ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl40h06 |
|---|---|
| Clone Library Name | barley_pub |
>HOX1A_MAIZE (P46605) Homeobox protein HOX1A| Length = 719 Score = 33.1 bits (74), Expect = 0.28 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +1 Query: 316 RGRKGSQITASKKYLRRSAHSSARVLRSTSKDR 414 RG+KGSQ + Y S++S RVLRSTS + Sbjct: 57 RGKKGSQGLTGQAYTLMSSNSDVRVLRSTSSSK 89
>PGLRX_COCCA (Q00359) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)| (Galacturan 1,4-alpha-galacturonidase) (Poly(1,4-alpha-D-galacturonide)galacturonohydrolase) Length = 446 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -2 Query: 220 PPTDLLCGN**ASPG-RLRVSLVELLSGGEDDPANFFRSIEMCRGLAAASAPRAWRF 53 PP L G + PG R + +++ L GG+DD AN +++ C P+ +F Sbjct: 36 PPVPFLPGKASSVPGSRNKTCMLKALGGGKDDSANILSAVKQCNNGGHVVFPKGQQF 92
>RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC 3.5.-.-)| (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) Length = 739 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 241 TSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYL 360 +++S V+EN+ VGN ++ PP G R R G+ K+ L Sbjct: 63 STSSAEVKENRNVGNLAARPPPSGDRARGGAPGAKRKRPL 102
>YJY1_SCHPO (Q9USN8) Hypothetical protein C132.01c in chromosome III| Length = 1021 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%) Frame = +1 Query: 283 NDSSSPPTKG--------KRGRKGSQITASKKYLRRSAHSSARVLRSTS 405 N+ S+P T G KRG+KGS++ +KK + + R R T+ Sbjct: 751 NNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTA 799
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +1 Query: 235 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDR 414 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSRTN 302 Query: 415 VG 420 G Sbjct: 303 GG 304
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +1 Query: 235 DKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSSARVLRSTSKDR 414 D +SA QE+ + PPT+G+ R+G + A RRSA R R+ S+ Sbjct: 245 DNSSAQAPRQEDSRPARARPGPPTRGR--RRGRRPAAPGPASRRSARLRRRQPRTNSRTN 302 Query: 415 VG 420 G Sbjct: 303 GG 304
>UNC87_CAEEL (P37806) Uncoordinated protein 87 (Protein unc-87)| Length = 576 Score = 29.6 bits (65), Expect = 3.1 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +2 Query: 83 GEAPAHFYRPKKVSWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIW 235 GE P Y KVS I PS+ +NK + T P + G+ IW Sbjct: 514 GELP---YEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDVKGKHLKRIW 561
>GYRA_RICPR (P41080) DNA gyrase subunit A (EC 5.99.1.3)| Length = 905 Score = 29.6 bits (65), Expect = 3.1 Identities = 23/88 (26%), Positives = 42/88 (47%) Frame = +2 Query: 113 KKVSWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSFIWTKHLLLVLFRRIKKLGMIH 292 K+V + S+K+ K R+GLS+ E + + F+ + H ++ F I K+ + Sbjct: 541 KRVPLSSYRSQKRGGKG-----RSGLSMRDEDITTQV-FVGSTHTPMLFFSNIGKVYSLK 594 Query: 293 HLLLPRGKGEGKGPRLQQVKSISGDLHI 376 LP +GKG + + S+ + HI Sbjct: 595 LYKLPLSNPQGKGRPMVNILSLQENEHI 622
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 29.3 bits (64), Expect = 4.0 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Frame = +1 Query: 166 P*VSQDWPISSRREGRSAVIIYMDKTSASGL---VQENKKVGNDSSSPPTKGKRGRKGSQ 336 P S P+ + S + TS S Q ++ G +SSP T +R RKG + Sbjct: 197 PVTSSTPPVGDSTDSASRAALPEPSTSVSPERPPSQTARRYGRKASSPSTTSRRQRKGQR 256 Query: 337 ITASKKYLRRSAHSSARVLRSTSK 408 T + R+S S RST++ Sbjct: 257 ETTGTQRRRKSRSRS----RSTNR 276
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 178 QDWPISSRREGR-SAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKK 354 Q+ ++SRR R SA K+ + ++K + S +KGK + S+++ S++ Sbjct: 320 QEEEVTSRRGSRRSAPTKAKGKSKTASKTSKSKSKASSKSKSKSKGKGQARASKLSKSRR 379 Query: 355 YLRRSAHSS 381 Y+ SS Sbjct: 380 YVNAVDSSS 388
>TTKA_DROME (P42282) Protein tramtrack, alpha isoform (Tramtrack p88)| (Repressor protein fushi tarazu) Length = 813 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = +1 Query: 229 YMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKYLRRSAHSS 381 Y + + QE+ +++PP + G+KG++ ++ +RR A S+ Sbjct: 531 YQGNEAEATPAQEDSPAAETATAPPPAPRSGKKGAKRPIQRRRVRRKAQST 581
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 28.5 bits (62), Expect = 6.9 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Frame = +1 Query: 196 SRREGRSAVIIYMDKTSASGLVQENKKVGNDSSSPPTKGKRGRKGSQITASKKY------ 357 S R+G Y D S + GN S+PPT+G G S +Y Sbjct: 261 SDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG----GSSRYDDYSSS 316 Query: 358 ------LRRSAHSSARVLRSTSKDRVG 420 R S SS L S+ +DRVG Sbjct: 317 RDGYGGSRDSYSSSRSDLYSSGRDRVG 343
>CJ047_HUMAN (Q86WR7) Protein C10orf47| Length = 435 Score = 28.5 bits (62), Expect = 6.9 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Frame = +2 Query: 2 SPSCSRRRSREGVLEAAKSPGARCRGRGEAPAHFYRPKKVSWVIFPSRKQFNKAYPKSPR 181 SP+ R R G + G R G P+H +PK FPS + PR Sbjct: 212 SPTSPFREGRPGEWRTPAARGPRSGDPGPGPSHPAQPKAPR---FPSNIIVTNGAAREPR 268 Query: 182 TGLSVPAEKV-GRRSSFIWTKH 244 LS A V RR+ + T H Sbjct: 269 RTLSRAAVSVQERRAQVLATIH 290
>RL7_CAEEL (O01802) 60S ribosomal protein L7| Length = 244 Score = 28.1 bits (61), Expect = 9.0 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 8/105 (7%) Frame = +2 Query: 50 AKSPGARCRGRGEAPAHFYRPKKVSWVIFPSRKQFNKAYPKSPRTGLSVPAEKVGRRSSF 229 A+ G R + EA FY P + + N+ +PK PR L + + F Sbjct: 60 AQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK-PRKALQILRLRQINNGVF 118 Query: 230 IWTKHLLLVLFRRIKKL--------GMIHHLLLPRGKGEGKGPRL 340 + L L R I+ IH LL RG + G R+ Sbjct: 119 VKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRV 163
>SKB1_MOUSE (Q8CIG8) Protein arginine N-methyltransferase 5 (EC 2.1.1.-) (Shk1| kinase-binding protein 1 homolog) (SKB1 homolog) (Jak-binding protein 1) Length = 636 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +3 Query: 195 FPQRRSVGGHHLYGQNIC--FWSCSGE*KSW 281 FP ++ + H GQNIC FW CS K W Sbjct: 583 FPIKQPITVHE--GQNICVRFWRCSNSKKVW 611
>PRP5_NEUCR (Q7SH33) Pre-mRNA-processing ATP-dependent RNA helicase prp-5 (EC| 3.6.1.-) Length = 1194 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 17 RRRSREGVLEAAKSPGARCRGRGEAPAHFYRPKK 118 RRRSR+ L+ +SP R R R P YRP++ Sbjct: 91 RRRSRDRGLDRLRSPDRR-RDRSRDPDREYRPRR 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,311,996 Number of Sequences: 219361 Number of extensions: 1513209 Number of successful extensions: 3917 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3916 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
