ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40h02 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 92.0 bits (227), Expect = 7e-19 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 12/124 (9%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLDLNEIVKFGRHSVVVYGDEAGKPAVGHGLNKAAEV 180 V DF +GR YG + F G ++ L+L++IV R V+VY D+ KP VG GLN+ AEV Sbjct: 761 VSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVIVYVDDNQKPPVGEGLNRKAEV 820 Query: 181 TL-------KLDLSTLPKPGVLVEL-----LRCRTKKQGARFLSFNPVNGNWKFQVDHFS 324 TL K + P L ++ L ++KQGA+F + P G+W F+V HFS Sbjct: 821 TLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFS 880 Query: 325 RFGL 336 ++GL Sbjct: 881 KYGL 884
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 92.0 bits (227), Expect = 7e-19 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 12/124 (9%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLDLNEIVKFGRHSVVVYGDEAGKPAVGHGLNKAAEV 180 V DF +GR YG + F G ++ L+L++IV R VVVY D+ KP VG GLN+ AEV Sbjct: 762 VSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEV 821 Query: 181 TL-------KLDLSTLPKPGVLVEL-----LRCRTKKQGARFLSFNPVNGNWKFQVDHFS 324 TL K + P L ++ L ++KQGA+F + P G+W F+V HFS Sbjct: 822 TLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFS 881 Query: 325 RFGL 336 ++GL Sbjct: 882 KYGL 885
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 61.6 bits (148), Expect = 9e-10 Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 18/130 (13%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLD-------LNEIVKF-GRHSVVVYGDEAGKPAVGH 156 V +FV+GR YG + F D+ +IV F +V VY DEA KP +GH Sbjct: 481 VSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVEVYPDEATKPMIGH 540 Query: 157 GLNKAAEVTL----------KLDLSTLPKPGVLVELLRCRTKKQGARFLSFNPVNGNWKF 306 GLN A +TL K + K R + ++S+NP G W F Sbjct: 541 GLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTF 600 Query: 307 QVDHFSRFGL 336 +V+HFS +GL Sbjct: 601 KVNHFSIWGL 610
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 58.5 bits (140), Expect = 8e-09 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 14/126 (11%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLDLNE-----IVKFGRHSVVVYGDEAGKPAVGHGLN 165 V F VGR YGQV F D+ G + E +V F R VY E P +G GLN Sbjct: 816 VHQFSVGRTGYGQVAFLKPVDLSGFEKLEDIPGKVVVFERKICAVYPVEGSSPPLGEGLN 875 Query: 166 KAAEVTLK----LDLSTL-----PKPGVLVELLRCRTKKQGARFLSFNPVNGNWKFQVDH 318 A +TL+ L T P+ ++ ++ + + F+ FN +G W F+V H Sbjct: 876 VPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKDTEFIDFN--DGKWIFKVQH 933 Query: 319 FSRFGL 336 FSR+GL Sbjct: 934 FSRYGL 939
>NU100_YEAST (Q02629) Nucleoporin NUP100/NSP100 (Nuclear pore protein| NUP100/NSP100) Length = 959 Score = 45.1 bits (105), Expect = 9e-05 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLDLN----EIVKFGRHSVVVYGDEAGKPAVGHGLNK 168 + + V+G YG+V+F D+ L+ ++V FG S +Y + + KP G G+N Sbjct: 837 INNLVIGHRNYGKVEFLEPVDLLNTPLDTLCGDLVTFGPKSCSIYENCSIKPEKGEGINV 896 Query: 169 AAEVTL----KLDLST-LPKPGVLVELLRCRTKKQGA----RFLSFNPVNGNWKFQVDH 318 VTL +D T P + LL+ K +F S++PV G + + +DH Sbjct: 897 RCRVTLYSCFPIDKETRKPIKNITHPLLKRSIAKLKENPVYKFESYDPVTGTYSYTIDH 955
>NU116_YEAST (Q02630) Nucleoporin NUP116/NSP116 (Nuclear pore protein| NUP116/NSP116) Length = 1113 Score = 45.1 bits (105), Expect = 9e-05 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%) Frame = +1 Query: 1 VPDFVVGRVRYGQVKFSGSTDVRGLDLNE----IVKFGRHSVVVYGDEAGKPAVGHGLNK 168 VP VVG YG+++F D+ G+ L I+ F + ++Y + +P G G+N Sbjct: 990 VPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPKRGEGINV 1049 Query: 169 AAEVT----LKLDLSTL-----PKPGVLVELLRCRTKKQGARFLSFNPVNGNWKFQVDH 318 A +T +D ST P ++ + K ++F S++ +G + F V+H Sbjct: 1050 RARITCFNCYPVDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNH 1108
>AGRN_RAT (P25304) Agrin precursor| Length = 1959 Score = 34.3 bits (77), Expect = 0.16 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Frame = -2 Query: 253 SSCGTLATRLGHRVSEVYSNPASASPPRLYLSHALRP----ACQPRPRKPPQNGGQT*RF 86 ++ GT A R + V PAS+ PR+Y SH RP P R+PP R Sbjct: 1153 AATGTTAAMATARATTVSRLPASSVTPRVYPSHTSRPVGRTTAPPTTRRPPTTATNMDRP 1212 Query: 85 RS--GPAPSRRC 56 R+ PS+ C Sbjct: 1213 RTPGHQQPSKSC 1224
>GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 33.1 bits (74), Expect = 0.36 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = -2 Query: 199 SNPASASPPRLYLSHALRPACQPRPRKP---PQNGG 101 S P++ PPR L AL P+ +PRP KP NGG Sbjct: 115 SGPSTQPPPRSALYPALTPSIKPRPSKPQVLSDNGG 150
>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 33.1 bits (74), Expect = 0.36 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = -2 Query: 199 SNPASASPPRLYLSHALRPACQPRPRKP---PQNGG 101 S P++ PPR L AL P+ +PRP KP NGG Sbjct: 115 SGPSTQPPPRSALYPALTPSIKPRPSKPQVLSDNGG 150
>GAG_MSVFR (P29175) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] Length = 309 Score = 32.0 bits (71), Expect = 0.80 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 199 SNPASASPPRLYLSHALRPACQPRPRKP 116 S P++ PPR L AL P+ +PRP KP Sbjct: 115 SGPSTQPPPRSALYPALTPSIKPRPSKP 142
>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor| Length = 226 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Frame = -2 Query: 466 SQDEQATNAKAPAHAHLEVG-----LLLQQPVVEQPAH----PWQHHLPPRP 338 SQ ++ P H H+ VG ++ QQP++ P H P QHH P P Sbjct: 85 SQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVPGHHSMTPNQHHQPNLP 136
>SALM_DROVI (P39806) Homeotic protein spalt-major| Length = 1402 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = -1 Query: 212 FGSVLKSSFSVTSAALFKPCPTAGLPASSP*TTTEWRPNLTISFRSSPLTSVLP 51 F L S S+ P P GLP S T T+ +P++ SF SSP LP Sbjct: 503 FHPPLLDQMSPDSSPTQSPAPATGLPPPSTSTLTQMQPSM--SFASSPAFPGLP 554
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 30.4 bits (67), Expect = 2.3 Identities = 29/110 (26%), Positives = 38/110 (34%) Frame = -2 Query: 430 AHAHLEVGLLLQQPVVEQPAHPWQHHLPPRPQAQTY*SGRPGTSSYHSQD*MRET*RLAS 251 A AH VG L +P Q P P P + RP + Sbjct: 2883 APAHTPVGALAPRPQKTQAQRPQDAAALPTPTIKAV-GARP----------------VPK 2925 Query: 250 SCGTLATRLGHRVSEVYSNPASASPPRLYLSHALRPACQPRPRKPPQNGG 101 + G LA R + P++ASPPR+ L R P PP + G Sbjct: 2926 ATGALAAGARPRGQPTAAPPSAASPPRVSLPVRSRQQQSPAIPLPPMHSG 2975
>GAG_MLVBM (P29167) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 199 SNPASASPPRLYLSHALRPACQPRPRKP 116 S P++ PPR L A P+ +PRP KP Sbjct: 115 SGPSTQPPPRSALYPAFTPSIKPRPSKP 142
>ATG4C_MOUSE (Q811C2) Cysteine protease ATG4C (EC 3.4.22.-) (Autophagy-related| protein 4 homolog C) (Autophagin-3) (Autophagy-related cysteine endopeptidase 3) (AUT-like 3 cysteine endopeptidase) Length = 458 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +1 Query: 40 VKFSGSTDVRGLDLNEIVKFGRHSVVVYGDEAGKPAVGHGLNKAAEVTLKLDLSTL 207 + + G + V L+ +++FG+ S GD G V H L KA E DL L Sbjct: 201 ISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGL 256
>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development| regulatory protein 2) (p36) Length = 850 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 436 APAHAHLEVGLLLQQPVVEQPAHPW---QHHLPPRPQAQ 329 APA+AHL+ LL QP + P + Q PPRP Q Sbjct: 323 APAYAHLQSHQLLPQPPAKHPQPQFVAQQQPQPPRPAPQ 361
>SPN90_MOUSE (Q9ESJ4) SH3 adapter protein SPIN90 (NCK-interacting protein with| SH3 domain) (SH3 protein interacting with Nck, 90 kDa) (VacA-interacting protein, 54 kDa) (VIP54) (N-WASP-interacting protein, 90kDa) (Wiskott-Aldrich syndrome protein-binding Length = 714 Score = 30.0 bits (66), Expect = 3.1 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Frame = -2 Query: 358 HHLPPRPQAQTY*SGRPGTSSYHSQD*MRET*RLASSCGTLATRLGHRVSEVYSNPASAS 179 + +PP+P+ P T + RE ++ S G A G S+ +S S Sbjct: 161 YQVPPQPRRAA-----PTTPPPPVKRRDREALVISGSGGRTAIPSGGSSVSSGSSASSTS 215 Query: 178 PPRLYLSHA---LRPACQPRPRKPPQNGGQT*RFRSGPAPSR 62 LY + L P+C P P P+ G T + P+PS+ Sbjct: 216 MDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQPSPSK 257
>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)| Length = 741 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Frame = -2 Query: 199 SNPASASPPRLYLSHALRPACQPRPR-----KPPQNGGQT*RFRSGPAPSRRCCQRT*PA 35 S+P SA P + + L + QP PR +PP G P +R + P Sbjct: 172 SSPVSAGPAQTQSNQGLPCSSQPLPRESSTSQPPSQAG----------PQKRITSKLQPP 221 Query: 34 HTSPCRRRNL 5 P R RNL Sbjct: 222 RALPVRGRNL 231
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Frame = -1 Query: 239 LSNSTRTPGFGSVLKS-SFSVTSAALFKPCPTAGLPASSP*TTTEWRPNLTISFRSSPLT 63 +S ST TP + ++S S + TS A T+ SS T+ P+ T S P T Sbjct: 307 MSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSS--PSSTTLSTSIPTT 364 Query: 62 ---------SVLPENLTCPYLTLPTTKS 6 S LP+N C YL TT + Sbjct: 365 TTPEITSTLSSLPDNAICSYLDETTTST 392
>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)| (p19ARF) Length = 173 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = -2 Query: 169 LYLSHALRPACQPRPRKPPQNGGQT*RFRSGPAPSRRCCQRT*PAHTSPCRRR 11 L L + R QP PR+P + GQ + AP RR Q P H+ P R R Sbjct: 88 LMLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAP-RRGAQLRRPRHSHPTRAR 139
>RS5_CHLTE (Q8KAI8) 30S ribosomal protein S5| Length = 172 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +1 Query: 94 KFGRHSVVVYGDEAGKPAVGHGLNKAAEV 180 +FG +++VV GD+ G VG+GL KA EV Sbjct: 35 RFGFNAIVVVGDKEGH--VGYGLGKANEV 61
>RS5_CHLCH (Q3APJ0) 30S ribosomal protein S5| Length = 172 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +1 Query: 94 KFGRHSVVVYGDEAGKPAVGHGLNKAAEV 180 +FG +++VV GD+ G VG+GL KA EV Sbjct: 35 RFGFNAIVVVGDKEGH--VGYGLGKANEV 61
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = -1 Query: 155 CPTAGLPASSP*TTTEWRPNLTIS---FRSSPLTSVLPENLTCPYLTLPTTKS 6 CP + LP +SP T + +T+S F P TS P P L+L + S Sbjct: 879 CPWSSLPTTSPPTFSPTCSQVTLSSPFFPPCPSTSSFPSTTAAPLLSLASAFS 931
>RS5_PELLD (Q3B6E5) 30S ribosomal protein S5| Length = 171 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +1 Query: 94 KFGRHSVVVYGDEAGKPAVGHGLNKAAEV 180 +FG +++VV GD+ G VG+GL KA EV Sbjct: 34 RFGFNAIVVVGDKEGH--VGYGLGKANEV 60
>ICEN_PSESY (P06620) Ice nucleation protein| Length = 1200 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -1 Query: 230 STRTPGFGSVLKSSFSVTSAALFKPCPTAGLPASSP*TTTEWRPNLTISFRSS 72 ST T GF S L S + T A +K TAG ++ T E+ +LT + S+ Sbjct: 900 STSTAGFASSLISGYGSTQTAGYKSTLTAGYGSTQ---TAEYGSSLTAGYGST 949
>METK_PINBN (P50300) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/78 (30%), Positives = 35/78 (44%) Frame = -2 Query: 427 HAHLEVGLLLQQPVVEQPAHPWQHHLPPRPQAQTY*SGRPGTSSYHSQD*MRET*RLASS 248 H + V + Q P + Q H H RP+ +G G ++ D ET L Sbjct: 89 HCKVLVNIEQQSPDIAQGVHG---HFTKRPEEIG--AGDQGHMFGYATD---ETLELMPK 140 Query: 247 CGTLATRLGHRVSEVYSN 194 C LAT+LG +++EV N Sbjct: 141 CHVLATKLGAKLTEVRKN 158
>RAB26_RAT (P51156) Ras-related protein Rab-26| Length = 257 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 223 GHRVSEVYSNPASASPPRLYLSHALRPACQPRPRKPPQNG 104 G V + PA+A+ PRL RP + P PPQ+G Sbjct: 11 GGSVPAASTLPAAANGPRLAHPRTARPGPEAPPNGPPQSG 50
>PHOSP_MUMPM (P16595) Phosphoprotein (Protein P)| Length = 391 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 190 ASASPPRLYLSHALRPACQPRPRKPPQ 110 +S P LYL RP +PRP K P+ Sbjct: 309 SSGEEPTLYLDELARPVPKPRPAKQPK 335
>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1048 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -2 Query: 382 EQPAHP--WQHHLPPRPQAQTY*SGRPGTSSYHSQD 281 EQPA P WQ+H P RPG++++ SQD Sbjct: 264 EQPAQPNGWQYHSP----------SRPGSTAFPSQD 289
>ATIN_EHV4 (Q00028) Alpha trans-inducing protein (Vmw65) (ICP25) (VP16| protein) (Alpha-TIF) Length = 454 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Frame = -1 Query: 278 NERNLAPCFFVRHLSNSTRTPGFGSVLKSSFSVTSAALFKP-CPTAGLPASSP*TTTEWR 102 N P F + S S R G + S+ T+ A+ P P+A LP Sbjct: 361 NAHPSTPLFPLAEHSYSKRIDG-----RLSYGTTAEAMMDPPSPSAVLPGDPV------- 408 Query: 101 PNLTISFRSSPLTSVLPENLT 39 P LT+ R + T LP NLT Sbjct: 409 PPLTVGIRQTAETLALPSNLT 429
>LACD1_STRMU (P26425) Tagatose 1,6-diphosphate aldolase 1 (EC 4.1.2.40)| (Tagatose-bisphosphate aldolase 1) (D-tagatose-1,6-bisphosphate aldolase 1) Length = 325 Score = 28.5 bits (62), Expect = 8.9 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Frame = +1 Query: 109 SVVVYGDEAGKPAVGH-----GLNKAAEVTLKLDLSTLPKPGVLVELLRCRTKKQGA--- 264 S ++ E G PA H GL A E T ST P LVE R KKQGA Sbjct: 65 SSMLLDPEYGLPAAKHLDKNAGLLLAYEKTGYDTTSTKRLPDCLVEWSAKRLKKQGADAV 124 Query: 265 RFLSFNPVNGN 297 +FL + V+G+ Sbjct: 125 KFLLYYDVDGD 135
>BCHE_SYNY3 (Q55373) Magnesium-protoporphyrin IX monomethyl ester [oxidative]| cyclase (EC 1.14.13.-) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) Length = 499 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%) Frame = +3 Query: 3 SRFRRRQGEVWAG*VLWQHRREGA--------GPERNRQVWPPFC 113 +R+R R + +A ++W HR G P N+ +W FC Sbjct: 216 ARWRHRDPKKFAQEIVWLHRTHGVQLFNLADENPTVNKAIWQEFC 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,858,266 Number of Sequences: 219361 Number of extensions: 1499669 Number of successful extensions: 4761 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4742 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
