ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY109170.1| Zea mays PCO119966 mRNA sequence 38 1.0
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 4.0
3gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 36 4.0
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0

>gb|AY109170.1| Zea mays PCO119966 mRNA sequence
          Length = 615

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 7   aaaggatccgcctcgtctattgg 29
           ||||||||| |||||||||||||
Sbjct: 197 aaaggatccacctcgtctattgg 175



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 17       cctcgtctattggattcc 34
                ||||||||||||||||||
Sbjct: 14349703 cctcgtctattggattcc 14349686



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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
             sequence
          Length = 158714

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    cctcgtctattggattcc 34
             ||||||||||||||||||
Sbjct: 98932 cctcgtctattggattcc 98915



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 17       cctcgtctattggattcc 34
                ||||||||||||||||||
Sbjct: 14344678 cctcgtctattggattcc 14344661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 218,180
Number of Sequences: 3902068
Number of extensions: 218180
Number of successful extensions: 56554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56498
Number of HSP's gapped (non-prelim): 56
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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