ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41b06 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 74.7 bits (182), Expect = 5e-14 Identities = 39/53 (73%), Positives = 39/53 (73%) Frame = +3 Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAXSGSGDFLRPHGGGASGVSRI 314 MTTDQPVISL LFAPAFAVA SGSGDFLRPHGGGASGVSRI Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRI 53
>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC| 3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase) (CGS-PDE) (cGSPDE) Length = 941 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 11 RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151 RSQ P P E +++ FL+ P PP PC S + AL+ G++ Sbjct: 12 RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 PILETP +PPP PEP Sbjct: 701 PILETPISPPPEANCTDPEP 720
>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)| (p46Eg265) Length = 407 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 5 GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97 G Q + + P+EEGKKK L DF G P Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 313 ILETPEAPPPCGRRKSPEPEXATAKAG 233 + + P APPP G SP P TA+ G Sbjct: 1132 LTQVPLAPPPPGAPPSPAPARFTARGG 1158
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1 Query: 313 ILETPEAPPPCGRRKSPEPEXATAKAG 233 + + P APPP G SP P TA+ G Sbjct: 1135 LTQVPLAPPPPGAPPSPAPARFTARGG 1161
>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)| Length = 971 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 38 PREEGKKKLGFLRDFLPGAPPIPCRSSC 121 P E G++ F+R PGAPP P + C Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369
>PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)| (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK) (CDC42/RAC effector kinase PAK-A) Length = 545 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 20 TEPNPPPREEGKKKLGFLRDFLPG 91 ++P PP EE KKK F R LPG Sbjct: 38 SKPLPPNPEEKKKKDRFYRSILPG 61
>PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)| (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK) Length = 545 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 20 TEPNPPPREEGKKKLGFLRDFLPG 91 ++P PP EE KKK F R LPG Sbjct: 38 SKPLPPNPEEKKKKDRFYRSILPG 61
>SPR2G_HUMAN (Q9BYE4) Small proline-rich protein 2G (SPR-2G)| Length = 73 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 P+ TP+ P PC K PEP Sbjct: 16 PVCPTPKCPEPCPPPKCPEP 35
>SPR2E_HUMAN (P22531) Small proline-rich protein 2E (SPR-2E) (Small proline-rich| protein II) (SPR-II) Length = 72 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 P+ TP+ P PC K PEP Sbjct: 16 PVCPTPKCPEPCPPPKCPEP 35
>SPR2D_HUMAN (P22532) Small proline-rich protein 2D (SPR-2D) (Small proline-rich| protein II) (SPR-II) Length = 72 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 P+ TP+ P PC K PEP Sbjct: 16 PVCPTPKCPEPCPPPKCPEP 35
>SPR2B_HUMAN (P35325) Small proline-rich protein 2B (SPR-2B)| Length = 72 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 P+ TP+ P PC K PEP Sbjct: 16 PVCPTPKCPEPCPPPKCPEP 35
>SPR2A_HUMAN (P35326) Small proline-rich protein 2A (SPR-2A) (2-1)| Length = 72 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 316 PILETPEAPPPCGRRKSPEP 257 P+ TP+ P PC K PEP Sbjct: 16 PVCPTPKCPEPCPPPKCPEP 35
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2 Query: 174 LAGLSSWLRVPNPTKAPR 121 LAGL++W R+P+ T APR Sbjct: 83 LAGLAAWSRLPSRTGAPR 100
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -1 Query: 307 ETPEAPPPCGRRKSPEP 257 E PE+PPP R SPEP Sbjct: 1094 EEPESPPPPPRSPSPEP 1110
>CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8)| Length = 903 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +2 Query: 74 RDFLPGAPPIPCRSS 118 RD LPGAPP+ C SS Sbjct: 620 RDELPGAPPVLCSSS 634
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -1 Query: 307 ETPEAPPPCGRRKSPEP 257 E PE+PPP R SPEP Sbjct: 1102 EEPESPPPPPRSPSPEP 1118
>RELB_MOUSE (Q04863) Transcription factor RelB| Length = 558 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 2 LGERSQTEPNPPPREEGKKKLGFLRDFLPG 91 LGE S ++P+ + KKK FL FLPG Sbjct: 397 LGELSSSDPHGIESKRRKKKPVFLDHFLPG 426
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -1 Query: 307 ETPEAPPPCGRRKSPEP 257 E PE+PPP R SPEP Sbjct: 1094 EEPESPPPPPRSPSPEP 1110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,381,368 Number of Sequences: 219361 Number of extensions: 518152 Number of successful extensions: 2450 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2448 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
