Clone Name | bastl40g12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|AY109170.1| Zea mays PCO119966 mRNA sequence | 38 | 1.0 | 2 | gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 | 36 | 4.0 | 3 | gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... | 36 | 4.0 | 4 | dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... | 36 | 4.0 |
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>gb|AY109170.1| Zea mays PCO119966 mRNA sequence Length = 615 Score = 38.2 bits (19), Expect = 1.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 aaaggatccgcctcgtctattgg 29 ||||||||| ||||||||||||| Sbjct: 197 aaaggatccacctcgtctattgg 175
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 cctcgtctattggattcc 34 |||||||||||||||||| Sbjct: 14349703 cctcgtctattggattcc 14349686
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 cctcgtctattggattcc 34 |||||||||||||||||| Sbjct: 98932 cctcgtctattggattcc 98915
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 4.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 cctcgtctattggattcc 34 |||||||||||||||||| Sbjct: 14344678 cctcgtctattggattcc 14344661 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 218,180 Number of Sequences: 3902068 Number of extensions: 218180 Number of successful extensions: 56554 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56498 Number of HSP's gapped (non-prelim): 56 length of query: 38 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 18 effective length of database: 17,155,003,908 effective search space: 308790070344 effective search space used: 308790070344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)