ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 2e-30
2gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
4gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
5dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
6ref|XM_513683.1| PREDICTED: Pan troglodytes similar to TTF2 prot... 44 0.40
7gb|BC015341.1| Homo sapiens transcription termination factor, RN... 44 0.40
8gb|BC030058.1| Homo sapiens transcription termination factor, RN... 44 0.40
9ref|NM_003594.3| Homo sapiens transcription termination factor, ... 44 0.40
10emb|AL391476.20| Human DNA sequence from clone RP11-229A19 on ch... 44 0.40
11gb|AF080255.1|AF080255 Homo sapiens lodestar protein mRNA, compl... 44 0.40
12gb|AF073771.1|AF073771 Homo sapiens RNA polymerase II terminatio... 44 0.40
13ref|NM_104097.3| Arabidopsis thaliana catalytic AT1G52160 mRNA, ... 42 1.6
14emb|AJ966425.1| Festuca rubra chloroplast ACCase gene for acetyl... 42 1.6
15gb|BT000791.1| Arabidopsis thaliana clone RAFL07-09-G16 (R10701)... 42 1.6
16gb|AY117303.1| Arabidopsis thaliana unknown protein (At1g52160) ... 42 1.6
17gb|AY070061.1| Arabidopsis thaliana unknown protein (At1g52160) ... 42 1.6
18dbj|AK222156.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 1.6
19gb|AC022354.1|AC022354 Arabidopsis thaliana chromosome 1 BAC F9I... 42 1.6
20gb|AC135101.24| Medicago truncatula clone mth2-18a18, complete s... 40 6.3
21gb|BC041737.1| Xenopus laevis eukaryotic initiation factor 5 (eI... 40 6.3
22gb|AC140031.22| Medicago truncatula clone mth2-24d16, complete s... 40 6.3
23gb|AC091955.2| Homo sapiens chromosome 5 clone RP11-429P5, compl... 40 6.3
24gb|AF123462.1|DJ526N18 Homo sapiens BAC526N18 neurexin III gene,... 40 6.3
25emb|AL928678.16| Mouse DNA sequence from clone RP23-273B19 on ch... 40 6.3
26dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                           
Query: 334     cttgtggacgaggaggaagatgatgttgccatggatgagccggttgttcgacaaccggtt 393
               |||||||||||||||||||| |||||||  |||||||||  ||||||||| || ||  ||
Sbjct: 3841963 cttgtggacgaggaggaagaggatgttgtgatggatgaggtggttgttcggcagcctatt 3842022

                                                                           
Query: 394     gctgaagcaagagacccacctccaaatgggcatgagctggagctttcgcattcgttgcct 453
               || |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 3842023 gcggaagtaagagacccacctgcaaatggtcatgagctggagctttcacgttcgttgcct 3842082

                          
Query: 454     gctcatcttgg 464
               |||||||||||
Sbjct: 3842083 gctcatcttgg 3842093
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                          
Query: 334    cttgtggacgaggaggaagatgatgttgccatggatgagccggttgttcgacaaccggtt 393
              |||||||||||||||||||| |||||||  |||||||||  ||||||||| || ||  ||
Sbjct: 120587 cttgtggacgaggaggaagaggatgttgtgatggatgaggtggttgttcggcagcctatt 120646

                                                                          
Query: 394    gctgaagcaagagacccacctccaaatgggcatgagctggagctttcgcattcgttgcct 453
              || |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 120647 gcggaagtaagagacccacctgcaaatggtcatgagctggagctttcacgttcgttgcct 120706

                         
Query: 454    gctcatcttgg 464
              |||||||||||
Sbjct: 120707 gctcatcttgg 120717
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                           
Query: 334     cttgtggacgaggaggaagatgatgttgccatggatgagccggttgttcgacaaccggtt 393
               |||||||||||||||||||| |||||||  |||||||||  ||||||||| || ||  ||
Sbjct: 3842074 cttgtggacgaggaggaagaggatgttgtgatggatgaggtggttgttcggcagcctatt 3842133

                                                                           
Query: 394     gctgaagcaagagacccacctccaaatgggcatgagctggagctttcgcattcgttgcct 453
               || |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 3842134 gcggaagtaagagacccacctgcaaatggtcatgagctggagctttcacgttcgttgcct 3842193

                          
Query: 454     gctcatcttgg 464
               |||||||||||
Sbjct: 3842194 gctcatcttgg 3842204
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                         
Query: 334   cttgtggacgaggaggaagatgatgttgccatggatgagccggttgttcgacaaccggtt 393
             |||||||||||||||||||| |||||||  |||||||||  ||||||||| || ||  ||
Sbjct: 48436 cttgtggacgaggaggaagaggatgttgtgatggatgaggtggttgttcggcagcctatt 48495

                                                                         
Query: 394   gctgaagcaagagacccacctccaaatgggcatgagctggagctttcgcattcgttgcct 453
             || |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 48496 gcggaagtaagagacccacctgcaaatggtcatgagctggagctttcacgttcgttgcct 48555

                        
Query: 454   gctcatcttgg 464
             |||||||||||
Sbjct: 48556 gctcatcttgg 48566
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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
           insert sequence
          Length = 3941

 Score =  133 bits (67), Expect = 6e-28
 Identities = 115/131 (87%)
 Strand = Plus / Plus

                                                                       
Query: 334 cttgtggacgaggaggaagatgatgttgccatggatgagccggttgttcgacaaccggtt 393
           |||||||||||||||||||| |||||||  |||||||||  ||||||||  || ||  ||
Sbjct: 713 cttgtggacgaggaggaagaggatgttgtgatggatgaggtggttgttcagcagcctatt 772

                                                                       
Query: 394 gctgaagcaagagacccacctccaaatgggcatgagctggagctttcgcattcgttgcct 453
           || |||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 773 gcggaagtaagagacccacctgcaaatggtcatgagctggagctttcacgttcgttgcct 832

                      
Query: 454 gctcatcttgg 464
           |||||||||||
Sbjct: 833 gctcatcttgg 843
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>ref|XM_513683.1| PREDICTED: Pan troglodytes similar to TTF2 protein (LOC457157), mRNA
          Length = 3307

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1183 gacgaggaggaagatgatgttg 1204
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>gb|BC015341.1| Homo sapiens transcription termination factor, RNA polymerase II,
            mRNA (cDNA clone IMAGE:4431381), containing frame-shift
            errors
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1064 gacgaggaggaagatgatgttg 1085
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>gb|BC030058.1| Homo sapiens transcription termination factor, RNA polymerase II,
            mRNA (cDNA clone MGC:39244 IMAGE:5457833), complete cds
          Length = 2628

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1061 gacgaggaggaagatgatgttg 1082
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>ref|NM_003594.3| Homo sapiens transcription termination factor, RNA polymerase II
            (TTF2), mRNA
          Length = 4860

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1077 gacgaggaggaagatgatgttg 1098
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>emb|AL391476.20| Human DNA sequence from clone RP11-229A19 on chromosome 1 Contains the
             3' end of the TTF2 gene for RNA polymerase II
             transcription termination factor, the TRIM45 gene for
             tripartite motif-containing 45, a ribosomal protein S15a
             (RPS15A) pseudogene, the gene for immune costimulatory
             protein B7-H4 and a CpG island, complete sequence
          Length = 171595

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 340   gacgaggaggaagatgatgttg 361
             ||||||||||||||||||||||
Sbjct: 12703 gacgaggaggaagatgatgttg 12724
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>gb|AF080255.1|AF080255 Homo sapiens lodestar protein mRNA, complete cds
          Length = 4629

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1087 gacgaggaggaagatgatgttg 1108
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>gb|AF073771.1|AF073771 Homo sapiens RNA polymerase II termination factor mRNA, complete cds
          Length = 3612

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 340  gacgaggaggaagatgatgttg 361
            ||||||||||||||||||||||
Sbjct: 1077 gacgaggaggaagatgatgttg 1098
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>ref|NM_104097.3| Arabidopsis thaliana catalytic AT1G52160 mRNA, complete cds
          Length = 2831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 2651 agatgatgttgccatggatga 2671
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>emb|AJ966425.1| Festuca rubra chloroplast ACCase gene for acetyl-CoA carboxylase
          Length = 465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 184 ctgaagctggatttgagtaca 204
           |||||||||||||||||||||
Sbjct: 20  ctgaagctggatttgagtaca 40
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>gb|BT000791.1| Arabidopsis thaliana clone RAFL07-09-G16 (R10701) unknown protein
            (At1g52160) mRNA, partial cds
          Length = 2774

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 2578 agatgatgttgccatggatga 2598
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>gb|AY117303.1| Arabidopsis thaliana unknown protein (At1g52160) mRNA, complete cds
          Length = 2704

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 2631 agatgatgttgccatggatga 2651
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>gb|AY070061.1| Arabidopsis thaliana unknown protein (At1g52160) mRNA, complete cds
          Length = 2818

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 2651 agatgatgttgccatggatga 2671
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>dbj|AK222156.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
            clone: RAFL23-11-G23
          Length = 1251

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 1011 agatgatgttgccatggatga 1031
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>gb|AC022354.1|AC022354 Arabidopsis thaliana chromosome 1 BAC F9I5 genomic sequence, complete
            sequence
          Length = 46335

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 351  agatgatgttgccatggatga 371
            |||||||||||||||||||||
Sbjct: 7326 agatgatgttgccatggatga 7306
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>gb|AC135101.24| Medicago truncatula clone mth2-18a18, complete sequence
          Length = 121741

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   ggacgaggaggaagatgatg 358
             ||||||||||||||||||||
Sbjct: 23956 ggacgaggaggaagatgatg 23975
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>gb|BC041737.1| Xenopus laevis eukaryotic initiation factor 5 (eIF-5), mRNA (cDNA
            clone MGC:52788 IMAGE:4724643), complete cds
          Length = 1767

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  ggacgaggaggaagatgatg 358
            ||||||||||||||||||||
Sbjct: 1574 ggacgaggaggaagatgatg 1593
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>gb|AC140031.22| Medicago truncatula clone mth2-24d16, complete sequence
          Length = 114611

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   ggacgaggaggaagatgatg 358
             ||||||||||||||||||||
Sbjct: 85251 ggacgaggaggaagatgatg 85232
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>gb|AC091955.2| Homo sapiens chromosome 5 clone RP11-429P5, complete sequence
          Length = 101948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   aggaagatgatgttgccatg 366
             ||||||||||||||||||||
Sbjct: 39605 aggaagatgatgttgccatg 39586
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>gb|AF123462.1|DJ526N18 Homo sapiens BAC526N18 neurexin III gene, partial cds
          Length = 180104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    gaggaagatgatgttgccat 365
              ||||||||||||||||||||
Sbjct: 134254 gaggaagatgatgttgccat 134235
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>emb|AL928678.16| Mouse DNA sequence from clone RP23-273B19 on chromosome 2, complete
              sequence
          Length = 167304

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    tagggcatggcttaaataaa 168
              ||||||||||||||||||||
Sbjct: 118881 tagggcatggcttaaataaa 118900
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>dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34I04, TM0133,
             complete sequence
          Length = 106411

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gacgaggaggaagatgatgt 359
             ||||||||||||||||||||
Sbjct: 42474 gacgaggaggaagatgatgt 42493


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,381,989
Number of Sequences: 3902068
Number of extensions: 3381989
Number of successful extensions: 63429
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63336
Number of HSP's gapped (non-prelim): 93
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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