ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41a08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3793 Score = 452 bits (228), Expect = e-124 Identities = 297/320 (92%) Strand = Plus / Plus Query: 1 catctgttgggctagaaatccgagttgtcggcaatgacagcggcgaaaaggtttcaattt 60 |||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 600 catctgttggtctggaaatccgggttgtcggcaatgacagcggcgaaaaggtgtcaattt 659 Query: 61 tggcgggaacacttgctcgacttgatagagaagcgcctcactacaagaaggatgggtaca 120 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 660 tggcgggaacacttgctcgacttgatagagaagcaccttactacaagaaggatgggtaca 719 Query: 121 atgatttcaacacattctatatgcaggctgcatctggaactaaaggtggctctagtggtt 180 | ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 720 acgatttcaacacattctacatgcaggctgcatctggtaccaaaggtggctctagtggtt 779 Query: 181 ccccagttgttgattgccaaggaagagctgttgccctgaatgccggaagcaaatcttcca 240 |||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 780 cccctgttgttgattgtcaaggaagagctgtcgccctgaatgctggaagtaaatcttcca 839 Query: 241 gtgcttctgccttcttccttccattagaacgtgttgttagggcactgaatttgatacgtg 300 |||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 840 gtgcttctgcgtttttccttccattagaacgtgttgttagggcacttaatctgatacgtg 899 Query: 301 attgttgggatgcatttggt 320 | ||||||| || |||||| Sbjct: 900 acagttgggaagcttttggt 919
>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full insert sequence Length = 3793 Score = 452 bits (228), Expect = e-124 Identities = 297/320 (92%) Strand = Plus / Plus Query: 1 catctgttgggctagaaatccgagttgtcggcaatgacagcggcgaaaaggtttcaattt 60 |||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 600 catctgttggtctggaaatccgggttgtcggcaatgacagcggcgaaaaggtgtcaattt 659 Query: 61 tggcgggaacacttgctcgacttgatagagaagcgcctcactacaagaaggatgggtaca 120 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 660 tggcgggaacacttgctcgacttgatagagaagcaccttactacaagaaggatgggtaca 719 Query: 121 atgatttcaacacattctatatgcaggctgcatctggaactaaaggtggctctagtggtt 180 | ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 720 acgatttcaacacattctacatgcaggctgcatctggtaccaaaggtggctctagtggtt 779 Query: 181 ccccagttgttgattgccaaggaagagctgttgccctgaatgccggaagcaaatcttcca 240 |||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 780 cccctgttgttgattgtcaaggaagagctgtcgccctgaatgctggaagtaaatcttcca 839 Query: 241 gtgcttctgccttcttccttccattagaacgtgttgttagggcactgaatttgatacgtg 300 |||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 840 gtgcttctgcgtttttccttccattagaacgtgttgttagggcacttaatctgatacgtg 899 Query: 301 attgttgggatgcatttggt 320 | ||||||| || |||||| Sbjct: 900 acagttgggaagcttttggt 919
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 186 bits (94), Expect = 3e-44 Identities = 121/130 (93%) Strand = Plus / Minus Query: 145 aggctgcatctggaactaaaggtggctctagtggttccccagttgttgattgccaaggaa 204 ||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 29510977 aggctgcatctggtaccaaaggtggctctagtggttcccctgttgttgattgtcaaggaa 29510918 Query: 205 gagctgttgccctgaatgccggaagcaaatcttccagtgcttctgccttcttccttccat 264 ||||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||| Sbjct: 29510917 gagctgtcgccctgaatgctggaagtaaatcttccagtgcttctgcgtttttccttccat 29510858 Query: 265 tagaacgtgt 274 |||||||||| Sbjct: 29510857 tagaacgtgt 29510848 Score = 99.6 bits (50), Expect = 5e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 49 aggtttcaattttggcgggaacacttgctcgacttgatagagaagcgcctcactacaaga 108 |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 29512252 aggtgtcaattttggcgggaacacttgctcgacttgatagagaagcaccttactacaaga 29512193 Query: 109 ag 110 || Sbjct: 29512192 ag 29512191 Score = 81.8 bits (41), Expect = 1e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 1 catctgttgggctagaaatccgagttgtcggcaatgacagcggcgaaaaggtt 53 |||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 29513343 catctgttggtctggaaatccgggttgtcggcaatgacagcggcgaaaaggtt 29513291 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 110 ggatgggtacaatgatttcaacacattctatatgcagg 147 |||||||||||| ||||||||||||||||| ||||||| Sbjct: 29511717 ggatgggtacaacgatttcaacacattctacatgcagg 29511680 Score = 48.1 bits (24), Expect = 0.017 Identities = 42/48 (87%) Strand = Plus / Minus Query: 273 gttgttagggcactgaatttgatacgtgattgttgggatgcatttggt 320 |||||||||||||| ||| |||||||||| ||||||| || |||||| Sbjct: 29510006 gttgttagggcacttaatctgatacgtgacagttgggaagcttttggt 29509959
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 186 bits (94), Expect = 3e-44 Identities = 121/130 (93%) Strand = Plus / Minus Query: 145 aggctgcatctggaactaaaggtggctctagtggttccccagttgttgattgccaaggaa 204 ||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 106007 aggctgcatctggtaccaaaggtggctctagtggttcccctgttgttgattgtcaaggaa 105948 Query: 205 gagctgttgccctgaatgccggaagcaaatcttccagtgcttctgccttcttccttccat 264 ||||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||| Sbjct: 105947 gagctgtcgccctgaatgctggaagtaaatcttccagtgcttctgcgtttttccttccat 105888 Query: 265 tagaacgtgt 274 |||||||||| Sbjct: 105887 tagaacgtgt 105878 Score = 99.6 bits (50), Expect = 5e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 49 aggtttcaattttggcgggaacacttgctcgacttgatagagaagcgcctcactacaaga 108 |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 107282 aggtgtcaattttggcgggaacacttgctcgacttgatagagaagcaccttactacaaga 107223 Query: 109 ag 110 || Sbjct: 107222 ag 107221 Score = 81.8 bits (41), Expect = 1e-12 Identities = 50/53 (94%) Strand = Plus / Minus Query: 1 catctgttgggctagaaatccgagttgtcggcaatgacagcggcgaaaaggtt 53 |||||||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 108373 catctgttggtctggaaatccgggttgtcggcaatgacagcggcgaaaaggtt 108321 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 110 ggatgggtacaatgatttcaacacattctatatgcagg 147 |||||||||||| ||||||||||||||||| ||||||| Sbjct: 106747 ggatgggtacaacgatttcaacacattctacatgcagg 106710 Score = 48.1 bits (24), Expect = 0.017 Identities = 42/48 (87%) Strand = Plus / Minus Query: 273 gttgttagggcactgaatttgatacgtgattgttgggatgcatttggt 320 |||||||||||||| ||| |||||||||| ||||||| || |||||| Sbjct: 105036 gttgttagggcacttaatctgatacgtgacagttgggaagcttttggt 104989
>ref|NM_111209.2| Arabidopsis thaliana protein binding / serine-type endopeptidase/ serine-type peptidase/ trypsin AT3G03380 mRNA, complete cds Length = 3602 Score = 67.9 bits (34), Expect = 2e-08 Identities = 145/182 (79%) Strand = Plus / Plus Query: 102 tacaagaaggatgggtacaatgatttcaacacattctatatgcaggctgcatctggaact 161 ||||| |||||||| || || || ||||| || || |||||||| || ||||| || ||| Sbjct: 649 tacaaaaaggatggttataacgacttcaatacgttttatatgcaagcagcatcaggtact 708 Query: 162 aaaggtggctctagtggttccccagttgttgattgccaaggaagagctgttgccctgaat 221 |||||||| || |||||||| || || ||||||| ||||| || || || || ||||| Sbjct: 709 aaaggtggttcaagtggttctcccgtcattgattggcaaggcagggcagtagctttgaat 768 Query: 222 gccggaagcaaatcttccagtgcttctgccttcttccttccattagaacgtgttgttagg 281 || || ||||| || || ||||| || ||||||||||| ||| | |||| ||||||||| Sbjct: 769 gctggcagcaagtcgtcaagtgcatcagccttcttcctaccacttcaacgagttgttagg 828 Query: 282 gc 283 || Sbjct: 829 gc 830
>gb|AY078951.1| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, complete cds Length = 3604 Score = 67.9 bits (34), Expect = 2e-08 Identities = 145/182 (79%) Strand = Plus / Plus Query: 102 tacaagaaggatgggtacaatgatttcaacacattctatatgcaggctgcatctggaact 161 ||||| |||||||| || || || ||||| || || |||||||| || ||||| || ||| Sbjct: 649 tacaaaaaggatggttataacgacttcaatacgttttatatgcaagcagcatcaggtact 708 Query: 162 aaaggtggctctagtggttccccagttgttgattgccaaggaagagctgttgccctgaat 221 |||||||| || |||||||| || || ||||||| ||||| || || || || ||||| Sbjct: 709 aaaggtggttcaagtggttctcccgtcattgattggcaaggcagggcagtagctttgaat 768 Query: 222 gccggaagcaaatcttccagtgcttctgccttcttccttccattagaacgtgttgttagg 281 || || ||||| || || ||||| || ||||||||||| ||| | |||| ||||||||| Sbjct: 769 gctggcagcaagtcgtcaagtgcatcagccttcttcctaccacttcaacgagttgttagg 828 Query: 282 gc 283 || Sbjct: 829 gc 830
>gb|BT002727.1| Arabidopsis thaliana At3g03380/T21P5_20 gene, complete cds Length = 3294 Score = 67.9 bits (34), Expect = 2e-08 Identities = 145/182 (79%) Strand = Plus / Plus Query: 102 tacaagaaggatgggtacaatgatttcaacacattctatatgcaggctgcatctggaact 161 ||||| |||||||| || || || ||||| || || |||||||| || ||||| || ||| Sbjct: 544 tacaaaaaggatggttataacgacttcaatacgttttatatgcaagcagcatcaggtact 603 Query: 162 aaaggtggctctagtggttccccagttgttgattgccaaggaagagctgttgccctgaat 221 |||||||| || |||||||| || || ||||||| ||||| || || || || ||||| Sbjct: 604 aaaggtggttcaagtggttctcccgtcattgattggcaaggcagggcagtagctttgaat 663 Query: 222 gccggaagcaaatcttccagtgcttctgccttcttccttccattagaacgtgttgttagg 281 || || ||||| || || ||||| || ||||||||||| ||| | |||| ||||||||| Sbjct: 664 gctggcagcaagtcgtcaagtgcatcagccttcttcctaccacttcaacgagttgttagg 723 Query: 282 gc 283 || Sbjct: 724 gc 725
>emb|BX842421.1|CNS0A7UF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZA10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2544 Score = 52.0 bits (26), Expect = 0.001 Identities = 116/146 (79%) Strand = Plus / Plus Query: 138 tatatgcaggctgcatctggaactaaaggtggctctagtggttccccagttgttgattgc 197 |||||||| || ||||| || |||||| |||| || |||||||| || || ||||||| Sbjct: 696 tatatgcaagcagcatcaggtactaaaagtggttcaagtggttctcccgtcattgattgg 755 Query: 198 caaggaagagctgttgccctgaatgccggaagcaaatcttccagtgcttctgccttcttc 257 ||||| || || || || ||||||| || ||||| || || ||||| || ||||||||| Sbjct: 756 caaggcagggcagtagctttgaatgctggcagcaagtcgtcaagtgcatcagccttcttc 815 Query: 258 cttccattagaacgtgttgttagggc 283 || ||| | |||| ||||||||||| Sbjct: 816 ctaccacttcaacgagttgttagggc 841
>gb|AC009895.4|ATAC009895 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence Length = 82289 Score = 46.1 bits (23), Expect = 0.068 Identities = 92/115 (80%) Strand = Plus / Minus Query: 145 aggctgcatctggaactaaaggtggctctagtggttccccagttgttgattgccaaggaa 204 |||| ||||| || ||||||||||| || |||||||| || || ||||||| ||||| | Sbjct: 58594 aggcagcatcaggtactaaaggtggttcaagtggttctcccgtcattgattggcaaggca 58535 Query: 205 gagctgttgccctgaatgccggaagcaaatcttccagtgcttctgccttcttcct 259 | || || || ||||||| || ||||| || || ||||| || ||||||||||| Sbjct: 58534 gggcagtagctttgaatgctggcagcaagtcgtcaagtgcatcagccttcttcct 58480
>gb|AC154362.1| Mus musculus BAC clone RP23-154E1 from 14, complete sequence Length = 205650 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 gtgcttctgccttcttccttcc 262 |||||||||||||||||||||| Sbjct: 101639 gtgcttctgccttcttccttcc 101660
>gb|AC099484.4| Homo sapiens chromosome 5 clone CTD-2004P1, complete sequence Length = 134760 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 caagaaggatgggtacaatga 124 ||||||||||||||||||||| Sbjct: 91909 caagaaggatgggtacaatga 91889
>emb|Z74472.1|CEF23H12 Caenorhabditis elegans Cosmid F23H12, complete sequence Length = 35564 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 atttgatacgtgattgttgggatg 312 ||||||| |||||||||||||||| Sbjct: 25841 atttgattcgtgattgttgggatg 25818
>gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G10, complete sequence Length = 228160 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggctctagtggttccccagt 187 |||||||||||||||||||| Sbjct: 200849 ggctctagtggttccccagt 200830
>emb|AL592293.7| Human DNA sequence from clone RP11-54D18 on chromosome 9 Contains a lactate dehdrogenase A (LDHA) (LOC158222) pseudogene, a novel pseudogene (FLJ20543), a pseudogene similar to part of chloride channel 3 (CLCN3) (CLC3), a pseudogene similar to part of PC4 and SFRS1 interacting protein 2 (PSIP2) and a CpG island, complete sequence Length = 157574 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ttctgccttcttccttccat 264 |||||||||||||||||||| Sbjct: 151670 ttctgccttcttccttccat 151651
>emb|AL360297.12| Human DNA sequence from clone RP11-386O9 on chromosome 1 Contains two novel genes, complete sequence Length = 169881 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tacaagaaggatgggtacaa 121 |||||||||||||||||||| Sbjct: 45090 tacaagaaggatgggtacaa 45071
>emb|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719 Length = 202089 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 attgccaaggaagagctgtt 212 |||||||||||||||||||| Sbjct: 195926 attgccaaggaagagctgtt 195945
>ref|NM_073696.1| Caenorhabditis elegans Guanylyl CYclase family member (gcy-13) (gcy-13) mRNA, complete cds Length = 3078 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 atttgatacgtgattgttgggatg 312 ||||||| |||||||||||||||| Sbjct: 2252 atttgattcgtgattgttgggatg 2275
>gb|AC154829.2| Mus musculus BAC clone RP24-550F10 from 14, complete sequence Length = 136754 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggctctagtggttccccagt 187 |||||||||||||||||||| Sbjct: 119946 ggctctagtggttccccagt 119927
>gb|M22526.1|MUSSPCTLS Mouse cytotoxic T lymphocyte-specific serine protease CCPI gene, complete cds Length = 4348 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggctctagtggttccccagt 187 |||||||||||||||||||| Sbjct: 1488 ggctctagtggttccccagt 1507
>dbj|D86418.1| Bacillus subtilis genomic DNA 69-70 degree region, partial sequence Length = 20341 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 attgccaaggaagagctgtt 212 |||||||||||||||||||| Sbjct: 6164 attgccaaggaagagctgtt 6145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,632,806 Number of Sequences: 3902068 Number of extensions: 2632806 Number of successful extensions: 53430 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53377 Number of HSP's gapped (non-prelim): 53 length of query: 320 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 298 effective length of database: 17,147,199,772 effective search space: 5109865532056 effective search space used: 5109865532056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
