ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 73 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 137 bits (69), Expect = 2e-29 Identities = 90/96 (93%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 282 cacggcggcggcgcc-tccggcgtctccaggattgg 316 ||||||||||||||| ||||| ||||||||||||| Sbjct: 210 cacggcggcggcgccttccgggctctccaggattgg 245
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 184 bits (93), Expect = 1e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 73 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117 Score = 167 bits (84), Expect = 3e-38 Identities = 92/95 (96%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 282 cacggcggcggcgcctccggcgtctccaggattgg 316 ||||||||||||||||||||||||||||||||||| Sbjct: 210 cacggcggcggcgcctccggcgtctccaggattgg 244
>ref|XM_473052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 130 cacgtcggcggcgc 143
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Minus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 47821 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 47762 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 47761 cacgtcggcggcgc 47748
>gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic initiation factor-like protein mRNA, complete cds Length = 2379 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 130 cacgtcggcggcgc 143
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Minus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 24927236 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 24927177 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 24927176 cacgtcggcggcgc 24927163
>emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5672 Length = 2558 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256
>emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5673 Length = 2533 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256
>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5681 Length = 2699 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256
>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Gigante Length = 2599 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 80 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 139 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 140 cacgtcggcggcgc 153
>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar IR64 Length = 2599 Score = 85.7 bits (43), Expect = 8e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct: 73 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 132 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 133 cacgtcggcggcgc 146
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 81.8 bits (41), Expect = 1e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 232 cccccgccttcgccgtcgccgnctccggctccggcgacttcctccgcccgcacggcggcg 291 ||||||||||||||| ||||| |||||||||||||||||| |||||| | |||| ||||| Sbjct: 55312 cccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcccacgtcggcg 55253 Query: 292 gcgc 295 |||| Sbjct: 55252 gcgc 55249
>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full insert sequence Length = 2907 Score = 54.0 bits (27), Expect = 3e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 250 ccgnctccggctccggcgacttcctccgcccgcacggcggcggcgc 295 ||| |||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 139 ccgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 184
>gb|AF345522.1| TT virus isolate TCHN-E Orf2 and Orf1 genes, complete cds Length = 3288 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 cggcggcgcctccggcgtctcca 309 ||||||||||||||||||||||| Sbjct: 547 cggcggcgcctccggcgtctcca 525
>gb|AF315076.1|AF315076 TTV-like virus DXL1 unknown genes Length = 3285 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 cggcggcgcctccggcgtctcca 309 ||||||||||||||||||||||| Sbjct: 541 cggcggcgcctccggcgtctcca 519
>dbj|AB158460.1| Streptomyces halstedii hlsA, hlsB, hlsC genes for type I polyketide synthase, type I polyketide synthase, type I polyketide synthase, complete and partial cds Length = 45102 Score = 46.1 bits (23), Expect = 0.067 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 cccgcacggcggcggcgcctccggcgt 304 |||||| |||||||||||||||||||| Sbjct: 43234 cccgcagggcggcggcgcctccggcgt 43208
>ref|XM_466679.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 24093957 cgacttcctccgcccgcgcggcggcg 24093932
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 52698 cgacttcctccgcccgcgcggcggcg 52673
>dbj|AK072083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118N03, full insert sequence Length = 3014 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>ref|XM_483426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 683 cggcggcggcgcctccggcgt 703
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 ttcgccgtcgccgnctccggctccggcg 267 ||||||||||||| |||||||| ||||| Sbjct: 1859 ttcgccgtcgccgcctccggctgcggcg 1832
>ref|NM_183759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 794 gcccgcacggcgccggcgccgccggcgtc 822
>gb|AY016020.1| Gallus gallus alpha globin gene cluster, complete sequence Length = 103190 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ctccgcccgcacggcggcggc 293 ||||||||||||||||||||| Sbjct: 101622 ctccgcccgcacggcggcggc 101602
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 acggcggcggcgcctccggcg 303 ||||||||||||||||||||| Sbjct: 41219 acggcggcggcgcctccggcg 41239
>tpg|BK000941.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M333, complete sequence Length = 14620 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 10383 gcccgcacggcgccggcgccgccggcgtc 10411
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 26154769 cggcggcggcgcctccggcgt 26154789 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgccgnctccggctccggcg 267 ||||||||||||| |||||||| ||||| Sbjct: 25924211 ttcgccgtcgccgcctccggctgcggcg 25924238
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 12075305 gcccgcacggcgccggcgccgccggcgtc 12075333 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 29716165 ccgcacggtggcggcgcctccggc 29716142
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gcccccgccttcgccgtcgccgnctccg 258 |||| ||||||||||||||||| ||||| Sbjct: 7733336 gccctcgccttcgccgtcgccgcctccg 7733363
>gb|AC172304.2| Gallus gallus BAC clone CH261-75C12 from chromosome ul, complete sequence Length = 227366 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctccgcccgcacggcggcggc 293 ||||||||||||||||||||| Sbjct: 38521 ctccgcccgcacggcggcggc 38541
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 42245 gcccgcacggcgccggcgccgccggcgtc 42273
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 120969 gcccgcacggcgccggcgccgccggcgtc 120997
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgccgnctccggctccggcg 267 ||||||||||||| |||||||| ||||| Sbjct: 109998 ttcgccgtcgccgcctccggctgcggcg 110025
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 98700 cggcggcggcgcctccggcgt 98720
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgccgnctccggctccggcg 267 ||||||||||||| |||||||| ||||| Sbjct: 9088 ttcgccgtcgccgcctccggctgcggcg 9115
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 42.1 bits (21), Expect = 1.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 ttcgccgtcgccgnctccggctccggcg 267 ||||||||||||| |||||||| ||||| Sbjct: 2020 ttcgccgtcgccgcctccggctgcggcg 1993
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 tccgcccgcacggcggcggcgcctc 298 ||||||||||||||| ||||||||| Sbjct: 3929248 tccgcccgcacggcgccggcgcctc 3929272
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcccgcacggcggcggcgcc 296 |||||||||||||||||||| Sbjct: 17207 gcccgcacggcggcggcgcc 17188
>ref|XM_470043.1| Oryza sativa (japonica cultivar-group), mRNA Length = 903 Score = 40.1 bits (20), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 239 cttcgccgtcgccgnctccggct 261 |||||||||||||| |||||||| Sbjct: 294 cttcgccgtcgccgtctccggct 272
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgcccgcacggcggcggcgc 295 |||||||||||||||||||| Sbjct: 2776750 cgcccgcacggcggcggcgc 2776731
>ref|NM_191743.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 334 ccgcacggtggcggcgcctccggc 357
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 239 cttcgccgtcgccgnctccggct 261 |||||||||||||| |||||||| Sbjct: 33493603 cttcgccgtcgccgtctccggct 33493625 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 31753705 cttcctccgcccgcacggcg 31753686
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete sequence Length = 41693 Score = 40.1 bits (20), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 239 cttcgccgtcgccgnctccggct 261 |||||||||||||| |||||||| Sbjct: 22792 cttcgccgtcgccgtctccggct 22814
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gacagaccagccagtgatca 180 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 78931 cttcctccgcccgcacggcg 78912
>emb|AJ518946.2|SSP518946 Sinorhizobium sp. BR816 nodulation gene cluster nodD1, nodE, nodF, nodA, nodB, nodC, nodS, nodU, nodI, nodJ, orf350, nodH, nodP2, nodQ2 genes and orf116, orf113 and orf352, strain BR816 Length = 18521 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cgcctccggcgtctccaggattgg 316 ||||||| |||||||||||||||| Sbjct: 11586 cgcctccagcgtctccaggattgg 11563
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gacagaccagccagtgatca 180 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cggcggcggcgcctccggcg 303 |||||||||||||||||||| Sbjct: 2486153 cggcggcggcgcctccggcg 2486134
>gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of the complete genome Length = 12370 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cccgcacggcggcggcgcct 297 |||||||||||||||||||| Sbjct: 5532 cccgcacggcggcggcgcct 5513
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcggcgcctccggcgt 304 |||||||||||||||||||| Sbjct: 87682 ggcggcggcgcctccggcgt 87701
>tpg|BK005062.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 59 (WRKY59) gene, complete cds Length = 1422 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 127 ccgcacggtggcggcgcctccggc 150
>tpg|BK005029.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 26 (WRKY26) gene, complete cds Length = 1682 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 118 ccgcacggtggcggcgcctccggc 141
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cccgcacggcggcggcgcctccggcgtc 305 ||||||||||||||||| | |||||||| Sbjct: 3333763 cccgcacggcggcggcggccccggcgtc 3333790
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 40.1 bits (20), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 239 cttcgccgtcgccgnctccggct 261 |||||||||||||| |||||||| Sbjct: 4546 cttcgccgtcgccgtctccggct 4524
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 239 cttcgccgtcgccgnctccggct 261 |||||||||||||| |||||||| Sbjct: 33584075 cttcgccgtcgccgtctccggct 33584097 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 31844221 cttcctccgcccgcacggcg 31844202
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 45896 ccgcacggtggcggcgcctccggc 45873
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ccgcccgcacggcggcggcg 294 |||||||||||||||||||| Sbjct: 6121974 ccgcccgcacggcggcggcg 6121955
>dbj|AK108555.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E10, full insert sequence Length = 1193 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 158 ccgcacggtggcggcgcctccggc 181
>dbj|AB059642.1| Perilla frutescens mRNA for putative regulatory protein in anthocyanin biosynthesis, complete cds Length = 1410 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctccggcgacttcctccgcc 279 |||||||||||||||||||| Sbjct: 317 ctccggcgacttcctccgcc 336
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ttgcccccgccttcgccgtcgccg 252 |||||| ||||||||||||||||| Sbjct: 1991866 ttgccctcgccttcgccgtcgccg 1991889
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cgcacggcggcggcgcctccggcg 303 |||||||||||||||| ||||||| Sbjct: 2746561 cgcacggcggcggcgcgtccggcg 2746584
>gb|AY870609.1| Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds Length = 931 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 134 ccgcacggtggcggcgcctccggc 157 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,001,236 Number of Sequences: 3902068 Number of extensions: 2001236 Number of successful extensions: 40510 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39542 Number of HSP's gapped (non-prelim): 968 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
