ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
2dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
3dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
4dbj|AK105353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
6dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
7dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
8dbj|AK121282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
9dbj|AK099498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
10gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)... 56 8e-05
11gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
12gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
14gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,... 48 0.021
15ref|XM_468448.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.081
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
17dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
18dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
19dbj|AK103477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
20dbj|AK071291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
21gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome ... 44 0.32
22gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.32
23gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.3
24emb|Y09430.1|DMGROOVIN Drosophila melanogaster mRNA for Kakapo (... 42 1.3
25gb|AY122181.1| Drosophila melanogaster LD39385 full insert cDNA 42 1.3
26gb|AC109641.4| Homo sapiens BAC clone RP11-763N18 from 4, comple... 42 1.3
27ref|NM_166019.1| Drosophila melanogaster short stop CG18076-RH, ... 42 1.3
28ref|NM_166018.1| Drosophila melanogaster short stop CG18076-RC, ... 42 1.3
29ref|NM_166017.1| Drosophila melanogaster short stop CG18076-RE, ... 42 1.3
30ref|NM_166016.1| Drosophila melanogaster short stop CG18076-RB, ... 42 1.3
31ref|NM_166015.1| Drosophila melanogaster short stop CG18076-RG, ... 42 1.3
32ref|NM_079009.2| Drosophila melanogaster short stop CG18076-RA, ... 42 1.3
33gb|AC099008.1| Drosophila melanogaster, chromosome 2R, region 50... 42 1.3
34gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, r... 42 1.3
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
36gb|AF200425.1|AF200425 Drosophila melanogaster Short stop/Kakapo... 42 1.3
37dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
38dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
39gb|AC005977.3|AC005977 Drosophila melanogaster, chromosome 2R, r... 42 1.3
40gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34... 42 1.3
41ref|XM_476782.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
42ref|XM_507353.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
43ref|XM_506190.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
44gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.0
45gb|AY233333.1| Escherichia coli strain ECOR31 high pathogenicity... 40 5.0
46gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide comple... 40 5.0
47ref|XM_846360.1| PREDICTED: Canis familiaris similar to PHD fing... 40 5.0
48emb|AL445307.8| Human DNA sequence from clone RP5-826L7 on chrom... 40 5.0
49emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 40 5.0
50gb|BC076508.1| Danio rerio procollagen-proline, 2-oxoglutarate 4... 40 5.0
51dbj|AK080724.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 5.0
52dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
54ref|NM_001007285.1| Danio rerio procollagen-proline, 2-oxoglutar... 40 5.0
55dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
56dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
57dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
58dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
59dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
60dbj|AK098899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
61dbj|AK098856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
62dbj|AK065275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
63emb|AL596384.17| Mouse DNA sequence from clone RP23-353J21 on ch... 40 5.0
64gb|U14555.1|GGU14555 Gallus gallus zinc-finger protein mRNA, par... 40 5.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  228 bits (115), Expect = 1e-56
 Identities = 130/135 (96%)
 Strand = Plus / Plus

                                                                           
Query: 229     atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 288
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4500742 atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 4500801

                                                                           
Query: 289     gagatcgcggggaaccacaccgacgaggaggtctacgccgcgctccgcgaatgcgacatg 348
               |||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 4500802 gagatcgcgggcggccacaccgacgaggaggtctacgccgtgctccgcgaatgcaacatg 4500861

                              
Query: 349     gatcccaacgagacc 363
               |||||||||||||||
Sbjct: 4500862 gatcccaacgagacc 4500876



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 306      caccgacgaggaggtctacgccgcg 330
                ||||||||||||| |||||||||||
Sbjct: 21463191 caccgacgaggagatctacgccgcg 21463167
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score =  228 bits (115), Expect = 1e-56
 Identities = 130/135 (96%)
 Strand = Plus / Plus

                                                                         
Query: 229   atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44116 atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 44175

                                                                         
Query: 289   gagatcgcggggaaccacaccgacgaggaggtctacgccgcgctccgcgaatgcgacatg 348
             |||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 44176 gagatcgcgggcggccacaccgacgaggaggtctacgccgtgctccgcgaatgcaacatg 44235

                            
Query: 349   gatcccaacgagacc 363
             |||||||||||||||
Sbjct: 44236 gatcccaacgagacc 44250
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>dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1077E10
          Length = 100821

 Score =  228 bits (115), Expect = 1e-56
 Identities = 130/135 (96%)
 Strand = Plus / Plus

                                                                         
Query: 229   atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73230 atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 73289

                                                                         
Query: 289   gagatcgcggggaaccacaccgacgaggaggtctacgccgcgctccgcgaatgcgacatg 348
             |||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 73290 gagatcgcgggcggccacaccgacgaggaggtctacgccgtgctccgcgaatgcaacatg 73349

                            
Query: 349   gatcccaacgagacc 363
             |||||||||||||||
Sbjct: 73350 gatcccaacgagacc 73364
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>dbj|AK105353.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B01, full
           insert sequence
          Length = 647

 Score =  228 bits (115), Expect = 1e-56
 Identities = 130/135 (96%)
 Strand = Plus / Plus

                                                                       
Query: 229 atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atggcggcggctagggtttcgatcccggcggcggtgcggcggacgatccagaacatcaag 321

                                                                       
Query: 289 gagatcgcggggaaccacaccgacgaggaggtctacgccgcgctccgcgaatgcgacatg 348
           |||||||||||   |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 322 gagatcgcgggcggccacaccgacgaggaggtctacgccgtgctccgcgaatgcaacatg 381

                          
Query: 349 gatcccaacgagacc 363
           |||||||||||||||
Sbjct: 382 gatcccaacgagacc 396
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                        
Query: 320     tctacgccgcgctccgcgaatgcgacatggatcccaacgagaccgcgcagaagctcc 376
               |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 5370696 tctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctcc 5370752
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>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0015B15
          Length = 123083

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                       
Query: 320    tctacgccgcgctccgcgaatgcgacatggatcccaacgagaccgcgcagaagctcc 376
              |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 112208 tctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctcc 112264
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>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0529B09
          Length = 138188

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                     
Query: 320  tctacgccgcgctccgcgaatgcgacatggatcccaacgagaccgcgcagaagctcc 376
            |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1630 tctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctcc 1686
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>dbj|AK121282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108L12, full
           insert sequence
          Length = 2972

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 320 tctacgccgcgctccgcgaatgcgacatggatcccaacgagaccgcgcagaagctcc 376
           |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 287 tctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctcc 343
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>dbj|AK099498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028A11, full
           insert sequence
          Length = 2906

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 320 tctacgccgcgctccgcgaatgcgacatggatcccaacgagaccgcgcagaagctcc 376
           |||||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 221 tctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctcc 277
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>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 331   ctccgcgaatgcgacatggatcccaacgagaccgcgcagaagct 374
             |||||||||| | ||||||| ||||||||||| |||||||||||
Sbjct: 36328 ctccgcgaatccaacatggaccccaacgagacggcgcagaagct 36285
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>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08,
              complete sequence
          Length = 144781

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 210    ggaggaagagggagaggcgatggcggcggc 239
              |||||| |||||||||||||||||||||||
Sbjct: 122005 ggaggaggagggagaggcgatggcggcggc 122034
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>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0029B02, complete sequence
          Length = 156649

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 210   ggaggaagagggagaggcgatggcggcggc 239
             |||||| |||||||||||||||||||||||
Sbjct: 10848 ggaggaggagggagaggcgatggcggcggc 10877
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 210     ggaggaagagggagaggcgatggcggcggc 239
               |||||| |||||||||||||||||||||||
Sbjct: 4500381 ggaggaggagggagaggcgatggcggcggc 4500410
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>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
              aminoalcoholphosphotransferase, putative growth-regulating
              factor 1, putative GAG-POL precursor, putative GAG-POL
              precursor, putative RIRE2 orf3, putative anthocyanin
              regulatory C1, putative protein T30F21.6, putative copia
              polyprotein, putative copia polyprotein, putative protein
              NP_196765.1, and gb protein genes, complete cds; and
              putative zinc finger protein gene, partial cds
          Length = 144159

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 331    ctccgcgaatgcgacatggatcccaacgagaccgcgcagaagct 374
              |||||||| | | ||||||| ||||||||||| |||||||||||
Sbjct: 117643 ctccgcgagtccaacatggaccccaacgagacggcgcagaagct 117686
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>ref|XM_468448.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 217 gagggagaggcgatggcggcggc 239
           |||||||||||||||||||||||
Sbjct: 35  gagggagaggcgatggcggcggc 57
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 217      gagggagaggcgatggcggcggc 239
                |||||||||||||||||||||||
Sbjct: 35290310 gagggagaggcgatggcggcggc 35290332



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 224      aggcgatggcggcggctagggttt 247
                |||| |||||||||||||||||||
Sbjct: 27984092 aggccatggcggcggctagggttt 27984069
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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 217   gagggagaggcgatggcggcggc 239
             |||||||||||||||||||||||
Sbjct: 40644 gagggagaggcgatggcggcggc 40666
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0474F11
          Length = 139544

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 217    gagggagaggcgatggcggcggc 239
              |||||||||||||||||||||||
Sbjct: 102360 gagggagaggcgatggcggcggc 102382
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>dbj|AK103477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130D23, full
           insert sequence
          Length = 1824

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 217 gagggagaggcgatggcggcggc 239
           |||||||||||||||||||||||
Sbjct: 127 gagggagaggcgatggcggcggc 149
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>dbj|AK071291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088O08, full
           insert sequence
          Length = 1077

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 217 gagggagaggcgatggcggcggc 239
           |||||||||||||||||||||||
Sbjct: 13  gagggagaggcgatggcggcggc 35
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>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19,
              complete sequence
          Length = 174622

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 210    ggaggaagagggagaggcgatg 231
              ||||||||||||||||||||||
Sbjct: 148313 ggaggaagagggagaggcgatg 148292
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 255    ggcggcggtgcggcggacgatc 276
              ||||||||||||||||||||||
Sbjct: 987124 ggcggcggtgcggcggacgatc 987145
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 263     tgcggcggacgatccagaaca 283
               |||||||||||||||||||||
Sbjct: 2995491 tgcggcggacgatccagaaca 2995471
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>emb|Y09430.1|DMGROOVIN Drosophila melanogaster mRNA for Kakapo (kak gene)
          Length = 12989

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 12410 tcgcggggaaccacaccgacg 12430
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>gb|AY122181.1| Drosophila melanogaster LD39385 full insert cDNA
          Length = 3978

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 293  tcgcggggaaccacaccgacg 313
            |||||||||||||||||||||
Sbjct: 3377 tcgcggggaaccacaccgacg 3397
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>gb|AC109641.4| Homo sapiens BAC clone RP11-763N18 from 4, complete sequence
          Length = 81407

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   caggaggaagagggagaggcg 228
             |||||||||||||||||||||
Sbjct: 57975 caggaggaagagggagaggcg 57955
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>ref|NM_166019.1| Drosophila melanogaster short stop CG18076-RH, transcript variant H
             (shot), mRNA
          Length = 27845

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 26669 tcgcggggaaccacaccgacg 26689
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>ref|NM_166018.1| Drosophila melanogaster short stop CG18076-RC, transcript variant C
             (shot), mRNA
          Length = 16910

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 15734 tcgcggggaaccacaccgacg 15754
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>ref|NM_166017.1| Drosophila melanogaster short stop CG18076-RE, transcript variant E
             (shot), mRNA
          Length = 17126

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 15950 tcgcggggaaccacaccgacg 15970
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>ref|NM_166016.1| Drosophila melanogaster short stop CG18076-RB, transcript variant B
             (shot), mRNA
          Length = 17803

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 16627 tcgcggggaaccacaccgacg 16647
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>ref|NM_166015.1| Drosophila melanogaster short stop CG18076-RG, transcript variant G
             (shot), mRNA
          Length = 17788

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 16612 tcgcggggaaccacaccgacg 16632
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>ref|NM_079009.2| Drosophila melanogaster short stop CG18076-RA, transcript variant A
             (shot), mRNA
          Length = 18026

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 16850 tcgcggggaaccacaccgacg 16870
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>gb|AC099008.1| Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone
             BACR16G12, complete sequence
          Length = 154681

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 82186 tcgcggggaaccacaccgacg 82206
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>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone
              BACR06M19, complete sequence
          Length = 183161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 293    tcgcggggaaccacaccgacg 313
              |||||||||||||||||||||
Sbjct: 165617 tcgcggggaaccacaccgacg 165637
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 308     ccgacgaggaggtctacgccgcgct 332
               ||||||||||||||||| |||||||
Sbjct: 7161381 ccgacgaggaggtctactccgcgct 7161357
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>gb|AF200425.1|AF200425 Drosophila melanogaster Short stop/Kakapo long isoform (shot) mRNA,
             complete cds
          Length = 16798

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 15629 tcgcggggaaccacaccgacg 15649
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>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0489D11
          Length = 150757

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 306   caccgacgaggaggtctacgccgcg 330
             ||||||||||||| |||||||||||
Sbjct: 24801 caccgacgaggagatctacgccgcg 24777
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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1210_A07
          Length = 131394

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 306   caccgacgaggaggtctacgccgcg 330
             ||||||||||||| |||||||||||
Sbjct: 80296 caccgacgaggagatctacgccgcg 80272
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>gb|AC005977.3|AC005977 Drosophila melanogaster, chromosome 2R, region 50C6-50C8, P1 clone
             DS04160, complete sequence
          Length = 69330

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 293   tcgcggggaaccacaccgacg 313
             |||||||||||||||||||||
Sbjct: 41407 tcgcggggaaccacaccgacg 41427
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>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the
            complete sequence
          Length = 287287

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 293  tcgcggggaaccacaccgacg 313
            |||||||||||||||||||||
Sbjct: 6623 tcgcggggaaccacaccgacg 6603
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>ref|XM_476782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2040

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 64  ggcggcggctagggtttcga 83
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>ref|XM_507353.1| PREDICTED Oryza sativa (japonica cultivar-group), P0496D04.23-2
           mRNA
          Length = 2082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 64  ggcggcggctagggtttcga 83
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>ref|XM_506190.1| PREDICTED Oryza sativa (japonica cultivar-group), P0496D04.23-2
           mRNA
          Length = 2082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 64  ggcggcggctagggtttcga 83
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 294     cgcggggaaccacaccgacgaggaggtc 321
               |||||||| | |||||||||||||||||
Sbjct: 2245650 cgcggggagcgacaccgacgaggaggtc 2245623
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>gb|AY233333.1| Escherichia coli strain ECOR31 high pathogenicity island, complete
             sequence
          Length = 40365

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tcccggcggcggtgcggcgg 270
             ||||||||||||||||||||
Sbjct: 14633 tcccggcggcggtgcggcgg 14614
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>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene
             cluster, complete sequence
          Length = 138203

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   cggcggcggtgcggcggacg 273
             ||||||||||||||||||||
Sbjct: 45452 cggcggcggtgcggcggacg 45471
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>ref|XM_846360.1| PREDICTED: Canis familiaris similar to PHD finger protein 21B
           (LOC609150), mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gggagaggcgatggcggcgg 238
           ||||||||||||||||||||
Sbjct: 759 gggagaggcgatggcggcgg 740
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>emb|AL445307.8| Human DNA sequence from clone RP5-826L7 on chromosome 6 Contains part
             of a novel gene and a CpG island, complete sequence
          Length = 26478

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aggaggaagagggagaggcg 228
             ||||||||||||||||||||
Sbjct: 19343 aggaggaagagggagaggcg 19362
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>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    cggcggcggtgcggcggacg 273
              ||||||||||||||||||||
Sbjct: 180063 cggcggcggtgcggcggacg 180082
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>gb|BC076508.1| Danio rerio procollagen-proline, 2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), alpha polypeptide 2, mRNA (cDNA
            clone MGC:91948 IMAGE:7041079), complete cds
          Length = 1970

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  gatccagaacatcaaggagatcgc 296
            ||||||||| ||||||||||||||
Sbjct: 1192 gatccagaagatcaaggagatcgc 1215
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>dbj|AK080724.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930019P04 product:unclassifiable, full insert
            sequence
          Length = 2806

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  acaggaggaagagggagagg 226
            ||||||||||||||||||||
Sbjct: 1421 acaggaggaagagggagagg 1402
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     ggcggcggctagggtttcga 250
               ||||||||||||||||||||
Sbjct: 3882413 ggcggcggctagggtttcga 3882394



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     ggcggcggctagggtttcga 250
               ||||||||||||||||||||
Sbjct: 2602730 ggcggcggctagggtttcga 2602749
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 230      tggcggcggctagggtttcg 249
                ||||||||||||||||||||
Sbjct: 30736513 tggcggcggctagggtttcg 30736494
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>ref|NM_001007285.1| Danio rerio procollagen-proline, 2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), alpha polypeptide 2 (p4ha2),
            mRNA
          Length = 1970

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  gatccagaacatcaaggagatcgc 296
            ||||||||| ||||||||||||||
Sbjct: 1192 gatccagaagatcaaggagatcgc 1215
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>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0021A09
          Length = 127973

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   tggcggcggctagggtttcg 249
             ||||||||||||||||||||
Sbjct: 25788 tggcggcggctagggtttcg 25769
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ggcggcggctagggtttcga 250
              ||||||||||||||||||||
Sbjct: 121525 ggcggcggctagggtttcga 121506
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>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ggcggcggctagggtttcga 250
             ||||||||||||||||||||
Sbjct: 28448 ggcggcggctagggtttcga 28467
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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   aggcgatggcggcggctagggttt 247
             |||| |||||||||||||||||||
Sbjct: 27754 aggccatggcggcggctagggttt 27731
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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 224    aggcgatggcggcggctagggttt 247
              |||| |||||||||||||||||||
Sbjct: 111544 aggccatggcggcggctagggttt 111521
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>dbj|AK098899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B06, full
           insert sequence
          Length = 2083

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 65  ggcggcggctagggtttcga 84
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>dbj|AK098856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J22, full
           insert sequence
          Length = 2040

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 64  ggcggcggctagggtttcga 83
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>dbj|AK065275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L11, full
           insert sequence
          Length = 2082

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 ggcggcggctagggtttcga 250
           ||||||||||||||||||||
Sbjct: 64  ggcggcggctagggtttcga 83
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>emb|AL596384.17| Mouse DNA sequence from clone RP23-353J21 on chromosome 11, complete
              sequence
          Length = 219695

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    acaggaggaagagggagagg 226
              ||||||||||||||||||||
Sbjct: 139083 acaggaggaagagggagagg 139102
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>gb|U14555.1|GGU14555 Gallus gallus zinc-finger protein mRNA, partial cds
          Length = 2226

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 209 aggaggaagagggagaggcgatgg 232
           ||||||||||||| ||||||||||
Sbjct: 404 aggaggaagagggggaggcgatgg 427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,689,225
Number of Sequences: 3902068
Number of extensions: 1689225
Number of successful extensions: 54583
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53933
Number of HSP's gapped (non-prelim): 650
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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