>LACI_KLEPN (P06220) Lactose operon repressor (Fragment)|
          Length = 354

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 235 AARVSIPAAVRRTIQNIKEIAGNHTDEEVYAALRECDMDPNETAQKL 375
           A R  +PA   R + N  E+    T E+V  A++     PN +AQ L
Sbjct: 12  ARRGRVPADGLRRVLNRPEVVSARTREQVIRAMQALHYVPNRSAQLL 58

>YP79_CAEEL (Q09439) Hypothetical protein B0228.9|
          Length = 338

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 250 IPAAVRRTIQNIKEIAGNHTDEEVYAALRECDMDPNE 360
           +P  V +T+QN +E     TD+ +     E  MD NE
Sbjct: 153 LPDGVDQTLQNFEEFGDWITDDAIIVVCDEQKMDKNE 189

>SGTB_MOUSE (Q8VD33) Small glutamine-rich tetratricopeptide repeat-containing|
           protein B
          Length = 304

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 247 SIPAAVRRTIQNIKEIAGNHTDEEVYAALREC-----DMDPN 357
           S+P  V +  Q +K+   NH  EE YAA  +C     ++DPN
Sbjct: 77  SVPEDVGKADQ-LKDEGNNHMKEENYAAAVDCYTQAIELDPN 117

>SGTB_HUMAN (Q96EQ0) Small glutamine-rich tetratricopeptide repeat-containing|
           protein B (Small glutamine-rich protein with
           tetratricopeptide repeats 2)
          Length = 304

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 247 SIPAAVRRTIQNIKEIAGNHTDEEVYAALREC-----DMDPN 357
           S+P  V +  Q +K+   NH  EE YAA  +C     ++DPN
Sbjct: 77  SVPEDVGKADQ-LKDEGNNHMKEENYAAAVDCYTQAIELDPN 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,637,452
Number of Sequences: 219361
Number of extensions: 112703
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)