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2318

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  RARRRLGFPPPAPPMESLP 100
           R RR +  PPP PPM +LP
Sbjct: 10  RRRRLMALPPPPPPMRALP 28

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2319

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  RARRRLGFPPPAPPMESLP 100
           R RR +  PPP PPM +LP
Sbjct: 10  RRRRLMALPPPPPPMRALP 28

>IE62_VZVD (P09310) Transcriptional transactivator IE62 (Immediate-early|
           protein 62) (IE62)
          Length = 1310

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 2   PTFPIPNPHDPQEARARRRLGFPPPAPPMESLPRKRKGARSLAGSLHD 145
           PT P     DPQ + A R L   PP   + + PRKRK     + SL D
Sbjct: 650 PTTPATQAPDPQPSAAARSLSVCPPDDRLRT-PRKRKSQPVESRSLLD 696

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 24.6 bits (52), Expect(2) = 2.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 17  PNPHDPQEARARRRLGFPPPAPP 85
           P P  P     R   G PPP PP
Sbjct: 523 PGPPAPTSPNGRPMQGGPPPPPP 545



 Score = 23.1 bits (48), Expect(2) = 2.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 68  PPPAPPMESLP 100
           PPP PP  SLP
Sbjct: 549 PPPGPPQMSLP 559

>GDBX_WHEAT (P21292) Gamma-gliadin precursor|
          Length = 302

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 2   PTFPIPNPHDPQEARARRRLGFPPPAPPMESLPRKRKGA 118
           P  P P    PQ+   + +  FP P  P +S P++++ A
Sbjct: 121 PQQPFPQSQQPQQPFPQPQQQFPQPQQPQQSFPQQQQPA 159

>NCKX4_MOUSE (Q8CGQ8) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4)
          Length = 605

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPP 85
           P+ NP DPQ+ + ++    PPP PP
Sbjct: 363 PVENPEDPQQGQEQQ----PPPQPP 383

>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 2   PTFPIPNPHDPQEARARRRLGFPPPAPPMESLPRKRKGARSLAGSLH 142
           P+ P P P +P+E      +  P P     SLP  +  AR +A  LH
Sbjct: 219 PSLPAPGPPEPEE----EPIPEPQPTIQASSLPPPQDSARLMAWILH 261

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRL------GFPPPAPP 85
           P P+P  P   R RR+L      G PPP PP
Sbjct: 728 PAPSPAAPVRTRRRRKLYELHAAGAPPPPPP 758

>HISX_COREF (Q8FNZ0) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 451

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 95  ATPSEGRGVETLGGGVPAPPADHGGW 18
           A P++  GV TL    P P ADHGGW
Sbjct: 145 AVPAQEAGVGTLVVASP-PQADHGGW 169

>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein|
          Length = 583

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 357 RVADSMQPTLRLSPLPGLSGVARPLAGG 274
           R A   Q +L+ +P+PG S V +P  GG
Sbjct: 303 RTAQEEQDSLKATPVPGFSTVYKPKTGG 330

>TRPS1_MOUSE (Q925H1) Zinc finger transcription factor Trps1|
          Length = 1281

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 402 SPSSYSVSRRFLRPIRVADSMQPTLRLSPLPGLSGVARPLAGGAVMT 262
           SPS    S   L P+  +     TLR SP    + +ARP+ G AV T
Sbjct: 803 SPSYTQASLGLLTPVSSSQEQTKTLRDSPNVEAAHLARPMYGLAVDT 849

>NCKX4_HUMAN (Q8NFF2) Sodium/potassium/calcium exchanger 4 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 4) (Solute carrier
           family 24 member 4)
          Length = 605

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPP 85
           P+ NP DPQ+ + ++    PPP PP
Sbjct: 363 PVENPEDPQQNQEQQ----PPPQPP 383

>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
           domain-containing protein 1A) (SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin subfamily F member 1) (SWI-SNF complex protein
           p270) (B120) (SWI-like pr
          Length = 2285

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 271 GAAGQRPGHPGQPREGAQAQGRLHRVRHADRP 366
           GA GQ  G PG P  G    GR+      +RP
Sbjct: 836 GAGGQMHGQPGIPPYGTLPPGRMSHASMGNRP 867

>Y046_UREPA (Q9PR99) Hypothetical protein UU046|
          Length = 791

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPPME 91
           PIP P  P E + +  L  P P PP E
Sbjct: 130 PIPQPTPPVETKPKEELLPPSPPPPKE 156

>TRPS1_HUMAN (Q9UHF7) Zinc finger transcription factor Trps1 (Zinc finger|
           protein GC79) (Tricho-rhino-phalangeal syndrome type I
           protein)
          Length = 1281

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 402 SPSSYSVSRRFLRPIRVADSMQPTLRLSPLPGLSGVARPLAGGAVMT 262
           SPS    S   L P+        TLR SP    + +ARP+ G AV T
Sbjct: 803 SPSYTQASLGLLTPVSGTQEQTKTLRDSPNVEAAHLARPIYGLAVET 849

>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 2   PTFPIPNPHDPQEARARRRLGFPPPAPP 85
           P  P P+PH    A        PPPAPP
Sbjct: 282 PPPPPPHPHPHPHAHHLHAAAAPPPAPP 309

>Y4526_NOCFA (Q5YR14) UPF0182 protein nfa45260|
          Length = 995

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 269  TAPPASGRATPDSPGRGLKRKVGCIESATRIG 364
            T PP +G A  D+    L RK+  + +A R G
Sbjct: 940  TTPPPTGSAAKDAAAAELDRKIEAVRNAMRSG 971

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 11   PIPNPHDPQEARARRRLGFPPPAPPMESL 97
            P   PH  +  RA     FPPPAP   SL
Sbjct: 1231 PAAAPHHHRHRRAAGGWDFPPPAPTSRSL 1259

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 11  PIPN-PHDPQEARARRRLGFPPPAPPMESLPR 103
           P P  P  P +A     LG PPP PPM   PR
Sbjct: 691 PAPQAPPPPPKALYPGALGRPPPMPPMNFDPR 722

>HXA10_MOUSE (P31310) Homeobox protein Hox-A10 (Hox-1.8)|
          Length = 399

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 17  PNPHDPQEARARRRLGFPPPAPPMESLPRKRKGARSLAGSLHDDSA 154
           P P  PQ  + +++   PPP PP    P+ +  + S A ++ ++S+
Sbjct: 117 PPPPQPQPQQQQQQ---PPPPPPQPPQPQPQATSCSFAQNIKEESS 159

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 2   PTFPIPNPHDPQEARARRRLGFPPPAPPMESLPRK 106
           P  P P P  P      ++   PPP PP  S+P++
Sbjct: 754 PQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQ 788

>LGT_ANASP (Q8YN71) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 283

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 396 SSYSVSRRFLRPIRVADSMQPTLRLSPLPGLSGVARPLAG 277
           ++YS+ R ++  +R    M   LR++ +  L+G+A  LAG
Sbjct: 221 ATYSLGRLWIEGLRTDSLMLGPLRIAQVVSLTGIALGLAG 260

>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPPMESLPRK 106
           P P P  P E       G PPP PPM + P K
Sbjct: 534 PPPPPPAPIEGGG----GIPPPPPPMSASPSK 561

>BFSP1_RAT (Q02435) Filensin (Beaded filament structural protein 1) (Lens|
           fiber cell beaded-filament structural protein CP 94)
           (CP94) (Fragment)
          Length = 617

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 265 HDGAAGQRPGHPGQPREGAQAQGRLHRVRHADRPQEAPRDRVRAR 399
           HDG     PG P  P E  Q   +     H++  Q   ++ +RA+
Sbjct: 501 HDGHVEPSPGQPMPPVENGQGVPQGREGAHSNHQQVTDKNGIRAK 545

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 11  PIPN-PHDPQEARARRRLGFPPPAPPMESLPR 103
           P P  P  P +A     LG PPP PPM   PR
Sbjct: 692 PAPQAPPPPPKALYPGALGRPPPMPPMNFDPR 723

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 11  PIPN-PHDPQEARARRRLGFPPPAPPMESLPR 103
           P P  P  P +A     LG PPP PPM   PR
Sbjct: 691 PAPQAPPPPPKALYPGALGRPPPMPPMNFDPR 722

>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Rap1-GTP-interacting adapter molecule) (RIAM)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 73) (Retinoic ac
          Length = 666

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 95  ATPSEGRGVETLGGGVPAPPAD 30
           ATP + +G  T GGG+PAPP D
Sbjct: 533 ATPLKAKG--TGGGGLPAPPDD 552

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 11  PIPN-PHDPQEARARRRLGFPPPAPPMESLPR 103
           P P  P  P +A     LG PPP PPM   PR
Sbjct: 691 PAPQAPPPPPKALYPGALGRPPPMPPMNFDPR 722

>Y044_UREPA (Q9PRA1) Hypothetical protein UU044|
          Length = 782

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPPME 91
           PIP P  P E + +  L  P P PP E
Sbjct: 126 PIPQPAPPIETKPKEELLPPNPPPPKE 152

>SECD_MYCTU (Q50634) Protein-export membrane protein secD|
          Length = 573

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 11  PIPNPHDPQEARARRRLGFPPPAPPMES 94
           P P P DP  +        PPPAPP E+
Sbjct: 168 PRPYPQDPAPSPNPTSPASPPPAPPAEA 195

>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)|
           (Cartilage-derived morphogenetic protein 2) (CDMP-2)
           (Fragment)
          Length = 436

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 298 PGQPREGAQAQGRLHRVRHADRPQEAPRDR 387
           P  PRE A A+  L R     RPQE P+ R
Sbjct: 21  PRAPRENATAREPLDRQEPPPRPQEEPQRR 50

>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting|
           protein) (Signal-integrating protein)
          Length = 560

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 399 PSSYSVSRRFLRPIRVADSMQPTLRLSPLPGLSG 298
           PS+ S+SRR L  + V+++  P+   SP PG  G
Sbjct: 296 PSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKG 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,665,103
Number of Sequences: 219361
Number of extensions: 556414
Number of successful extensions: 3016
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2995
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)