Clone Information

BLAST Search Result

Clone Name	bastl41a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AMID_PSEPU (O69768) Amidase (EC 3.5.1.4)	33	0.16
2	FBX11_RAT (Q7TSL3) F-box only protein 11	33	0.21
3	FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated ...	33	0.21
4	FBX15_MOUSE (Q9QZN0) F-box only protein 15	33	0.21
5	LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC...	31	0.62
6	FBX15_HUMAN (Q8NCQ5) F-box only protein 15	30	1.1
7	FBX8_HUMAN (Q9NRD0) F-box only protein 8 (F-box/SEC7 protein FBS)	30	1.1
8	PTN5_HUMAN (P54829) Tyrosine-protein phosphatase non-receptor ty...	30	1.1
9	FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 ...	30	1.1
10	IAAD_HORVU (P11643) Alpha-amylase/trypsin inhibitor CMd precurso...	30	1.4
11	IAAC3_WHEAT (P17314) Alpha-amylase/trypsin inhibitor CM3 precurs...	30	1.4
12	ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kel...	30	1.4
13	ZN549_PONPY (Q5RBQ3) Zinc finger protein 549	30	1.8
14	ZN549_HUMAN (Q6P9A3) Zinc finger protein 549	30	1.8
15	FBX15_MACFA (Q9GKV7) F-box only protein 15	30	1.8
16	HFI1_YEAST (Q12060) Transcriptional coactivator HFI1/ADA1	30	1.8
17	STON2_MOUSE (Q8BZ60) Stonin-2 (Stoned B)	30	1.8
18	TLE4_MOUSE (Q62441) Transducin-like enhancer protein 4 (Groucho-...	29	3.1
19	TLE4_HUMAN (Q04727) Transducin-like enhancer protein 4	29	3.1
20	GPR88_MOUSE (Q9EPB7) Probable G-protein coupled receptor 88 (Str...	29	3.1
21	FBX36_HUMAN (Q8NEA4) F-box only protein 36	28	4.0
22	RFBG_SALTY (P26397) CDP-glucose 4,6-dehydratase (EC 4.2.1.45)	28	4.0
23	FBXW8_HUMAN (Q8N3Y1) F-box/WD-repeat protein 8 (F-box and WD-40 ...	28	4.0
24	IF2_PROAC (Q6A7M5) Translation initiation factor IF-2	28	5.2
25	FBXW5_MOUSE (Q9QXW2) F-box/WD-repeat protein 5 (F-box and WD-40 ...	28	5.2
26	FBX8_MOUSE (Q9QZN3) F-box only protein 8	28	5.2
27	AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding f...	28	5.2
28	CBIO1_STRCO (Q9KXJ6) Putative cobalt import ATP-binding protein ...	28	5.2
29	FBX7_HUMAN (Q9Y3I1) F-box only protein 7	28	5.2
30	NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)	28	5.2
31	ASSY_ZYMMO (Q5NNQ0) Argininosuccinate synthase (EC 6.3.4.5) (Cit...	28	5.2
32	RRP3_CRYNE (Q5KBE2) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)	28	5.2
33	FBX36_PONPY (Q5R796) F-box only protein 36	28	6.8
34	SKP2_MOUSE (Q9Z0Z3) S-phase kinase-associated protein 2 (F-box p...	28	6.8
35	S4A7_MOUSE (Q8BTY2) Sodium bicarbonate cotransporter 3 (Solute c...	28	6.8
36	RL332_MYCPN (P56850) 50S ribosomal protein L33 2	28	6.8
37	FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 ...	28	6.8
38	IF2_BRAJA (Q89WA9) Translation initiation factor IF-2	28	6.8
39	FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 ...	28	6.8
40	S4A7_RAT (Q9R1N3) Sodium bicarbonate cotransporter 3 (Electroneu...	28	6.8
41	SKP2_HUMAN (Q13309) S-phase kinase-associated protein 2 (F-box p...	27	8.9
42	MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1	27	8.9
43	FBX15_BOVIN (Q3SYW0) F-box only protein 15	27	8.9
44	DOC2B_MOUSE (P70169) Double C2-like domain-containing protein be...	27	8.9

>AMID_PSEPU (O69768) Amidase (EC 3.5.1.4)|
          Length = 466

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
 Frame = +3

Query: 30  PKPSKPTDPARSPAMESAGNDRRDAA----------LGGLAVLPDELLCAIVDLLQPTDI 179
           PK   P DP R+P   S G+    AA           GG   +P   +C  V L QPT +
Sbjct: 133 PKSRNPRDPGRTPGGSSGGSAATVAACCVYLATGTDTGGSVRIPSS-MCNTVGLKQPT-V 190

Query: 180 GRL--ACVSSVMYILCNEEPL 236
           GR+  A VSS+ + L +  P+
Sbjct: 191 GRVHGAGVSSLSWSLDHPGPI 211

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>FBX11_RAT (Q7TSL3) F-box only protein 11|
          Length = 843

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSV 260
           LPDE++  I   L   D+ R ACV      L N+  LW   Y+ V
Sbjct: 75  LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEV 119

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>FBX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated protein VIT-1)|
          Length = 843

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSV 260
           LPDE++  I   L   D+ R ACV      L N+  LW   Y+ V
Sbjct: 75  LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEV 119

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>FBX15_MOUSE (Q9QZN0) F-box only protein 15|
          Length = 433

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGHLEYKGSWKKTTL 305
           +P E+L  I+  L    +  + CVS   Y L ++  +W+ KY         +  WK T++
Sbjct: 1   MPSEILVKILSYLDAVTLVCIGCVSRRFYHLADDNLIWVRKY--AAAFRSKRSRWKATSV 58

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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
 Frame = +3

Query: 36   PSKPTDPARSPAMESAGNDRRDAALGGLAVLPD--------ELLCAIVDLLQPTDIGRLA 191
            P++PT   R+   E  G+D RD       VL D         ++ AI+DLL         
Sbjct: 792  PNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHS----- 846

Query: 192  CVSSVMYILCNEEPLWMSKYLSVGGHLEYKGSWKKTTLSRLSLCFENSELEQKTRHFDGF 371
              S   Y+  +EEP W    +      E+K S +K       +   N++ ++K RH  G 
Sbjct: 847  --SDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIV---EQVDEWNNDPDRKNRHGAGM 901

Query: 372  NSMYLYR 392
                L R
Sbjct: 902  VPYVLLR 908

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>FBX15_HUMAN (Q8NCQ5) F-box only protein 15|
          Length = 434

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGHLEYKGSWKKTTL 305
           +P E+L  I   L    +    CVS   Y L N+  +W+  Y +       + +WK  ++
Sbjct: 1   MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYST--AFSPARSNWKFNSV 58

Query: 306 SRLSLCFENSELEQK 350
            ++++      ++ K
Sbjct: 59  EKIAMSMSFLSVQDK 73

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>FBX8_HUMAN (Q9NRD0) F-box only protein 8 (F-box/SEC7 protein FBS)|
          Length = 319

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = +3

Query: 117 LAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGH 269
           L +LP EL   I+  L  TD   L   S V   L N+E LW     S  GH
Sbjct: 71  LEMLPPELSFTILSYLNATD---LCLASCVWQDLANDELLWQGLCKSTWGH 118

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>PTN5_HUMAN (P54829) Tyrosine-protein phosphatase non-receptor type 5 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase
           striatum-enriched) (STEP) (Neural-specific
           protein-tyrosine phosphatase)
          Length = 541

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 3   QRAIPSPHAPKPSKPTDPARSPAMESAGN 89
           QR +P P  P PS P+DPA+ P    AG+
Sbjct: 29  QREMPPP--PPPSPPSDPAQKPPPRGAGS 55

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>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein 7)|
            (Protein archipelago)
          Length = 1326

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 117  LAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSK 248
            +++LP EL   ++  L+P D+ R A        LC++  LW  K
Sbjct: 892  ISLLPRELALFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEK 935

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>IAAD_HORVU (P11643) Alpha-amylase/trypsin inhibitor CMd precursor|
           (Chloroform/methanol-soluble protein CMd)
          Length = 171

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +3

Query: 30  PKPSKPTDPARSPAMESAGNDRRDAALGGLAVLPDELLCAIVDLLQPTDIGRLACVSSVM 209
           P PS+P DP       S GN  + + L  L   P E+    V LL       LA + +V 
Sbjct: 109 PVPSQPVDP-------STGNVGQ-SGLMDLPGCPREMQRDFVRLLVAPGQCNLATIHNVR 160

Query: 210 YILCNEEPLWM 242
           Y    E+PLW+
Sbjct: 161 YCPAVEQPLWI 171

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>IAAC3_WHEAT (P17314) Alpha-amylase/trypsin inhibitor CM3 precursor|
           (Chloroform/methanol-soluble protein CM3)
          Length = 168

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +3

Query: 30  PKPSKPTDPARSPAMESAGNDRRDAALGGLAVLPDELLCAIVDLLQPTDIGRLACVSSVM 209
           P PS+P DP      ES   D        L   P E+    V LL       LA + +V 
Sbjct: 106 PVPSQPVDPRSGNVGESGLID--------LPGCPREMQWDFVRLLVAPGQCNLATIHNVR 157

Query: 210 YILCNEEPLWM 242
           Y    E+PLW+
Sbjct: 158 YCPAVEQPLWI 168

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>ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1)|
           (Flavin-binding kelch repeat F-box protein 1-like
           protein 2) (FKF1-like protein 2) (F-box only protein 2b)
           (FBX2b) (Clock-associated PAS protein ZTL)
          Length = 609

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 78  SAGNDRRDAALGGLAVLPDELLCA-IVDLLQPTDIGRLACVSSVMYILCNEEPLW 239
           +AG       + GL  L DE++   I+  L P D+  ++ V   +Y+L   E LW
Sbjct: 184 AAGERNVSRGMCGLFQLSDEVVSMKILSRLTPRDVASVSSVCRRLYVLTKNEDLW 238

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>ZN549_PONPY (Q5RBQ3) Zinc finger protein 549|
          Length = 640

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 257 GKVFTHPERFLVAKYVHDTADACEASDVG 171
           GKVF+H +R L  + VH     CE S+ G
Sbjct: 535 GKVFSHQKRLLEHQKVHTGEKPCECSECG 563

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>ZN549_HUMAN (Q6P9A3) Zinc finger protein 549|
          Length = 640

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 257 GKVFTHPERFLVAKYVHDTADACEASDVG 171
           GKVF+H +R L  + VH     CE S+ G
Sbjct: 535 GKVFSHQKRLLEHQKVHTGEKPCECSECG 563

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>FBX15_MACFA (Q9GKV7) F-box only protein 15|
          Length = 434

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGHLEYKGSWKKTTL 305
           +P E+L  I   L    +    CVS   Y L N+  +W+  Y +       + +WK  ++
Sbjct: 1   MPSEILLKIFSYLDAVSLLCAGCVSRRFYHLANDNFIWIRIYST--AFSPTRSNWKVNSV 58

Query: 306 SRLSLCFENSELEQK 350
            ++++      ++ K
Sbjct: 59  EKIAVSVSFLSVQDK 73

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>HFI1_YEAST (Q12060) Transcriptional coactivator HFI1/ADA1|
          Length = 488

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +3

Query: 9  AIPSPHAPKPSKPTDPARSPAMESA 83
          AI SP APKP +PT PA SPA  +A
Sbjct: 3  AIQSP-APKPLQPTYPAASPASTNA 26

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>STON2_MOUSE (Q8BZ60) Stonin-2 (Stoned B)|
          Length = 895

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +3

Query: 15  PSPHAPKPSKPTDPARSPA-----MESAGNDRRDAALGGLAVLPDELLCAIVDLLQPTDI 179
           PSP  P P KP  P+ + A       S G+ +RD     L  LP      I  L +P  +
Sbjct: 241 PSPPVPSPKKPNTPSAATAAPDVPFNSTGSFKRDRPKSTLMNLPKVQKLDISSLNRPPSV 300

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>TLE4_MOUSE (Q62441) Transducin-like enhancer protein 4 (Groucho-related|
           protein 4) (Grg-4)
          Length = 766

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 12  IPSPHAPKPSKPTDPARSPAMESAGNDRRDAALGGLAVLP 131
           +P P  P PS    PA  P   SAG     +ALGG + LP
Sbjct: 137 LPVPLTPHPSGLQPPAIPPIGSSAGLLALSSALGGQSHLP 176

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>TLE4_HUMAN (Q04727) Transducin-like enhancer protein 4|
          Length = 766

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 12  IPSPHAPKPSKPTDPARSPAMESAGNDRRDAALGGLAVLP 131
           +P P  P PS    PA  P   SAG     +ALGG + LP
Sbjct: 137 LPVPLTPHPSGLQPPAIPPIGSSAGLLALSSALGGQSHLP 176

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>GPR88_MOUSE (Q9EPB7) Probable G-protein coupled receptor 88 (Striatum-specific|
           G-protein coupled receptor)
          Length = 384

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  SPHAPKPSKPTDPARSPAMESAGNDRR-DAALGGLAVLPDELLCAI 152
           +PHAP P     PA+   + +A   RR    L GL+VL   LLC +
Sbjct: 250 APHAPGPGGAAHPAQPQPLPAALQPRRAQRRLSGLSVL---LLCCV 292

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>FBX36_HUMAN (Q8NEA4) F-box only protein 36|
          Length = 188

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLW 239
           L D+LL  I+  L   DI RL   S     LC  + LW
Sbjct: 97  LSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLW 134

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>RFBG_SALTY (P26397) CDP-glucose 4,6-dehydratase (EC 4.2.1.45)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 225 EEPLWMSKYLSVGGHLEYKGSWKKTTLSRLSLCFENSELEQKT 353
           ++  W  K + V GH  +KGSW    L+ +    +   L+  T
Sbjct: 3   DKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPT 45

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>FBXW8_HUMAN (Q8N3Y1) F-box/WD-repeat protein 8 (F-box and WD-40 domain protein|
           8) (F-box only protein 29)
          Length = 598

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGHL 272
           LP EL   I   L   ++GR A VS    ++  +E LW  +     GHL
Sbjct: 119 LPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWY-RLCQQEGHL 166

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>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 12  IPSPHAPKPS-KPTDPARSPAMESAGNDRRDAALGGLAVLP 131
           +P PHAP P  KP  P++SP   +    R     GG A LP
Sbjct: 156 VPKPHAPAPKPKPGAPSKSPKPGARPGPRP----GGSAGLP 192

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>FBXW5_MOUSE (Q9QXW2) F-box/WD-repeat protein 5 (F-box and WD-40 domain protein|
           5)
          Length = 573

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 111 GGLAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKY 251
           GGL +LPD L+  I   L P D+     V      +  +E LW  ++
Sbjct: 4   GGLPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEFLWKEQF 50

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>FBX8_MOUSE (Q9QZN3) F-box only protein 8|
          Length = 319

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 117 LAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYLSVGGH 269
           L +LP EL   I+  L   D+   +CV      L N+E LW     S  GH
Sbjct: 71  LEMLPPELSFTILSYLNAIDLCLASCV---WQDLANDELLWQGLCKSTWGH 118

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>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
           (Rap1-GTP-interacting adapter molecule) (RIAM)
           (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich
           protein 73) (Retinoic ac
          Length = 666

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 9   AIP-SPHAPKPSKPTDPARSPAMESAGN-----DRRDAALGGLAVLPDELL 143
           A+P +PHAPK S P  P    + +++G+       +    GGL   PD+ L
Sbjct: 504 AVPRAPHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFL 554

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>CBIO1_STRCO (Q9KXJ6) Putative cobalt import ATP-binding protein cbiO 1|
          Length = 563

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
 Frame = +3

Query: 9   AIPSPHAPK---------PSKPTDP--ARSPAMESAGNDR-RDAALGGLAVLPDELLCAI 152
           A+P   AP+         P +P D   A + A E A  DR  DAA G    L  ELL  I
Sbjct: 378 AVPHRTAPRDLVRRVGLVPQEPRDLLYADTVAAECAAADRDADAAPGTCRALLSELLPGI 437

Query: 153 VDLLQPTDIG---RLACVSSVM 209
            D + P D+    RL    SV+
Sbjct: 438 TDDIHPRDLSEGQRLTLALSVV 459

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>FBX7_HUMAN (Q9Y3I1) F-box only protein 7|
          Length = 522

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 114 GLAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSKYL 254
           GL VLP EL   I  LL    +  L+ V   ++   N+  LW   YL
Sbjct: 331 GLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPLLWRFLYL 377

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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 3   QRAIPSPHAPKPSKPTDPARSPAMES 80
           +R++PSP +P PS    P+ SP+  S
Sbjct: 156 RRSLPSPPSPSPSPSPSPSPSPSPRS 181

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>ASSY_ZYMMO (Q5NNQ0) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 408

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 45  PTDPARSPAMESAGNDRRDA-ALGGLAVLPDELLCAIVDLLQPTDIGRLACVSS 203
           P D   +P + +   +R DA A+ G A+ P ELL  + +L +   IGRL  V +
Sbjct: 215 PEDAPNTPEIITIDFERGDAIAINGEALSPAELLTKLNELGRKHGIGRLDLVEN 268

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>RRP3_CRYNE (Q5KBE2) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 484

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +3

Query: 15  PSPHAPKP-SKPTDPARSPAMESAGNDRRDAA----LGGLAVLPDEL-LCAIVDLLQPTD 176
           PSP A    S+P  P+RSP+  S+  D  +A+       L + P+    CA +   +P+D
Sbjct: 4   PSPEASSSMSQPGPPSRSPSPASSNPDAPEASHNKTFADLGISPELCRACASMGFKKPSD 63

Query: 177 I 179
           I
Sbjct: 64  I 64

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>FBX36_PONPY (Q5R796) F-box only protein 36|
          Length = 188

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLW 239
           L D+LL  I+  L   DI RL   S     LC  + LW
Sbjct: 97  LSDDLLLNIISYLDLEDIARLCQTSHRFAKLCMSDKLW 134

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>SKP2_MOUSE (Q9Z0Z3) S-phase kinase-associated protein 2 (F-box protein Skp2)|
           (Cyclin A/CDK2-associated protein p45) (F-box/WD-40
           protein 1) (FWD1)
          Length = 424

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMS 245
           LPDELL  I   L   ++ R++ V    Y L  +E LW S
Sbjct: 100 LPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQS 139

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>S4A7_MOUSE (Q8BTY2) Sodium bicarbonate cotransporter 3 (Solute carrier family|
           4 member 7)
          Length = 1034

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12  IPSP--HAPKPSKPTDPARSPAMESAGNDRRDAALGGLAVLPDELLCAIV 155
           IPSP  H P+  +PTDP+R   +   G++     L  +A +P  LLC I+
Sbjct: 748 IPSPKLHVPEKFEPTDPSRGWIISPLGDNPWWTLL--IAAVP-ALLCTIL 794

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>RL332_MYCPN (P56850) 50S ribosomal protein L33 2|
          Length = 48

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 276 YKGSWKKTTLSRLSLCFENSELEQKTRHFDGF 371
           Y  SW K  L+RL +        QKT+H D F
Sbjct: 17  YVMSWSKQVLNRLIINKYCKHCNQKTKHLDSF 48

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>FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (F-box protein FBW7) (F-box protein Fbxw6)
           (F-box-WD40 repeat protein 6) (SEL-10)
          Length = 629

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 117 LAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSK 248
           +++LP EL   ++  L+P D+ + A       IL  +  LW  K
Sbjct: 203 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 246

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>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
 Frame = +3

Query: 9   AIPSPHAPKPSKPTDPARSPAMESAG-------NDRRDAALGGLA 122
           A P+P AP PS+P  P   P    +G        D R A    LA
Sbjct: 65  AKPAPAAPAPSRPAPPPAPPRNAGSGVVLRTLTEDERSARASALA 109

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>FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (F-box protein FBX30) (hCdc4) (Archipelago homolog)
           (hAgo) (SEL-10)
          Length = 707

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 117 LAVLPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMSK 248
           +++LP EL   ++  L+P D+ + A       IL  +  LW  K
Sbjct: 281 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 324

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>S4A7_RAT (Q9R1N3) Sodium bicarbonate cotransporter 3 (Electroneutral sodium|
            bicarbonate cotransporter 1) (NBC-like protein) (Solute
            carrier family 4 member 7)
          Length = 1218

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12   IPSP--HAPKPSKPTDPARSPAMESAGNDRRDAALGGLAVLPDELLCAIV 155
            IPSP  H P+  +PTDP+R   +   G++     L  +A +P  LLC I+
Sbjct: 884  IPSPKLHVPEKFEPTDPSRGWIISPLGDNPWWTLL--IAAVP-ALLCTIL 930

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>SKP2_HUMAN (Q13309) S-phase kinase-associated protein 2 (F-box protein Skp2)|
           (Cyclin A/CDK2-associated protein p45) (p45skp2)
           (F-box/LRR-repeat protein 1)
          Length = 424

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 126 LPDELLCAIVDLLQPTDIGRLACVSSVMYILCNEEPLWMS 245
           LPDELL  I   L   ++ +++ V    Y L ++E LW +
Sbjct: 100 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 139

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>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 12   IPSPHAPKPSKPTDPARSPAMESA---GNDRRDAALGGLAVLPDE 137
            +P+   P+PS PTD   +P + SA   G  RR +      V+P +
Sbjct: 1423 VPTDPEPQPSTPTDQPITPELTSAATRGRTRRSSVKTPEPVVPTD 1467

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>FBX15_BOVIN (Q3SYW0) F-box only protein 15|
          Length = 466

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/72 (23%), Positives = 27/72 (37%)
 Frame = +3

Query: 36  PSKPTDPARSPAMESAGNDRRDAALGGLAVLPDELLCAIVDLLQPTDIGRLACVSSVMYI 215
           P+ P   +R    +             L  LP E+L  I+  L    +    CV+   Y 
Sbjct: 3   PAGPAALSRRARQDKVCRRPSTGCSASLDSLPSEVLLKILSYLDAAALLCAGCVNRRFYH 62

Query: 216 LCNEEPLWMSKY 251
           L N+  +W+  Y
Sbjct: 63  LANDNFIWIRIY 74

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>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)|
          Length = 412

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 6   RAIPSPHAPK-PSKPTDPARSPAMESAGNDRRDAA 107
           R +P   AP+ P+ P  PARSPA  ++     D A
Sbjct: 42  RGLPPTAAPRAPAPPDAPARSPAASASPRSPSDGA 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,300,396
Number of Sequences: 219361
Number of extensions: 885946
Number of successful extensions: 3820
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3797
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result