>SMF_ECOLI (P30852) Protein smf|
          Length = 374

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 162 AKTPQQTPPVCITAEKGIVPTPSIIFQLLEIGFTVGDVAVLP----RSGTGCMLRRSN 323
           A    +  PV + AE+   P P ++ QLLE+    G +A +P    R    C +RR+N
Sbjct: 315 ANVGDEVTPVDVVAERAGQPVPEVVTQLLELEL-AGWIAAVPGGYVRLRRACHVRRTN 371

>ILVR_CAUCR (P52670) HTH-type transcriptional regulator ilvR (Isoleucine|
           biosynthesis transcriptional activator)
          Length = 296

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 126 VAARGQPWTLPPAKTPQQTPPVCITAEKGIVPTPSIIFQLLEIGFTVGDVAVLPRSGTGC 305
           VAARGQP  +       QT    ++A  G+   P+ + +L  +G    D+   P   TG 
Sbjct: 211 VAARGQPVRIVQEAIQMQTIISLVSAGLGMALAPASLRKLARVGVRYVDLVDPPILETGL 270

Query: 306 MLRR 317
           + RR
Sbjct: 271 VWRR 274

>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +3

Query: 144  PWTLPPAKTPQQTPPVCITAEKGIVPTPS----IIFQLLEIGFTVGDVAVLPRSGTG 302
            PWT  P       P VC+   K IVP  S    I+F L+ I   V  +  +   G G
Sbjct: 864  PWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVG 920

>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 155 QRPWLAAGGDEARGGAPEATRRGGVAGGDEA 63
           + P    G DEA GGA  A    G A G++A
Sbjct: 184 EAPAAEGGKDEAAGGAAAAAAEAGAASGEQA 214

>METB_ECOLI (P00935) Cystathionine gamma-synthase (EC 2.5.1.48) (CGS)|
           (O-succinylhomoserine (thiol)-lyase)
          Length = 386

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +2

Query: 230 NNLSITGNRVHSW----GCGSVTKEWDRVYAQKVQLLTFLSTLPESALSYGPSAETNMAN 397
           NN+ +TG    S+    G  ++    +        ++ +L T P     Y PS   N  +
Sbjct: 227 NNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGH 286

Query: 398 SIEQREQK 421
            I  R+QK
Sbjct: 287 EIAARQQK 294

>NELFA_MOUSE (Q8BG30) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 homolog) (mWHSC2)
          Length = 530

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 150 TLPPAKTPQ-QTPPVCITAEKGIVPTP 227
           T PPA TP  QTPPV + A +   P P
Sbjct: 398 TTPPAVTPTAQTPPVAMVAPQTQAPAP 424

>YIH7_YEAST (P40508) Hypothetical 36.9 kDa protein in THS1-SEC28 intergenic|
           region
          Length = 320

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = +2

Query: 179 DPSGMYYRRKRNRPDPINNLSITGNRVHSW-----GCGSVTKEWDRV 304
           DP G+Y  + R  PDPI         + SW     G  S +  W+ +
Sbjct: 218 DPIGLYRNKGRKSPDPIEGEQNDSPVLSSWEKIRNGDNSSSSSWENI 264

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 152 RPWLAAGGDEAR-GGAPEATRRGGVAGG 72
           RP  +AGG   R GGAP A R GG  GG
Sbjct: 265 RPGPSAGGRPGRPGGAPGAGRPGGGGGG 292

>PARVB_MOUSE (Q9ES46) Beta-parvin|
          Length = 365

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 418 LFSLLDRIGHISFSTRPITQSRLGQSRKES**L----DLLSIHPVPLLGN 281
           L  LL+++ H   +   +TQS +GQ +K    L    DLL  H  PL  N
Sbjct: 122 LQKLLEKLAHCKLNVAEVTQSEIGQKQKLQTVLEAVQDLLRPHGWPLRWN 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,713,470
Number of Sequences: 219361
Number of extensions: 1050583
Number of successful extensions: 3535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3528
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)